mRNA_P-littoralis_Contig762.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig762.24.1
Unique NamemRNA_P-littoralis_Contig762.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig762.24.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.470e-7
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 2 
Query: 1367 GYCRQADEIVIVAKALESDPLYYESAKDLGACGAG*QCPPHDCTKAALKMFAGGDEDGVPLEIVRALCKY 1576
            GYC        +AK + +  +YY++  DL A GAG QC   +C  AALK+F+G    G+P EIVRA+C Y
Sbjct:   18 GYC--------LAKRVRNQ-VYYDTPTDLLAKGAGNQCTAAECMVAALKVFSGKGNKGIPTEIVRAMCMY 78
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BLAST of mRNA_P-littoralis_Contig762.24.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.280e-6
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 2 
Query: 1367 GYCRQADEIVIVAKALESDPLYYESAKDLGACGAG*QCPPHDCTKAALKMFAGGDEDGVPLEIVRALCK 1573
            GYC        +AK + +  +YY+++ DL   G G QC    C KAAL++FAG   DG+P EIVRA+CK
Sbjct:  120 GYC--------LAKRVRNQ-VYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig762.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMB2_9PHAE1.470e-744.29Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG3_9PHAE2.280e-644.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig762contigP-littoralis_Contig762:115832..122002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1920
Hectar predicted targeting categoryother localisation
Exons4
Cds size1125
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig762.24.1prot_P-littoralis_Contig762.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig762 116129..121504 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791575.4724119-UTR-P-littoralis_Contig762:115831..1161281680791575.4724119-UTR-P-littoralis_Contig762:115831..116128Pylaiella littoralis U1_48UTRP-littoralis_Contig762 115832..116128 +
1680791575.551052-UTR-P-littoralis_Contig762:121504..1220021680791575.551052-UTR-P-littoralis_Contig762:121504..122002Pylaiella littoralis U1_48UTRP-littoralis_Contig762 121505..122002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791575.4847908-CDS-P-littoralis_Contig762:116128..1162591680791575.4847908-CDS-P-littoralis_Contig762:116128..116259Pylaiella littoralis U1_48CDSP-littoralis_Contig762 116129..116259 +
1680791575.4952111-CDS-P-littoralis_Contig762:116749..1170021680791575.4952111-CDS-P-littoralis_Contig762:116749..117002Pylaiella littoralis U1_48CDSP-littoralis_Contig762 116750..117002 +
1680791575.5136478-CDS-P-littoralis_Contig762:119808..1204961680791575.5136478-CDS-P-littoralis_Contig762:119808..120496Pylaiella littoralis U1_48CDSP-littoralis_Contig762 119809..120496 +
1680791575.531519-CDS-P-littoralis_Contig762:121451..1215041680791575.531519-CDS-P-littoralis_Contig762:121451..121504Pylaiella littoralis U1_48CDSP-littoralis_Contig762 121452..121504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig762.24.1

>prot_P-littoralis_Contig762.24.1 ID=prot_P-littoralis_Contig762.24.1|Name=mRNA_P-littoralis_Contig762.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=375bp
MCSFATLKAAMLLVKSRFGFADEGRDRGPLLARKKSHACTAEGRYGEMGD
SQPPATAMGDKQRRVILRINPGYGCDRCGMEFVSHRNGKIHFAARQSSRE
AGPLKPSIPRYDHDGNNGIDSSGWAPAGSSTADGACGETAQRRPWTRAQC
RRTRRESSKGVLQMDSTSVPSAKRARKSSMGTKRTMAEEGNGARVERRQQ
HQQQEHQHQHQQGQQDEREPKEEELDGPHAPEGRKVGAAPAETPVFRSMT
ARPSGATSHDEEDTLFGAPVIGPELPRLRGVPPSTSDEAAVLLLWEHAKR
SPETIRDRVKDLAKELATAAGCPHGPELVTFSQNKRAARTCGQHQAHVLA
ALNMQARLLPASRRDRYSRKSAGV*
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mRNA from alignment at P-littoralis_Contig762:115832..122002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig762.24.1 ID=mRNA_P-littoralis_Contig762.24.1|Name=mRNA_P-littoralis_Contig762.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6171bp|location=Sequence derived from alignment at P-littoralis_Contig762:115832..122002+ (Pylaiella littoralis U1_48)
TGCACTGAAGACCCAGAAGGGTTAACAGCGATATCGTGGTCAGATACGAC
AAGCCCCGTCTTCAACTAGAAGGCGCCGTTCTGGACTCATCTAAATCGGG
GCGGCCCCCTCATGCAGCAAACGCAATCTCTTGGACGATGGGAATGGAAT
GGACGGAGCAGCACGTCTATACCTATTCGTCTGCTGCTGTACTTACGGGT
TACAAGTCCAAAGACAGCCCGACTATCTTACACCCGGTGGACTAGTGGTC
CCTCGTTAACCACAGATGCAGAGGAACGGGGGTTCGATTCCCGGTGAATG
TGTTCCTTTGCTACTTTGAAAGCGGCTATGCTGTTAGTAAAAAGCAGATT
CGGCTTCGCCGACGAGGGTAGGGACCGCGGACCCCTGCTCGCGAGAAAAA
AATCTCACGCATGTACCGCAGAAGGAAGGTGGGGGTAACTCCTTCTGTGT
TGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGCA
GACTAGTGTGCCAGAGAATATGGGATGACAACACAACACAACATGTGGTA
TGTGGCTCGCGCATTTGGTATCTGCTCTCCTGCTCCCCTCAGGTTTAGAG
CACAACTGTGTCAGCTGAACGAGCGGACATGTGTGTGAGCTGGACAGGTG
ATAGGGTGTCTTGCTCCTCCCTCTTCCTCGGGTTCGATGCGCTACAATCG
TGCATCATATACCACCAAGTCGATGATGATGCATGGATGCGGGGCCCGGT
GCCTGGTGGCTAGAGGCACCGCAATATACTCTATTTTATTAAAAACTTAC
CAAAACATCAATTTGTAATTTGTACATCTACCAGGTTTCATGCGGAGAGA
TTGTCGAACAGTGATCCCAGAATCATGATCACACACACGCTCTGCTGCTC
GTTCTTTGTGGCAACCAGGTACGGCGAGATGGGCGACAGCCAGCCGCCAG
CTACGGCGATGGGCGACAAACAGCGGCGGGTAATCCTGCGCATTAATCCT
GGCTACGGATGCGATAGATGTGGCATGGAGTTCGTTTCTCATAGGAATGG
AAAAATCCATTTTGCAGCTAGGCAAAGCAGCAGGGAGGCGGGACCGCTGA
AGCCATCCATACCTCGCTATGATCACGACGGCAACAACGGCATTGATTCG
AGCGGCTGGGCACCTGCGGGGGTAAGTAATGTGCCCCACTGTAATCGATA
GCAGGTTGTTGGTAAAGATACATCGTGTTCTCTCACGCATATGGGATTCT
GGAAGAGCTAGCACACACGCTGTCGAACTCCCCTTTTGCATAGAAAGTCA
TATGCTCTTGTGGATACCATATTTTATTCCACGTATTATACAGGCTGATT
TAAGGGACCCTATTCACCGGTTCATTTAACAGTATGAACGAACCCCAACA
TTTTCAACCATTTTTTGACATTTTCTGAAATGAAACCGTCAAATTTCTGC
GTTATTGGGGAGGGGATGGTAAGGGAGTAAATATAGCGCAGCAGAATACT
GCGGGCGCCATCCGCGGTAGAGGTAAATTGGCCCTCCGCACCTCAAAAAG
AAAAAAAATCAAAAGCGTTTTTTTTCTGTCGCTTTTAAAGAGCCCAAACC
GTCGTCTAAAAGAGAGCGACAAAAAAAAAAAGTTTCGGATCACCTAGAAC
CTGGTTCCAATTGTTTTTTTCGCCTCATTCCCGAACTTTTTTTTTTTTGT
AGCTCCTCGGGAATCGCTTCCGCTTGGGCGATTAAGGGGGGATAGAGCCA
CTCAGAAAGTAGATCGGACACAAACTGAGGTGCGCACAGGCTCGAGTATG
AACGCCGCTGGTGGGCAGATGCCAGCCGTGTCAAAGCCTGGGAAGTGTGA
ATGTCACGTGGCCCTTGGCAAAACAACCCACGTCATCACACACAGCTGGC
GACTAGCTGGAGAGCAGGGGCTTGAGTTTATCACAACGCTCCTGGACAGC
AAACAGAAGTCCAGGGTCGGTAACAAGAAGAAGCAGTATGTCAAGAACGA
CGAAGATGCTTTGGCCTCGGCGGCAGCGGATGCGGCTCACAGCATTCTGA
AGAACAAGCGAGATTGGTTCCTGAAGACACAGGGACAGGGGAAGGCTGGT
GGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAATGCCGACGTCGAATTAGC
CGATCCGGTGATTACGGCTCTGCGGGGTGGCCGATGGACCCGATCTGGGG
TGGCAACGCACCGGCAAGATGAGCAAGAAGAAGTGAGATGACGGAAACCC
CTCCCGCATCAGCATGATGATGCCCGTTTATCCGCAGACGACGCTCATCA
TTGTGGCGATCGCCCATTTCAGCCCTCAGATCCTTCCTGGGGGTGGCAGG
GTACACGTGACAGAGACTTGGATCTTGGCGTCGGAGGACATGAAGCACGA
TTGCGATTTCCACCTGCATGGCCTTGCCAAGATCGCGGACTACTACCTGT
ACGGCGAAGGGAGCGACGCCACTGCTTCCGCCCGAAACAACGACCGGACG
CCTCGGATACACATGTTCACGGATGGATGCGGGAAGCAGTACAAGGGGAA
GCGGAACTTTCGCTTTCTGGCGGACAGCGTGCGGCAGATCGGGTTTTTCG
TTGACCACCACTTTGCGGCTACGTCTCACTTCAAAGGTTGCCACGATGGC
ATCGGCTGCATAGCAAATAATGCCATGAAGAACCATGAGCGGTTTGGCAA
GCGCATCGTGGGGGCGAACAAGGTGGTGGACTTCTTGCGGAAATTTTTCC
GCCAGAAGGGGGGCAACGGTGAAGAGGACATGCGGAAGTACTTCGCGTCA
TGGTCTCCGTACCGCATCCGCAAGGTGCACGTGGAGCATATCGGCAAGAA
CGAGATCTACCGGCCCGGCTCGGAGCTGGACGGTATAGACGGAACGCGTG
TGATGTACCACTTTGCGGGAGCGAACATTCCGAGCCACCAAGCGGCTACC
ACAACGGACGGACTGCAAGACATCGAGCTAGTGCTAAAAAAGAGGGGGGG
GGGCGGTTGTCGCCGACAGAGCAGGAACGGTTGGCGGAGCTGGGGAGGTC
AAGGTGTTGGAAAGTAAGGGGAGTTGGAAAGACGTTCAAGCACCGACACC
TCTTGCATCGGGGGTAGAGACGGTTGTCGCCCGGAAGGTTATTAGACGGT
ACAGCGTTAGGACCCGGTTGGCGTCTTGTTTTTGCTCCTCGTGCCAGATC
TCGAAGTATGACGAGTGCCACATCAACAGCGAGTACCCAAACCTCGTTCC
TAAATTTAAGAACGGCGAAGTGAGGGAGAAGGTCATCATGGACACCGGGG
TAAGGGCCGTAGGCGTAGGTGGGCCTGAGGATATCAAGTTCGGGCCCCGG
CAGAAAACATGTACGGTGTCGAGAGTTTCTGGGACCCAGTGGCATGAGAG
CGATCAGATCAAGGCTCAAGACATGTTGGAGGAGCCTGGATGGGAGGAAG
AGCCCGCATCTGTTGCCTAAGTGGTGTAGTGCGGAGACTGCAGTGTTCAG
TGTGCCGGGCTTGCATGTATGTACAGAGGTTTGATTGACTTTTTTTTTGT
CAAAAAAGGTCGAAACCTGGGGCGGGTGGGGTGATAACTGTAAAATATTT
ATTGAAAAATGACTTTTTTCTGGAGCATCAATGCTGCTGTTCGCGATAGT
CCGTAGCTTCACACCAAAAACGAGGAAAAAACATCTGATCGCATATTCGT
GATCCCCGCCCCAAAATTAGCCTACCCTGCATTTTTTCACGTCAATCAGG
CGTTTTCTCAAACCCGGGGATGTTTTCGAGCCATCCCCGCTTTGTGCGTT
TTCTCGATTTTCCTTAGGGATTTTCCATAAACTAGTTGAAACCCGGCAAT
AATCGGTCGGATTTTTTTTTTGTAATATTGAAACCCGATTTTCATGCCCC
AATAAGAGTGATATAATTTTTTCAGACCTTAGCCGGGGATTTTTCGTCCC
CATCCCCTCCTTATGGCTAAAACGCAGTCATCTACCGCGGATGGCGCCTG
CGGTGAAACAGCGCAACGCCGCCCTTGGACCAGAGCACAGTGTAGGCGAA
CAAGACGTGAATCAAGCAAAGGCGTGCTTCAGATGGATAGTACTTCTGTC
CCCAGCGCGAAGCGTGCCCGGAAGTCTTCGATGGGCACGAAGAGGACCAT
GGCCGAAGAGGGAAACGGGGCAAGGGTTGAGCGGCGGCAGCAGCACCAGC
AGCAGGAGCACCAGCACCAGCACCAGCAGGGGCAGCAGGACGAGAGAGAA
CCAAAGGAAGAGGAGTTGGATGGCCCGCATGCGCCAGAGGGCCGGAAAGT
TGGAGCAGCACCTGCCGAAACACCGGTATTTCGATCGATGACTGCCCGCC
CTTCCGGTGCTACTTCCCATGATGAGGAAGACACTCTGTTTGGCGCGCCG
GTGATCGGGCCCGAGTTACCGAGGCTACGGGGTGTGCCTCCAAGCACCAG
CGATGAGGCTGCGGTACTCCTCCTGTGGGAGCACGCGAAACGCAGTCCCG
AGACCATCCGCGACAGGGTGAAGGATCTGGCGAAGGAGTTAGCCACCGCA
GCAGGCTGCCCTCATGGACCGGAACTTGTGACCTTCAGCCAGAACAAAAG
AGCGGCGCGGACCTGCGGGCAGCACCAAGCTCATGTTCTGGCGGCGCTGA
ACATGCAGGCAAGGTGTCATAGCTGTATCATAGCATAGGTAAAAACCAAA
GTCGTAGCACCCCCGTACAGCAGCGGTGTCTTATCTCTTTACGTAGTTGG
CGAAGAGTAGGCAATCATAGCACCCAGCACAGACGATTACTTGCGATTCC
TCGGGAAGAACCCAGTACAAGTACAGCAGTAGCGGAGTGCTGTGTGGTGG
ATTTCCATACTGAATACAATATAGATCATGCAAGAGTACTGAAACGCATG
TACGTGACTCGTTCTGCCGTACAGACAGAGACACCACAAACAAGTACGGT
AGGCACGCATAGCACCCATCACAAACGATCACTTGCGAAAAAAAAAACTT
GGGAAGAACCCAGTAAATGTAGGGAGTGCTGTGTGTTGGTTGTCTATACT
GAATACATCACATTCAGTATACTGAATACATTACATTTTCATGAAAGAGT
ACTGACATGCCTTATCGGTACTCGTACTGCTGTACACGCAGTCAACCCCA
CACACAAGTACGGCAAAAACCACACTCTCGTGCCTTACGCTGCCCCCCTT
CTGTCACTTGATTTGTTTTGGAGTCGATTGCTGCGCTCGTCGTACAGATA
AATTGATACAGCACTCCGGATGTCAAACTGTTGCGTACTCGGAAGTAGGG
TGTGAGGATACGTTGCTGGCTGGAGACGTTGACTCGTGTGGTACAGTGAG
TATTGAATCGCAGTTTTTTTCCCACCGCAGTACTGCTGATACTCTGGGTA
ATCCTGGTGGTGTGGTACGTATGTTATGCAGCGGCTGCGGTGGAAAAACC
TTGACTAAAAATAATAAAGGGAAACGCTGCAAATTTACTCTACAACATAT
ATGAGCTCCATCCATCTGTACCGGGCGTGGCGGCGAACACAAAGACCGTC
AAACCACACGTCTTGTGTGCAAGTGCATAACTAAGAGTAATAAAGGAATT
CCTATTGGCATCGTCCTAAGTACTGCCGGCAAGCCGACGAGATCGTTATA
GTCGCAAAAGCGCTGGAGTCTGACCCTTTGTATTACGAGTCGGCGAAAGA
CCTCGGCGCGTGCGGGGCCGGCTAGCAGTGCCCGCCGCATGATTGTACGA
AAGCAGCGCTTAAAATGTTTGCTGGGGGTGATGAGGATGGAGTCCCGCTA
GAAATCGTGCGGGCTCTTTGCAAGTATTGAGAAACGGGTGCGCTCGGCAT
CCGTCGATTGTCTTTTAGGTGCGAATGGATTTCTTCTCTCACCTATTTAT
CGTGTTTGGTGCAAGTAGTTTCGGGTGGGTGTAGCGCGCAGTAGTATGAG
AGCCCGATTCTGCAAGGTGTGTCATAAATTTGCACATGTTGCACACATCC
TCTCAGTTGTGCAACGCTTCGAGGTAGCTTCTGTATGTAGGCAAGTACCA
GTAGGCTCGGTCCTTCTGGTTTCGACTGGTGTTTCTGCGTGTGTGCTGAG
GTTTTGTGTCTTGGGACGAGCAGGGGCTTGAATACCGAGGCAAATAGTAC
TTCGGGATACGCCGTAGCCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig762:115832..122002+

>mRNA_P-littoralis_Contig762.24.1 ID=mRNA_P-littoralis_Contig762.24.1|Name=mRNA_P-littoralis_Contig762.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1125bp|location=Sequence derived from alignment at P-littoralis_Contig762:115832..122002+ (Pylaiella littoralis U1_48)
ATGTGTTCCTTTGCTACTTTGAAAGCGGCTATGCTGTTAGTAAAAAGCAG
ATTCGGCTTCGCCGACGAGGGTAGGGACCGCGGACCCCTGCTCGCGAGAA
AAAAATCTCACGCATGTACCGCAGAAGGAAGGTACGGCGAGATGGGCGAC
AGCCAGCCGCCAGCTACGGCGATGGGCGACAAACAGCGGCGGGTAATCCT
GCGCATTAATCCTGGCTACGGATGCGATAGATGTGGCATGGAGTTCGTTT
CTCATAGGAATGGAAAAATCCATTTTGCAGCTAGGCAAAGCAGCAGGGAG
GCGGGACCGCTGAAGCCATCCATACCTCGCTATGATCACGACGGCAACAA
CGGCATTGATTCGAGCGGCTGGGCACCTGCGGGGTCATCTACCGCGGATG
GCGCCTGCGGTGAAACAGCGCAACGCCGCCCTTGGACCAGAGCACAGTGT
AGGCGAACAAGACGTGAATCAAGCAAAGGCGTGCTTCAGATGGATAGTAC
TTCTGTCCCCAGCGCGAAGCGTGCCCGGAAGTCTTCGATGGGCACGAAGA
GGACCATGGCCGAAGAGGGAAACGGGGCAAGGGTTGAGCGGCGGCAGCAG
CACCAGCAGCAGGAGCACCAGCACCAGCACCAGCAGGGGCAGCAGGACGA
GAGAGAACCAAAGGAAGAGGAGTTGGATGGCCCGCATGCGCCAGAGGGCC
GGAAAGTTGGAGCAGCACCTGCCGAAACACCGGTATTTCGATCGATGACT
GCCCGCCCTTCCGGTGCTACTTCCCATGATGAGGAAGACACTCTGTTTGG
CGCGCCGGTGATCGGGCCCGAGTTACCGAGGCTACGGGGTGTGCCTCCAA
GCACCAGCGATGAGGCTGCGGTACTCCTCCTGTGGGAGCACGCGAAACGC
AGTCCCGAGACCATCCGCGACAGGGTGAAGGATCTGGCGAAGGAGTTAGC
CACCGCAGCAGGCTGCCCTCATGGACCGGAACTTGTGACCTTCAGCCAGA
ACAAAAGAGCGGCGCGGACCTGCGGGCAGCACCAAGCTCATGTTCTGGCG
GCGCTGAACATGCAGGCAAGGTTACTGCCGGCAAGCCGACGAGATCGTTA
TAGTCGCAAAAGCGCTGGAGTCTGA
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