mRNA_P-littoralis_Contig763.19.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: A0A6H5L4A0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4A0_9PHAE) HSP 1 Score: 277 bits (708), Expect = 3.320e-91 Identity = 141/168 (83.93%), Postives = 146/168 (86.90%), Query Frame = 1
Query: 1 MSMKQGGNPARSRIEHA-VAVAVAVSVVALSTASVPAALAEELPAGTNPFTSICMGFGCGSFQGLEYPGSPAPTDEDSITFKSFLDSLDKGLVAKVDFLAGGNKAYAFVKPSATGEPTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVPYHFEYDLGPGRATQTVAK 501
MSMKQG P RSRIE A VA AVA SV LSTASVPAA AEELP GTNPFTSICMGFGCG FQGL+YPG+PAPTDEDSITFKSFL SLDKGL KVDFLAGG+KAYAFVKP A GE TRIRVGEGYP+EQ WSSPLWVVRALNDRNVPYHFEY+LG GRATQTVAK
Sbjct: 39 MSMKQG-TPLRSRIERAAVAAAVATSVAILSTASVPAAFAEELPPGTNPFTSICMGFGCGEFQGLDYPGAPAPTDEDSITFKSFLQSLDKGLDTKVDFLAGGDKAYAFVKPDAAGEATRIRVGEGYPNEQGNSWSSPLWVVRALNDRNVPYHFEYNLGKGRATQTVAK 205
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: A0A7S2G0Q6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0Q6_9STRA) HSP 1 Score: 112 bits (281), Expect = 4.390e-27 Identity = 65/163 (39.88%), Postives = 93/163 (57.06%), Query Frame = 1
Query: 16 GGNPARSRIEHAVAVAVAVSVVALSTA-------SVPAALAEELPAGTNPFTSICMGFGCGSFQGLEYPGSPAPTDEDSITFKSFLDSLDKGLVAKVDFLA-GGNKAYAFVKPSATGEPTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVPYHFEYDLGPGR 480
G + +R + AVA A V+A + A S P A + L G NPF S CMGFGC +GL Y G+ AP +S+ + SFL ++ VA V+F+ G+ AYA +K + RIR+GEG P+E+ GWSSP++V+R L+++ VPY F + P R
Sbjct: 15 GASSSRRELLGAVASAXXAQVLAGAAAPAFADELSTPEANQQLLKTGVNPFNSACMGFGCSDAKGLRYGGAEAPEGIESLPYSSFLKMVESKEVASVEFIPPSGDVAYAILKE----DNKRIRIGEGMPEEKGNGWSSPMYVMRILDNKGVPYKFAFKKLPYR 173
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: A0A7S2WW10_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW10_9STRA) HSP 1 Score: 110 bits (275), Expect = 6.390e-26 Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 118 EELPAGTNPFTSICMGFGCGSFQGLEYPGSPAPTDEDSITFKSFLDSLDKGLVAKVDFLA-GGNKAYAFVKPSATGEPTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVPYHFEYDLGPGRATQ 489
+ L NPF S CMGFGC +GLEY G+ P E+SI F FL+ L+ VA V+FL G+ AYA ++ ++ RIR+GEG+P+E WSSPL+V+R L ++ VPY F + P R +Q
Sbjct: 87 QLLSDSVNPFNSACMGFGCSDARGLEYGGAAKPDSENSIPFSRFLELLEAKKVASVEFLPPSGDVAYATLEDNS-----RIRIGEGFPEELPGAWSSPLYVMRILQNKGVPYTFAFKKVPYRGSQ 206
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: W7TQH3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQH3_9STRA) HSP 1 Score: 106 bits (264), Expect = 6.000e-24 Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 1
Query: 151 SICMGFGCGSFQGLEYPGSPA-PTDEDSITFKSFLDSLDKGLVAKVDFLAGGNKAYAFVKP-----SATGE-----PTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVPYHFEYDL-GPGRATQTVA 498
S C+GFGCGS+ G +Y G+P T E +I SFL +++ + KV+ L GGN AYA+V P GE R+R+GEG+P E K WSSPLW+VR L D+ +PY +D G + T+ ++
Sbjct: 117 STCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALS 244
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: A0A8J2SCX3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCX3_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.970e-21 Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 100 VPAALAEELPAGTNPFTSICMGFGCGSFQGLEYPGSPAPTDEDSITFKSFLDSLDKGLVAKVDFLAGGNKAYAFVKPSATGEPTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVP 447
VPAA A+ +P +PF S+C+GFGC S QG++ PG+PAPTDEDSI +K L+ ++ V V+F A K R RVGEGYP E + WSSPL+V R L++ +P
Sbjct: 34 VPAARAD-VP--VDPFNSMCLGFGCNSPQGVDSPGAPAPTDEDSIPWKQALELIEAKKVKSVEF-----NDVAMDKCWVVTSDGRFRVGEGYPIEDGRSWSSPLFVTRILDNNQIP 141
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: A0A8J5X1D7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X1D7_DIALT) HSP 1 Score: 93.2 bits (230), Expect = 9.830e-20 Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 145 FTSICMGFGCGSFQGLEYPGSPAPTDEDSITFKSFLDSL----DKGLVAKVDFL-AGGNKAYAFVKPSATGEPTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVP--YHF 456
F S C+GFGC ++ G + G APTDE ++ F F L + VAKVD AGG+K Y + + T+ R+GEG P + S GWSSPLW+VR L++ NVP YHF
Sbjct: 63 FDSTCLGFGCNNYNGQGFGGMAAPTDEATMPFAQFAAQLKDPEQRARVAKVDIYGAGGDKVYV-----SFADGTKARLGEGLPIDDSNGWSSPLWLVRILDNVNVPHAYHF 168
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: A0A7S0G3P3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3P3_9RHOD) HSP 1 Score: 81.3 bits (199), Expect = 1.500e-15 Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1
Query: 70 VSVVALSTASVPAALAEELPAGTNPFTSICMGFGCGSFQGLEYPGSPAPTDEDSITFKSFLDSLDKGLVAKVDFLAG-GNKAYAFVKPSATGEPTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVPYHFEY 462
+ VA+ + +A+AEE + G + GL+ G+ A E+SI + FL+++ V +VDF G+ AYA V RIRVGEG+P E+S+G+SSPLWV R L+++++PY F Y
Sbjct: 2 LGAVAMGVGTAESAIAEEWE------------YAAGGYGGLDDKGALAVKGEESIDYMKFLEAVGDKKVERVDFYGPMGDIAYAVVGGK------RIRVGEGFPVERSRGYSSPLWVARILDNKSIPYKFHY 115
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: A0A7S0YV26_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YV26_9CRYP) HSP 1 Score: 79.3 bits (194), Expect = 2.840e-15 Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 214 PTDEDSITFKSFLDSLDKGLVAKVDFLA-GGNKAYAFVKPSATGEPTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVPYHFEY 462
PTDE+S++FK F D L+ G V +VDF G+KAYA K +IR+GEG+P E SSPL+VV+ L D+ VPY F +
Sbjct: 11 PTDEESVSFKEFFDGLNAGRVERVDFYGYSGDKAYATFKDGK-----KIRIGEGFPVEIGNEASSPLFVVKLLGDKGVPYKFHF 89
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: A0A7S1EHC1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EHC1_HEMAN) HSP 1 Score: 75.9 bits (185), Expect = 3.020e-13 Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 172 CGSFQGLEYPGSPAPTDEDSITFKSFLDSLDKGLVAKVDFLA-GGNKAYAFVKPSATGEPTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVPYHFEY 462
C + +EY G PTDEDSI+F F+ + G V +VDF G++AYA K RIR+GEG+P E SSPL+VVR L + +PY F +
Sbjct: 70 CKQWCTVEY-GQAKPTDEDSISFNEFVQGVYGGTVDRVDFYGYSGDRAYATFKDGK-----RIRIGEGFPIEVGNEASSPLFVVRLLGQKQIPYKFHF 161
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Match: A0A0M0K4H8_9EUKA (Trifunctional enzyme subunit mitochondrial-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K4H8_9EUKA) HSP 1 Score: 71.6 bits (174), Expect = 1.630e-10 Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query: 115 AEELPAGTNPFTSICMGFGCGSFQGLEYPG-SPAPTDEDSITFKSFLDSLDKGLVAKVDFLAG-GNKAYAFVKPSATGEPTRIRVGEGYPDEQSKGWSSPLWVVRALNDRNVPYHFEYDL 468
A++L G + C+GFGC + ++ G AP E+S+ + FL ++ V V F GN+AYA + + +R+G+G+P E S WSSP+WVVR L + VPY + ++L
Sbjct: 48 ADQLSEG-GALGATCLGFGCNPYGRPDFNGLEDAP--ENSMPYPDFLKAIKDKKVEGVVFQPPMGNEAYAIIGGKS------VRIGKGWPVEVSNSWSSPVWVVRILENEGVPYAWNFNL 158 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig763.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig763.19.1 >prot_P-littoralis_Contig763.19.1 ID=prot_P-littoralis_Contig763.19.1|Name=mRNA_P-littoralis_Contig763.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp MSMKQGGNPARSRIEHAVAVAVAVSVVALSTASVPAALAEELPAGTNPFTback to top mRNA from alignment at P-littoralis_Contig763:71614..74052+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig763.19.1 ID=mRNA_P-littoralis_Contig763.19.1|Name=mRNA_P-littoralis_Contig763.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2439bp|location=Sequence derived from alignment at P-littoralis_Contig763:71614..74052+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig763:71614..74052+ >mRNA_P-littoralis_Contig763.19.1 ID=mRNA_P-littoralis_Contig763.19.1|Name=mRNA_P-littoralis_Contig763.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig763:71614..74052+ (Pylaiella littoralis U1_48)back to top |