mRNA_P-littoralis_Contig762.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig762.30.1
Unique NamemRNA_P-littoralis_Contig762.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig762.30.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.210e-6
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   13 GESTALSEEGLRLLTVLEAAVRATLSAAEQVMEAASQARIEVEVICAPIYAQMTKKEARSTEVPLHGMEGPWEP 234
            G + +LS+ G  +L     AV     AA +V + A   R ++E  CA ++  M++KE R+T+VPL G+ GPWEP
Sbjct:  431 GGAESLSDRGKAMLDSFYQAVMDATGAARRVSDVADSTRADLERACAGVHGHMSEKEKRTTQVPLAGIPGPWEP 504
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BLAST of mRNA_P-littoralis_Contig762.30.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.250e-6
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   13 GESTALSEEGLRLLTVLEAAVRATLSAAEQVMEAASQARIEVEVICAPIYAQMTKKEARSTEVPLHGMEGPWEP 234
            G + +LS+ G  +L     AV     AA +V + A   R ++E  CA ++  M++KE R+T+VPL G+ GPWEP
Sbjct: 1098 GGAESLSDRGKAMLDSFYQAVMDATGAARRVSDVADSTRADLERACAGVHGHMSEKEKRTTQVPLAGIPGPWEP 1171
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig762.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHR1_9PHAE1.210e-639.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU55_9PHAE1.250e-639.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig762contigP-littoralis_Contig762:124341..124773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size249
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.883931-CDS-P-littoralis_Contig762:124341..1244221680791574.883931-CDS-P-littoralis_Contig762:124341..124422Pylaiella littoralis U1_48CDSP-littoralis_Contig762 124342..124422 -
1680791574.8987164-CDS-P-littoralis_Contig762:124608..1247731680791574.8987164-CDS-P-littoralis_Contig762:124608..124773Pylaiella littoralis U1_48CDSP-littoralis_Contig762 124609..124773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig762.30.1prot_P-littoralis_Contig762.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig762 124342..124773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig762.30.1

>prot_P-littoralis_Contig762.30.1 ID=prot_P-littoralis_Contig762.30.1|Name=mRNA_P-littoralis_Contig762.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
PETEGESTALSEEGLRLLTVLEAAVRATLSAAEQVMEAASQARIEVEVIC
APIYAQMTKKEARSTEVPLHGMEGPWEPPNQD
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mRNA from alignment at P-littoralis_Contig762:124341..124773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig762.30.1 ID=mRNA_P-littoralis_Contig762.30.1|Name=mRNA_P-littoralis_Contig762.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=433bp|location=Sequence derived from alignment at P-littoralis_Contig762:124341..124773- (Pylaiella littoralis U1_48)
CCTGAGACCGAGGGGGAGTCCACGGCTCTGTCCGAGGAGGGTCTGAGGTT
GTTGACGGTGTTGGAAGCGGCGGTACGGGCGACCTTATCCGCCGCGGAGC
AGGTCATGGAAGCAGCTTCGCAAGCTCGCATCGAAGTCGAGGTCATTTGT
GCACCTATTTATGCCGTGAGTGGGTCCCATACTCGTGCATGTAATCGTTG
TGTGCTTACGTAAATGGTCTCGTATTGAGTGCCAGAGGCACAGCAACATA
CACCGGTAGGACGCTCTAATGATATCTGCTTCATTTGTTTTCCCTTTATG
TTGATATCAAATACATAACGGCTGCCCGTGACTGCCTATCCGCTTGCTCA
GCAAATGACCAAGAAGGAGGCAAGGTCGACTGAGGTCCCCCTGCACGGCA
TGGAAGGGCCTTGGGAACCGCCTAATCAGGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig762:124341..124773-

>mRNA_P-littoralis_Contig762.30.1 ID=mRNA_P-littoralis_Contig762.30.1|Name=mRNA_P-littoralis_Contig762.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig762:124341..124773- (Pylaiella littoralis U1_48)
CCTGAGACCGAGGGGGAGTCCACGGCTCTGTCCGAGGAGGGTCTGAGGTT
GTTGACGGTGTTGGAAGCGGCGGTACGGGCGACCTTATCCGCCGCGGAGC
AGGTCATGGAAGCAGCTTCGCAAGCTCGCATCGAAGTCGAGGTCATTTGT
GCACCTATTTATGCCCAAATGACCAAGAAGGAGGCAAGGTCGACTGAGGT
CCCCCTGCACGGCATGGAAGGGCCTTGGGAACCGCCTAATCAGGAC
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