mRNA_P-littoralis_Contig762.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig762.8.1
Unique NamemRNA_P-littoralis_Contig762.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig762.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig762contigP-littoralis_Contig762:59981..62981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1231
Hectar predicted targeting categoryother localisation
Exons4
Cds size672
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.9375458-UTR-P-littoralis_Contig762:59980..601331680791574.9375458-UTR-P-littoralis_Contig762:59980..60133Pylaiella littoralis U1_48UTRP-littoralis_Contig762 59981..60133 +
1680791574.954998-UTR-P-littoralis_Contig762:60891..609661680791574.954998-UTR-P-littoralis_Contig762:60891..60966Pylaiella littoralis U1_48UTRP-littoralis_Contig762 60892..60966 +
1680791574.9679296-UTR-P-littoralis_Contig762:61231..613591680791574.9679296-UTR-P-littoralis_Contig762:61231..61359Pylaiella littoralis U1_48UTRP-littoralis_Contig762 61232..61359 +
1680791574.9789462-UTR-P-littoralis_Contig762:62108..623091680791574.9789462-UTR-P-littoralis_Contig762:62108..62309Pylaiella littoralis U1_48UTRP-littoralis_Contig762 62109..62309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.9925227-CDS-P-littoralis_Contig762:62309..629811680791574.9925227-CDS-P-littoralis_Contig762:62309..62981Pylaiella littoralis U1_48CDSP-littoralis_Contig762 62310..62981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig762.8.1prot_P-littoralis_Contig762.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig762 62310..62981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig762.8.1

>prot_P-littoralis_Contig762.8.1 ID=prot_P-littoralis_Contig762.8.1|Name=mRNA_P-littoralis_Contig762.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MGGGSFAVGLTSISQVPARRTRRGNQASFRDADRRRSAPPSAGGTAPASA
QTPSSSQGGEAARCGRKRRSEGDARPKASQKVSKRGPKPPCGVKACGETG
DWSNPCQSCGSVSHAGQYLCFACHRPTKMNSGKPRWRHFQETDLNEVDSW
WPQVHPDVWTPLRGDYTPSKHCVCSHSDCVAAAYQRYRKNARSSACIRCE
TCGTRTTPHWRTAGIRYGYMHTFF
back to top

mRNA from alignment at P-littoralis_Contig762:59981..62981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig762.8.1 ID=mRNA_P-littoralis_Contig762.8.1|Name=mRNA_P-littoralis_Contig762.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3001bp|location=Sequence derived from alignment at P-littoralis_Contig762:59981..62981+ (Pylaiella littoralis U1_48)
GGTCCTTGATCCGAAGCAAAAATTGGCAGAGGTGTTGAGTCGACACTTTG
AGGGACTCGAACTACATCGTGGGTGGTGCAATCGATTGGTTTCGGATTTC
GCGAAGTGTATATATGGATCGGTGCTGGCTGCTGGTGGAACTTGGGGCAA
CAAGTGAGTGCAGTGTGGGATGATGTATAGTCTAGAGAAGTAGTGCATAT
CCGACCGAGCACTTGCACTGCTGTACTGTTGTACTACTCAACACATGCAT
GGGCACTGCTGCTGAGGTCGCGCAGTAGTGTAACGAAGGGCTGTCTATAC
GGGGAAGATTCTGGTGCCTGCCCAGTTATAGACGGAGGTCCAGAGGAAGG
CTGCTGGCCGCTTCACCGCGATGACGATGGAGGTGTGTTGTGTTGTGGTG
TGCTGTGTTGGCTGTTTGATTTTGTCATCTGGTACCCCTGCTGCTTGTGT
GCGTGTGCCGTGCTGTGCTCGTCACCCGGGGCAGGGCAATGAACTGCCTT
GCTCGATTGCTGTGTAGATTGCAAAGCGTCACGAAGGGCTATAGCGAGGA
TGGATTTTATTCTACACATGTGTAAAGGTATCTTGTTGTGCAGCAGGACG
TGTTTGATAAATCTCTCCGCACCAACACATGAACATGATGCAATACACCT
GTTTAGTCTGTAGCACAGCAGACAGCTGTATTCATATTCTACACAGCAGT
ATACTAGTGCTGTACCAGCACCCACCTGTGTATGGCCCGTACAGCAGTAC
TACTCTACACAGCAGTATACCAGGTATCTACTTATGTTTGTAGAAAGAAA
CGCGCACGTGCAAATCATCGTCCTTGGTGATGTACGAGTACTCAGCCAAA
TTCGAAGAAAGGAAGAAATACTGAACGAGCGTCAATCTGTATGCTGAATG
AATGTTGGCAGGTGGGAAGGACGTTGGTCTGCCGTGTGTTTGGATCCGGT
GTTAGGTGTCTACAAAGGCATTGAAGGACGAAGCAGGTGAGATGGATGGG
TTCAAACCGTTGTTGCCTGATGCTCCGGGCCGGGCCGGATTGTGGGAATA
TCGTGCCCTGTTAGTCGAATTCTTGCGGCCATGATCGATGTTCAGGGAGT
CTTTCCCTCGTCAGATATGTCGGTATTATCGTTAGGTTGCTCAGTTGACT
TACTTTACAGTCTATACCTGGTACGTGTTTTTCAGCCGTTTATGCGGAGC
ACTTTTGGATCATCATTGCTGTTACTTTGTCCTGCCCCCCGCCGCGAACA
GCAATCGTGAAGCCTCATTTTCTCCTGGTGGTTCATCGGATACCGAAGTG
GGTGCGATCTTTGTGAAGCACGCTGCTCGGACCAGCGTTCTCGTCGGATT
ACGCCGGAGACGGACCAACATCGCCCTTGGTGAGCTGCATAGATGTTTTG
TTTGTAAGGATCGTTTGAAACATTCCGAAAAAAAATGTTGCAATTCACGA
CAAAATACAACCAGCGACAGGCAGAGGGCAGGTACGATAATGAAGAGGGT
ATTTGTTCTTGTTTGGGGGAAGGTACTGACAACGTGTATTCGATGTGGTG
TCGGGACGATATGCATGTCGCGCTTGCCGCTCCACAGCCCAAAACCTTGG
CCATGCCCGACAGATCATAGGCACATGTCCGTGCTCCTCCAGTTGGCAGA
GCTTTACGTGGTTTGTTCAGCGATTTCTGCGCGAAGACGTGAACCGCTCT
CCTGCGGTGGAAACGTCAATGGATGTGGTTTTGTATGGCAGCATCAGTAG
GAGCGTGTTGCAAGTTAACATATATTGTCCAGGCGCGTACAACAAGTGAC
GCCCTCAAACCTTAGCCATGTTCGATGGACGATACACATATGTCTCTAGG
GGGGCAATTTGCTCCGAGTCTACTCCTCTTTTCCGCGCGGTATCGTTGAT
CGTGTCAAAGCGAATGTTGTTGGGTGATGTGATGAACAAACACGGACGAG
GAGAAAAAACATGACAACAAAATCAATAAATGAATAATTAGATGAAACGA
TTTTTTTTGTGCCCCCTGGTTAAAATGACCTGCACACGTGTATAAAAATT
TGACAACCCTAACCCTCTTAAAGTGTCTTACTGATGCCCCGCTATCATTC
TTTTTTTTTAACTATCCTCTGCATGCAGCCGCAGTCACACCGTGATGCAC
AAGCGCAACGGTCGGCCGGGCATGGAGGTGGCAGTAACACGGTCGTAGGG
GTCACTTCTGAGGGTGAAAGGGGGGCGGGGCTTGAGGCAGACGAAGTAGC
GAGACAGTCACGCTCATCAGCGCAGGAGATGGGCGTGGACGAAAGCAATT
AATCGCTCTCGGGGGCGCAAGGTGTAGTGATGGGCGGAGGATCGTTTGCG
GTGGGTTTGACGTCGATATCCCAAGTACCAGCCCGAAGAACAAGGAGAGG
GAATCAAGCTTCGTTTCGAGATGCCGATCGTAGACGTAGCGCACCACCGT
CTGCAGGAGGGACAGCTCCGGCTTCAGCACAGACGCCTTCATCGTCACAG
GGAGGGGAGGCAGCGAGGTGTGGTCGCAAGCGGCGAAGCGAAGGTGACGC
CCGCCCCAAGGCATCGCAGAAAGTATCAAAGAGGGGGCCCAAACCACCTT
GTGGTGTCAAGGCATGCGGTGAAACGGGTGATTGGAGCAATCCCTGTCAG
AGTTGTGGAAGCGTTTCCCACGCTGGACAGTACCTCTGCTTCGCGTGCCA
CCGTCCGACGAAGATGAACAGCGGGAAACCAAGATGGCGACACTTCCAAG
AAACTGATCTGAACGAAGTGGACTCATGGTGGCCCCAAGTACACCCCGAT
GTCTGGACTCCACTCCGTGGCGACTATACGCCGAGCAAGCATTGCGTGTG
CTCCCACAGTGACTGCGTAGCGGCGGCGTACCAACGTTACAGGAAAAACG
CCCGCAGTAGCGCGTGCATCAGGTGCGAGACTTGTGGCACTCGTACCACC
CCCCATTGGCGCACGGCGGGAATCAGATACGGCTACATGCATACTTTCTT
C
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig762:59981..62981+

>mRNA_P-littoralis_Contig762.8.1 ID=mRNA_P-littoralis_Contig762.8.1|Name=mRNA_P-littoralis_Contig762.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig762:59981..62981+ (Pylaiella littoralis U1_48)
ATGGGCGGAGGATCGTTTGCGGTGGGTTTGACGTCGATATCCCAAGTACC
AGCCCGAAGAACAAGGAGAGGGAATCAAGCTTCGTTTCGAGATGCCGATC
GTAGACGTAGCGCACCACCGTCTGCAGGAGGGACAGCTCCGGCTTCAGCA
CAGACGCCTTCATCGTCACAGGGAGGGGAGGCAGCGAGGTGTGGTCGCAA
GCGGCGAAGCGAAGGTGACGCCCGCCCCAAGGCATCGCAGAAAGTATCAA
AGAGGGGGCCCAAACCACCTTGTGGTGTCAAGGCATGCGGTGAAACGGGT
GATTGGAGCAATCCCTGTCAGAGTTGTGGAAGCGTTTCCCACGCTGGACA
GTACCTCTGCTTCGCGTGCCACCGTCCGACGAAGATGAACAGCGGGAAAC
CAAGATGGCGACACTTCCAAGAAACTGATCTGAACGAAGTGGACTCATGG
TGGCCCCAAGTACACCCCGATGTCTGGACTCCACTCCGTGGCGACTATAC
GCCGAGCAAGCATTGCGTGTGCTCCCACAGTGACTGCGTAGCGGCGGCGT
ACCAACGTTACAGGAAAAACGCCCGCAGTAGCGCGTGCATCAGGTGCGAG
ACTTGTGGCACTCGTACCACCCCCCATTGGCGCACGGCGGGAATCAGATA
CGGCTACATGCATACTTTCTTC
back to top