mRNA_P-littoralis_Contig763.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig763.25.1
Unique NamemRNA_P-littoralis_Contig763.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig763.25.1 vs. uniprot
Match: A0A6H5KX11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX11_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.680e-45
Identity = 88/110 (80.00%), Postives = 98/110 (89.09%), Query Frame = 2 
Query:    2 MIPRVAAMVVVAAADKLEACVTFAVMSEALLSHAHLVSTSQLQELMEARCMPAIREETRVSHKLSPEIVGPSLRTATEILDSAYSKRTKEIQEARKAHVDHASDPSAKGA 331
            M+PRVAAMVV AAADKLEAC+TFAVMSEALLSHAHLVST QLQELMEA CMP IR+E RVSHKL PEI+GP+L+TAT+ILDSAYSKRT+E QEARKAHV+H   PS  G+
Sbjct:  649 MLPRVAAMVVAAAADKLEACLTFAVMSEALLSHAHLVSTPQLQELMEAHCMPLIRKEMRVSHKLCPEIIGPTLKTATDILDSAYSKRTREAQEARKAHVEHTLGPSRGGS 758
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BLAST of mRNA_P-littoralis_Contig763.25.1 vs. uniprot
Match: D7FVV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV0_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.470e-44
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = 2 
Query:    2 MIPRVAAMVVVAAADKLEACVTFAVMSEALLSHAHLVSTSQLQELMEARCMPAIREETRVSHKLSPEIVGPSLRTATEILDSAYSKRTKEIQEARKAHVDHASDPSAKGA 331
            M+PRVAAMVV AAADKL AC+TFAVMSEAL SHAHLVSTSQLQELMEA CMP+IR+E RVSHKL PEI GP+L+TAT+ILDSAYSKRT+E QEARKAHV+H   PS  G+
Sbjct:  577 MLPRVAAMVVAAAADKLGACLTFAVMSEALFSHAHLVSTSQLQELMEAHCMPSIRKEMRVSHKLCPEITGPTLKTATDILDSAYSKRTREAQEARKAHVEHTLGPSRGGS 686
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig763.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX11_9PHAE1.680e-4580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVV0_ECTSI1.470e-4479.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig763contigP-littoralis_Contig763:84845..86453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size348
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002240.1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791577.4718704-UTR-P-littoralis_Contig763:84844..848451680791577.4718704-UTR-P-littoralis_Contig763:84844..84845Pylaiella littoralis U1_48UTRP-littoralis_Contig763 84845..84845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791577.486012-CDS-P-littoralis_Contig763:84845..849591680791577.486012-CDS-P-littoralis_Contig763:84845..84959Pylaiella littoralis U1_48CDSP-littoralis_Contig763 84846..84959 +
1680791577.4959102-CDS-P-littoralis_Contig763:85321..854861680791577.4959102-CDS-P-littoralis_Contig763:85321..85486Pylaiella littoralis U1_48CDSP-littoralis_Contig763 85322..85486 +
1680791577.5123913-CDS-P-littoralis_Contig763:86387..864531680791577.5123913-CDS-P-littoralis_Contig763:86387..86453Pylaiella littoralis U1_48CDSP-littoralis_Contig763 86388..86453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig763.25.1prot_P-littoralis_Contig763.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig763 84846..86453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig763.25.1

>prot_P-littoralis_Contig763.25.1 ID=prot_P-littoralis_Contig763.25.1|Name=mRNA_P-littoralis_Contig763.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MIPRVAAMVVVAAADKLEACVTFAVMSEALLSHAHLVSTSQLQELMEARC
MPAIREETRVSHKLSPEIVGPSLRTATEILDSAYSKRTKEIQEARKAHVD
HASDPSAKGAPGNRK
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mRNA from alignment at P-littoralis_Contig763:84845..86453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig763.25.1 ID=mRNA_P-littoralis_Contig763.25.1|Name=mRNA_P-littoralis_Contig763.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1609bp|location=Sequence derived from alignment at P-littoralis_Contig763:84845..86453+ (Pylaiella littoralis U1_48)
GATGATTCCCCGGGTGGCCGCGATGGTGGTGGTGGCGGCCGCGGACAAGC
TCGAGGCGTGCGTGACTTTCGCCGTCATGTCGGAGGCGCTGCTTTCTCAC
GCTCACCTTGTTTCGGTAGGAGAGGGAGAGAGAGAGGGAAAGAGGGAGAG
AGAGAGACTTAATGGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ATGGGGATCGCCGACCAATCTACGACAACCCGAAACGCGTGCAGACATGA
GAAAACGACACACATCGTGCAGTAGATGCCCCCGTCGCCCTAGAAACCCC
CGCGCGCGAGGCAGACGAAAGCCTCCATCCCGGTGTGAAAATGCTTTTTT
TGGTGTCGTAGAGGCACTTTTTTTTAACTTCGTGGGCGCTTCAGCGGGGT
CCTTATCGAACACAACCTGCCCCGCCTTGCCATCTTGTATGGACATGTCG
ACACGGTCCGGCGTACGAACTAAACAGACCTCCCAGCTGCAGGAGCTGAT
GGAAGCTCGCTGCATGCCTGCCATTCGCGAGGAGACGCGGGTGTCCCACA
AGCTATCTCCGGAGATAGTCGGACCGAGCCTCAGGACGGCCACGGAGATC
CTCGACAGCGCGTACTCCAAGAGGACGAAAGAGATTCAAGAGGTGATTCT
TTTGTGCGCGGGTAAATGCATATGTACACACACACAGAGGAGAGCCGAAG
AGCTTGCAGGTTTGTCCTGGTTGTGATGTTATTATTCACATATCGTACAA
TGCTTGTACTTCGAAGTACATATCACGTAACAAGCGGAGAGTGGCTTCAG
TTTGTTTTTGCTCCAGACGAAATCACCATCGTTGTTCCGTCCATGTTTTA
GCGGCCGCGTGCGTTTTTTCGAGCCTTCTCTGTGCTCCCTTTCCAACGAC
GCTAAATACTGATGTTCGTAAACCGCTTTGAACACACGGAACGCACAGTT
TCTGCCTGCCAAAACACATTTTCACTGAAATTTGAAATAGAGGCCATTAC
CCCCCCGCCCCCATTCTCCGGTCCCCTCCTCGGGTTGGCGTCGGCAGGCA
ACGATGCTGTGTTAAAACCACAGCATACGCTCTGCGTGAAATTCATTCAG
GTTGCAGCACCGTTTTTTTTCATACTTGTATCAAGTATTGGGGGTAACGA
TGAAATGGAGGGCGACGAGTTTCAACGTAGATCGTGGATCGCGCGGGGGT
GGAGATTCGTACACCCGCGGAAAGAAACATACTCGTACCACGCGGTGTGA
GAGGGGTCGGAAAAGCCCCCCATGAAAGAAAGTAGCCACGTATACTGTCT
GTGTCCTTGGCATCAGCCATCGCTCAAATCTCTCCTGGCAATGGAACTCG
AACAGGACGAGGTGTTTACCGTGTATTGGGACGTAGAATGTCTCGGGATA
AACATTCTGAAGTTATGTATGTACCAGGTATGTGTCAATTGTGACGACGA
CAGCAGCGCGGTGACCTCGTTTTCGCGATCTCCCTCCGCTGTTTGTGTGT
GTGCTGACGGACGCCTTTCCGCGGCGGGGCGACAAAACAAAAGGCGAGAA
AGGCGCACGTGGATCACGCCTCTGATCCGTCCGCCAAGGGTGCCCCTGGA
AACCGTAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig763:84845..86453+

>mRNA_P-littoralis_Contig763.25.1 ID=mRNA_P-littoralis_Contig763.25.1|Name=mRNA_P-littoralis_Contig763.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig763:84845..86453+ (Pylaiella littoralis U1_48)
ATGATTCCCCGGGTGGCCGCGATGGTGGTGGTGGCGGCCGCGGACAAGCT
CGAGGCGTGCGTGACTTTCGCCGTCATGTCGGAGGCGCTGCTTTCTCACG
CTCACCTTGTTTCGACCTCCCAGCTGCAGGAGCTGATGGAAGCTCGCTGC
ATGCCTGCCATTCGCGAGGAGACGCGGGTGTCCCACAAGCTATCTCCGGA
GATAGTCGGACCGAGCCTCAGGACGGCCACGGAGATCCTCGACAGCGCGT
ACTCCAAGAGGACGAAAGAGATTCAAGAGGCGAGAAAGGCGCACGTGGAT
CACGCCTCTGATCCGTCCGCCAAGGGTGCCCCTGGAAACCGTAAA
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