mRNA_P-littoralis_Contig767.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig767.11.1
Unique NamemRNA_P-littoralis_Contig767.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig767.11.1 vs. uniprot
Match: D7G8A8_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A8_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 3.020e-67
Identity = 177/272 (65.07%), Postives = 197/272 (72.43%), Query Frame = 3 
Query:   72 TGKASLALLVMSLLGSEYHTSPCSAFVLSVVTAPSSVPGSLAAAAGNLSPSLTAVRRRDSNRVSSSSCGPXXXXXXXXGVPPLGRPYSALAASNNNGADDDASVSVGTGPS-GSSADVFEALMAGDMAFVTEYVQSGGDCNIQDSIGDTPLMLAVESELASAVRLLITEGRADVNRASETTXXXXXXXXXXXXXXXXXXXXXXXXXXXLEARNKKGDTALGLACYWGNEDAVEYLLEAGADPNSRNDAGERPGDKFDDVFVPSVVGNFFTAD 884
            TG  SLALL++ LLGSE +T  C  F LSV  AP+S   S AA      P+   V RR     SSSSC           VP  GR  SALAA    G + + S +   GPS G S D+F+ALMAGDM F+T+YV++GGDC++QDSIGDTPLMLAVESEL  AVR+LI EG A+ N AS+TTXXXXXXXXXXXXXXXXXXXXXXXXXX LE RN KGDTAL LAC+WGNEDAVEYLL AGADPNSRNDAGERPGD FD VFVP VV NFFTAD
Sbjct:   14 TGAPSLALLLLLLLGSERYTPSCLGFSLSV--APTSAVRSPAAR-----PATAPVGRRGK---SSSSCRVDVSC-----VP--GRTCSALAAFG--GGEGEGSSA---GPSAGGSGDIFDALMAGDMDFITKYVEAGGDCSVQDSIGDTPLMLAVESELTPAVRMLIKEGGANANLASKTTXXXXXXXXXXXXXXXXXXXXXXXXXXELELRNNKGDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSVFVPQVVENFFTAD 263
[Close]
BLAST of mRNA_P-littoralis_Contig767.11.1 vs. uniprot
Match: A0A835ZGL3_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGL3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.440e-26
Identity = 82/145 (56.55%), Postives = 104/145 (71.72%), Query Frame = 3 
Query:  417 DVFEALMAGDMAFVTEYVQSGGDCNIQDSIGDTPLMLAVESELASAVRLLITEGRADVNRASETTXXXXXXXXXXXXXXXXXXXXXXXXXXXLEARNKKGDTALGLACYWGNEDAVEYLLEAGADPNSRNDAGERPGDKFDDVFV 851
            D+F+A++ GD   V  Y+  GGD NI+DSIGD+PLMLA E++    ++LL+ EG AD+N  +      XXXXXXXXXXXXXXXXXXXXXXXX      +GDTAL +AC+WGN D  +YLL+ GADPN  N  G+R GD+F+ VFV
Sbjct:   75 DIFDAILEGDAESVARYIAHGGDVNIRDSIGDSPLMLAAENDFTDIIKLLVHEGGADINGKAGAGMETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDTALNVACHWGNVDTAQYLLDRGADPNCANHDGKRAGDEFETVFV 219
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig767.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8A8_ECTSI3.020e-6765.07Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A8... [more]
A0A835ZGL3_9STRA1.440e-2656.55Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig767contigP-littoralis_Contig767:51547..60619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8A8
PFAMsAnk_2,PGG
Model size1597
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue9.87e-70
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-19_003780.1
Descriptionprotein ubiquitination
Cds size1167
COG categoryI
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig767.11.1prot_P-littoralis_Contig767.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig767 51966..60608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791581.5486794-UTR-P-littoralis_Contig767:51546..519651680791581.5486794-UTR-P-littoralis_Contig767:51546..51965Pylaiella littoralis U1_48UTRP-littoralis_Contig767 51547..51965 -
1680791581.619791-UTR-P-littoralis_Contig767:60608..606191680791581.619791-UTR-P-littoralis_Contig767:60608..60619Pylaiella littoralis U1_48UTRP-littoralis_Contig767 60609..60619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791581.560839-CDS-P-littoralis_Contig767:51965..523771680791581.560839-CDS-P-littoralis_Contig767:51965..52377Pylaiella littoralis U1_48CDSP-littoralis_Contig767 51966..52377 -
1680791581.572701-CDS-P-littoralis_Contig767:53194..533061680791581.572701-CDS-P-littoralis_Contig767:53194..53306Pylaiella littoralis U1_48CDSP-littoralis_Contig767 53195..53306 -
1680791581.584144-CDS-P-littoralis_Contig767:53973..540111680791581.584144-CDS-P-littoralis_Contig767:53973..54011Pylaiella littoralis U1_48CDSP-littoralis_Contig767 53974..54011 -
1680791581.6000772-CDS-P-littoralis_Contig767:54666..547751680791581.6000772-CDS-P-littoralis_Contig767:54666..54775Pylaiella littoralis U1_48CDSP-littoralis_Contig767 54667..54775 -
1680791581.6095972-CDS-P-littoralis_Contig767:60112..606081680791581.6095972-CDS-P-littoralis_Contig767:60112..60608Pylaiella littoralis U1_48CDSP-littoralis_Contig767 60113..60608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig767.11.1

>prot_P-littoralis_Contig767.11.1 ID=prot_P-littoralis_Contig767.11.1|Name=mRNA_P-littoralis_Contig767.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=389bp
MKIFGASSRNRSWAGVQQHRTGKASLALLVMSLLGSEYHTSPCSAFVLSV
VTAPSSVPGSLAAAAGNLSPSLTAVRRRDSNRVSSSSCGPAAAATAAAGV
PPLGRPYSALAASNNNGADDDASVSVGTGPSGSSADVFEALMAGDMAFVT
EYVQSGGDCNIQDSIGDTPLMLAVESELASAVRLLITEGRADVNRASETT
GETPLMLASYYGHTNLARVLVAEGGADLEARNKKGDTALGLACYWGNEDA
VEYLLEAGADPNSRNDAGERPGDKFDDVFVPSVVGNFFTADDEDKKDGGE
EKETKKSEDKITFDDDGEEDIMFDELDVKPEEAAAAAASEKEDVTLEEEK
GGDGEPNDDDEEQLQGPREVILDMLERAREEAAALKAA*
back to top

mRNA from alignment at P-littoralis_Contig767:51547..60619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig767.11.1 ID=mRNA_P-littoralis_Contig767.11.1|Name=mRNA_P-littoralis_Contig767.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9073bp|location=Sequence derived from alignment at P-littoralis_Contig767:51547..60619- (Pylaiella littoralis U1_48)
AACCAGACACAATGAAGATCTTTGGGGCCAGCAGCCGCAACCGCAGCTGG
GCGGGGGTGCAGCAGCACCGCACCGGGAAAGCCTCCCTCGCCCTTCTGGT
TATGTCACTGCTGGGGAGCGAGTACCACACCTCCCCATGCTCGGCCTTCG
TCCTTTCTGTCGTGACAGCACCGTCGTCGGTGCCAGGGTCGCTGGCAGCA
GCAGCCGGTAACCTGTCACCATCGCTAACTGCTGTTCGGCGTCGCGACAG
CAACCGCGTGTCGTCCTCATCATGCGGTCCAGCTGCAGCAGCAACAGCAG
CAGCAGGAGTGCCCCCTTTAGGTCGACCATACTCGGCGTTGGCAGCATCA
AACAACAACGGTGCCGATGATGACGCTAGTGTCAGTGTTGGTACCGGTCC
TAGCGGGAGCTCGGCAGACGTCTTCGAAGCTCTGATGGCTGGAGATATGG
CGTTCGTGACGGAGTATGTGCAGTCGGGTGGCGACTGCAATATTCAAGAC
TCGATAGGTATGGAGACACAACTCTGGGTCATCGGATACAATGATAACTG
TATACGTATCCTCCCGCAGCAGTGCTTACAGCAGTTACCGTGGTTTCCTG
AACTTCAGACAGAGAACGGATGATAATGACATGAGGCGTGATTGTCGGTA
TCCTGTGTCTGTACCTTCCTCCCGTGTTGCCGCGTTCGATGCGCCCGCAC
GTATCCGCGGATGTAGACTGGCGCCTAGAGTGAATGTGTGACAACGCACA
GACACACAGGCAGGCAGGCAGACATACGGTACCAGATCGTGACACACACT
ACTGCTGCAATACACTTTCACTTTCGCGCACACACAGGTGTTGAAGATTG
GTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTACAAACCATTCCGAT
CTCTCTCTCCTCAGTACCTTTTGATGTCCGTTCTCCACCGATCGGGGACG
ATTTCCGTGGTCACAGGCTGCTTGCCCCAAAAGAGGTACAAGTATATAGT
ACGCGGGAGATCCCCTCAATCCACCAAACAAAAAGCACGACAAGGAAACT
TCAGCAAACAAAAACGGACCCCGAGAAATCACACAACGCTGTACACAAAT
AGAACAAGAAAAGGGAGCCTGGTCCAGAGCGAGGTCACAATATAAAAATA
AAAAGCCAAAAAAAGTCACAGAGTGACAAAAAGACAAGAGAGACCGAATT
CAGTTGCCAAGGTGTCAATAAAAATGGACATCAGGCGTGCTACTCTCTTC
ACCGGCCCAGCAACAGTCTCAGGCAGCGCAAGCAAGCAGATGTGAAGGGG
CAAACGGCAGAAGGGCAGAAAAACAGAAAAACAGACAACACAAGAAGAAA
AAAAGACAGGGGGAAATCCACACAGCAGTACACATGGGTCCCGATGTAGC
GGCACCTAGTGGCAGTGGATTTCATTTTCGTCATTCAGGGCAGGCCGTTA
TTCATCAATAGCGGTAGTATGCCGCTATACCGGGTAGTGCCACACATGGT
TAACAATGGTACTGTTTGGTACAACTCTCTCTTGACGGTGTCATGCGTGT
CCCATTGTGTTGTGTACGGTGCTCGTAGTACATATCATATGATATGGTAC
TACCACAGCAGTACAGCATCGTACACAATGAATGCATCCGCACACGAGGC
ATGTGGACAAACAGCAGTAAAACCGTGTACCGGGGTATTTTACTGTATTT
TACTGTGGCGTCCATCATTACTAGAGAGGTGGAGGCTCCAAGGACAAGGG
CGGTAAAAAAGCCCTGAGAGAAAAATCTTATTTTGAATCCAAGGAATAAA
TTTCAGTCTTGAACCAAGGTCAAATTGTTTACTTGGCGTAAACTCTCACT
TGGTCGGTCTGTTGTGCAAGCGAGATTGCCTGAAGTATTAATATCAGTAG
AGGACACCATGAGGCAGCTCTGTGTGTCTGCACGTTCAGACATGCTGCTG
GGGCTGGCGAATCGAAGGCTGCAGCAGTTGATCAAAACGTCCGCAAACTG
GACACAAACCGGACCGACACCAAAGGTTTGTGACAGCTGTTCTGGCCGCC
ACGGACCCAAACCACCTGAACTGCAGGCCATCCGAGGTAGCTAGTGGCAC
CAGCTACTGCCGTAGACCCGTGGTTCAGGTTGTTGGAGTCTGTGGCGGTG
AGTGCAGGTGCGGCAAGCCTTTGGTGTCGGTCCAGTACGTCCGCAGTTTG
CGGACTTTTTTAGCCACTGCTGCAGCCTTCAATATCTCCGCCCCAGCAGC
ATGTCTGAACGTGACGGCACACACGTAGCTGCTCTATGGTATCTTCCACT
GATCGAAATGCTTCAGGAAATCTATTATACTCCGTACCTTGTAAAACAGA
GAAAGTTAGAGGTGAAGCCAAATATGTAGGGCCGGGTATCGGCGCAGCCG
ATCGATACTAAATATATCGAGATCGGCGCAGCCGATATGTCGATATTTTG
TTGATATACGAAGTATCGGCGAGCGCAGCGAGCCCGCGAGCACAGCGTGC
TTCGGCGCGGAGGCGCTCGAAGCTCGCTGTGCGAGCAAAATCGCCCCCCC
CCCGGCTGGTGAGGGGGCTCCGCTGGAGGCGCCGCCGGAGGCAGAGAATT
TGGGGCGTTTTCGCTTCATTTCCAGTCAAAAATGATTTCAAAGTTGCCCC
CAACACAGGTTTCGAATATCTTGCTTGCTTTCGGTGTTCGTCACGAAAAT
ACCAAAAAACTCTACAAAAAACGCAGTAAACAAAAAGGGCTCAAAGCTGT
GGCACCAGATGAGTCACGAATTTATAGTTGTCATCACTAGCTCTTATTGT
AGAGCCGAAAACTGGAATCAAAGGGTTTCACATGAGGAACTGGAATCCAA
ATTCCAGGCCTGGAAAATATTTCTATCTTATGGGGGTTGTTTTCGGCCGA
AACTGGAAAATAATTTCCAGTTCTCCGGATTCCAGGCGACTCGCCTGGAA
TCTGCCCTCGGATTCCAGGTCAAATGACCTCGGATTCCAGGCCTGGAATC
CGTCGCGCGCGCGCCGCCACGAGGTTCCGCCGCAGTGGTTCACAGCACAC
AACAAGCACAAATACAAACAACCGAGCACACAAACACACTGGCCAGGTGC
AGGTACCAAAGCGACGTGCGATCCTGGCCGTGCTGGCGATAACGCTCGCC
GCTCTGCGCCATCAGCAGCAGTTTATCGAAAGTAGCCCAAACCGCCTGCC
GTCCATCCGGCAACCCCATCTGATTTCCAATCGCTGCCCAAATTTTCCAG
TTCTCCCATAAAGTTGGCACCAGTCTGATTGTCCGACTTGGAATATCAGG
CTTGAAAACGCTTTTCTAAGTCGAGAGAAATTCCAGCACATAAGATTGGG
CCTCATCATAGCACGCTGCGTCCGCAGTGTTGTGTAGGGGGCTCCGTACG
TGTATATGATGATCCACGGGTCCCCTTTTCGATTCACGGAACCCCTCACA
AATATCGTGGGTATATCGGTGCCCACGATACGATATCGCTACGCTATATA
TCGCGACGATATATCTTCCATATCGATACCGATACCCAGCCCTACGAAGA
TGCTATTTTAACTTGATGTTAGAATCCCCTATTTTTTTTTTATATTTACG
AAGGAAATTAGTAGTAGTCGTGTGATATGCATGTAAACAGAAGCCCCGCC
GCTGTGTGCGATAAGGAACAGTTTTTCTCTTCCCCGCCGCCTCCCTGCTT
CACCATTTTGATTGTCAGGGCTCCTTCGCTGTTTTCCGAGTCCGTGCCTC
TCAACAATCTGTTCTCCCTGTGCGTACCCTTAAAGGATTTTTTTTTTTCC
AACACTCCCCACAAAGTACCTGCAGTAGGCTGTGTTCATCATGCAGACAG
CAGTACACAAGATGAGGAGGAGATCGCCATCTTCGCTGCACAGAAAACAA
CAACAAAAATCTATCGCGGTTGAGTGAAAAAATCGACCGGGCGAGAGAGA
GAAGACTGTGTGACTGACTTGCAGTTTTCTACATTGCGGCACCGTCTACC
GTCACCCCCCTAGTAGTCAGCGTTGTGTCTCTTTCTAATGGACTGCAGCT
CCAGCAACATAAGTCTTTCCCGACGCCTTCCTCTGGCATGAGGTACCCAG
CGTGTGGTTGTCAGGACCCCTTCGCTGTTTTTCAAAACTCGTGCCTCTCA
TCAACCTGTTGTCCCTGGAGTCTTCACAAGGAATAACTTTTTTTTTATTC
CCCCACATGAGGTACCTGCAAACGTCTGTGTTCATCACATGGAAGGTAAA
GAGGAGATGGCCATGTTCGCTGTACAGAGAAATATATCGCAGGTGACTGA
AAAGATCGACCGGGCGAGAGAGAGAAGGCTCTGTGACTGACTGCAGTCTT
CAATATTGCTGCACCGTCTACCCTCACCCCCCTAGTACGCAGCGTGGTGT
CTCTCACTGCTGTAGCAACAGGTACAGCTGGTGTGCGGTGTGCTGGACTG
CAGCATCACCAGCAGATGTGTGCCGTTGTATCGTACTGCTGCAATGGTGT
GCGTATACTCTCTGTTGTCCTGCCTGCCTGTGTGCAGCAGCAGCAGCAGC
AGCAGCAGCAGTAGCAGCAGCAGGGCCATATTCTCTCATAGCAGGCACCA
ACATCAGCACTCTCTCTCCCTCTCTTTCCCTTTTTGGGCCTCTTCTCCTC
TCTCCCCCAACCATACACCAGTACAGCAGTGCATCAACTATGCAGCAGCG
TTGTGTGTGCTTTGTGGATGTGCTCTCGACAGAGTACCTGACAAACATGC
CTCCCTTCATTTTTTCGGGGAGACGGTGAATTTTGGCGAAGAAAGGGACG
CACGACACTGCTGCTATCTCGACGAACTCGGGGAGCGGTTGCGAAGGCTC
GGGCTAAAATAGCTCTGTCCTGCGCACCCGAGGATTCGTGCAGTGGTTCG
GTATTGATCTGGTTTGACCAAAAACAGTGGCAAGAACAACGGCGTCTCAC
AGACGCTCACAAACATACACAGACGTACAGACAGCCTCGGCCACAAAATC
TCCCCCCCTGGTTCATTTATTTTTATTTGTTTGCGTGTGTGATCCAGGCT
CGGGGGCGGGGGGTATCTAAACAGTTTTTTTTGTTTTGTTTTTGACAAAA
AAGCTCATTAACGTTCGCCAAAAAAAGCTGAGATATTATCATTCTTGCAC
CACGAACTCTAACAATAACAAGAGCAGTAGCAGCAGCAGCGGCAGCAGTG
TCGCAGTGTACAGGGCTCCAAGACAAGATGCGAATTGGTGCACAAAATCA
ATGCAAGCATCCACACGTACTAAATTGAGCCACGTCGGACGAGCCCTTGA
GAATACGGAGAGATTCCTACTGCCGCTCCTACTTCTCTACTCTGTCGTGC
TGAGCTGTAACTTCAAACGAAGCTCGACCACTCCATTCGGTTCTGCCTTC
TTCACAAGTAGTCTACGGCAATTCAAGAGCATCCTGGTGTCTTCCGACCG
ACGCGCTGGTTGCGACGTGGGCTGCGAGTAACCACTGTACATGTTTGCCA
CGTTTTTGCCTTGGAAATAAAATGCCCCTGCCTTGGTATTGCCACACTAT
TGTCGGCGTGCTTTCGTCACACTAGATATCGATCCGATCTCTGCTCAGTA
CCTTCTATTGTCGGCTACAAACCGCTTCGATCTCATCTCAGTACCTTCTA
TTGTCCGCGCTGCTCGCCCATCTAATAGCGCACGTTTTCCGTGGTCAGTC
ATACATACATATATACATACATACATATGTACATACACACCTATCATATA
CGTTTGTCTTTTGGTATTGTGCGCTTTTTCTATTTATATTGCAGGCGACA
CTCCGCTGATGCTCGCGGTGGAGAGCGAGCTGGCGTCTGCTGTGAGGCTA
CTCATCACGGAGGGAAGGGCGGACGTCAATCGCGCCTCGGAGACTACCGG
AGAGTGAGTTCGACGGACCGGGAGCACACGGTAACGAGGAGCGCTTGATT
ACACCGGACGGGTGGTATCTTGAGCGACCTACGATACTGTCGTGTAGATT
TTTTTAGCACGAAGAAGATTACTAGATGAAAGCGAGTGCTCCAATCGTAT
GTAGTGGAGAATATCGTCGCCCAGCACCAACCGAGCAAACCTTTTGAGAG
GTATTCTTTGCCCAGAAGCCCTGAAGAACCACAGAGAGAGCCGACTCACC
TAAAATTGTCAACTGCACTTTGCTGCCTGCCGCCATTTTCGGCGGCTGTG
TTGTGGGCAGGCACAAAAGCGGTTTCGAAGTTTTACACGGCCCATGGGAT
GACATTTTCTTCGTGTCAGTGCTGGTAGGAACTGTCGCCGTGTGTCGTTG
ATCCTACTCGGTGTTTCGTGTTGTTGTTTTCGATGATGACTTGTTTCGGT
CGGCTCACGCGCGATCTGTGTTTTTTCGTTTGGATACATCGCGATATCGA
TGTGAACGAGTCTTACGGTTGTGCCGTGTACGTACATCCACATCCCACCT
GACCTCCCCCCACCACGCATACGGTTGTGTCGTGTACGTACATCCCACCT
GACCTCTCCACCACGCGTGCACTCCGCGCCGCACCCCCCTCCCCCCCCTC
ATGGCCAGGACCCCTCTCATGTTGGCGTCCTACTACGGGCACACGAGTGA
GTAGAGTCGAATTAGATAATTTTTTGGGAACCGACCGGCGCTAGTGCATG
CTCTACGAAATCGAAAAAACGGCGGTGTGGTCCATGTTGTGGTGGCACAC
GTTTCTTTTTATCAACGGCAGATATATTTACTCAGCCGTTGATGCCGAGT
GGCCAAGCAAGTTACTGACTAACTGTTCTATGCTCCAGGCGGTGTTTTTG
TTGACAAATGTGCAAACTATTCACACTACGTCGGCATGATGGACATACGT
TTGATATGCATGCGTATCCCGTCCGTCTCCTTTCGTGTAATGCATGTATT
CAACAATCATATTTCGCCGCGAAAATCAATTTAAAAAAAAACCCGAATGA
ACGAAGGAACGAACGTACGAATAAAAAAATGAACGAACGAACGAATGAAT
GAATGATTCGAATGGAATAAATGAATAACTGAATTACTGAATTGATGAAT
GAATAAATGGATGAATGAATTGATTTATTCATGTCGAAGTACTTCGAAGT
ATTTCGAAGTATGAATGAAAGAATAGATGGATGAATGAATGAATGAATGA
ATGAATGAATGAATGAATGAATGAATGAATGAACAAATGAATGAACGCAC
GAACGAACGAACCACCGAACGAACGAACCGTGTGGGGCGGTAAAATGATC
CCCCCGTGAGCAGATCTTGCACGAGTGCTCGTCGCCGAGGGCGGTGCAGA
CCTGGAGGCTCGCAACAAGAAGGGGGATACGGCGCTCGGCCTGGCGTGCT
ATTGGGGAAACGAGGACGCGGTCGAGTGAGTCAAAATATACTTTTTTTGT
TTTCCGGGGAAGGGTCGTGGCGGGATATTTTGGCATGTGCCCCCGGTGTA
CAATTATCAGTTTTCCAGTATCAAGCTGGTCAAGTCAGCTTTTTGGGGGG
GAAGGAATTGCTCGTCTTCCCCCCTGCAGAACACAGCGGCAAGCTGATCA
TTCAGTCCACCTCCCCCCCCTTACTGAAGCCCGTTCCCCGAAATCTTGTT
GCTTTCCAGTTGGCGTCGGTGTTTCAGTTGGCCTCCAGTACAACTAAGTT
CGACAGGATGCCCATTTTGGCGAAAGTCTGCTGCTGTGGCAGATTCGAGT
TGAAACGTACCAGGCAGCAGCGGATTTTTCGTACCGCTGTTTCCTTGAGC
TGGTGTTTACCCGACATTCCACAGCCAAGCTCTTCACCCGCCGCGCGTCA
GCTCCAACTCTCTTCTGTACCTCGACCTTTTCTCGCGTGTTTTATGCACA
TGGTGTCCAGTCCCACAGAGTACTTGGAGTATTACAGCGGTGCCGGAAAA
AAAACGAAGTTTAGTGTTCGTCATTCTACGGTTAAAGGGGAACTGTTGCT
TGTTGAGTGTGTTCTGTCGAGAGTTATTTTCCTTCGTTGTCTGATGCTCC
ATCTTCGCCCCACCTGTCCCGTCCCGTCCCTCCATCAACGTTAACACCGC
CCCAATGCCGATTGTGATTTCATTTGCGGTAGGGACAGCAGTGCTCAATC
CCGTAAAGGGATTCACGTTTCGTATAATGGTTGAGAAGAGCATCAACCGA
GCCTCCCCTTCTGCCTGCTGTCTTGTCGCCATGGTGTATTAGGTATCTTC
TTGAGGCCGGGGCAGACCCGAACAGCCGCAACGACGCCGGCGAGCGTCCC
GGAGACAAGTTCGACGACGTCTTCGTTCCCTCAGTCGTGGGAAATTTCTT
CACCGCCGATGACGAGGACAAAAAAGACGGCGGGGAAGAGAAGGAGACGA
AGAAGAGCGAGGATAAGATCACGTTTGATGATGATGGTGAAGAGGACATC
ATGTTCGACGAACTCGATGTCAAACCTGAAGAAGCAGCAGCAGCAGCAGC
GTCAGAAAAAGAAGACGTCACCTTGGAAGAGGAGAAGGGAGGAGACGGCG
AGCCAAATGATGACGACGAAGAGCAGCTGCAAGGTCCCAGGGAGGTCATC
CTAGACATGCTGGAAAGAGCCCGGGAGGAGGCGGCGGCACTCAAGGCGGC
CTAACGTTTCATGCGTCGTCGGCTTATTTTCTGGGACATAGGATGTTCGT
GTTTTACCTCTCGGGTGTTGCCAGGGGGAAGGGATATTAGAAGCCCCGAT
CGGTCACACCCCGAGGTTGGCCGGGTGGGGGCTAGACAAGCTCGTTCAGG
GTGGTGTGGCCCGCTCTGTGACTCTGGCTGTACCTTGTCCAACGTGTCCG
TCATGAGAGACTGAAATGTAAACTTCGCATCATAGAAGTTAGTTATCACG
GATGGAAAATTAACACTTTGGAGTGGAGAATAAGACAAAAACCGAAATGC
AAAAATGTTATCGAACGAAGTAGTCAGAATGCGCGGCAAAAGAAGTAGCG
CCCGGAGCAGGGAGGGGAAAGCCATGGACGAGTGGTCGCGAGCACGCAGG
CAGTAAATCTGGTACATGCCGTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig767:51547..60619-

>mRNA_P-littoralis_Contig767.11.1 ID=mRNA_P-littoralis_Contig767.11.1|Name=mRNA_P-littoralis_Contig767.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1167bp|location=Sequence derived from alignment at P-littoralis_Contig767:51547..60619- (Pylaiella littoralis U1_48)
ATGAAGATCTTTGGGGCCAGCAGCCGCAACCGCAGCTGGGCGGGGGTGCA
GCAGCACCGCACCGGGAAAGCCTCCCTCGCCCTTCTGGTTATGTCACTGC
TGGGGAGCGAGTACCACACCTCCCCATGCTCGGCCTTCGTCCTTTCTGTC
GTGACAGCACCGTCGTCGGTGCCAGGGTCGCTGGCAGCAGCAGCCGGTAA
CCTGTCACCATCGCTAACTGCTGTTCGGCGTCGCGACAGCAACCGCGTGT
CGTCCTCATCATGCGGTCCAGCTGCAGCAGCAACAGCAGCAGCAGGAGTG
CCCCCTTTAGGTCGACCATACTCGGCGTTGGCAGCATCAAACAACAACGG
TGCCGATGATGACGCTAGTGTCAGTGTTGGTACCGGTCCTAGCGGGAGCT
CGGCAGACGTCTTCGAAGCTCTGATGGCTGGAGATATGGCGTTCGTGACG
GAGTATGTGCAGTCGGGTGGCGACTGCAATATTCAAGACTCGATAGGCGA
CACTCCGCTGATGCTCGCGGTGGAGAGCGAGCTGGCGTCTGCTGTGAGGC
TACTCATCACGGAGGGAAGGGCGGACGTCAATCGCGCCTCGGAGACTACC
GGAGAGACCCCTCTCATGTTGGCGTCCTACTACGGGCACACGAATCTTGC
ACGAGTGCTCGTCGCCGAGGGCGGTGCAGACCTGGAGGCTCGCAACAAGA
AGGGGGATACGGCGCTCGGCCTGGCGTGCTATTGGGGAAACGAGGACGCG
GTCGAGTATCTTCTTGAGGCCGGGGCAGACCCGAACAGCCGCAACGACGC
CGGCGAGCGTCCCGGAGACAAGTTCGACGACGTCTTCGTTCCCTCAGTCG
TGGGAAATTTCTTCACCGCCGATGACGAGGACAAAAAAGACGGCGGGGAA
GAGAAGGAGACGAAGAAGAGCGAGGATAAGATCACGTTTGATGATGATGG
TGAAGAGGACATCATGTTCGACGAACTCGATGTCAAACCTGAAGAAGCAG
CAGCAGCAGCAGCGTCAGAAAAAGAAGACGTCACCTTGGAAGAGGAGAAG
GGAGGAGACGGCGAGCCAAATGATGACGACGAAGAGCAGCTGCAAGGTCC
CAGGGAGGTCATCCTAGACATGCTGGAAAGAGCCCGGGAGGAGGCGGCGG
CACTCAAGGCGGCCTAA
back to top