mRNA_P-littoralis_Contig762.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig762.23.1
Unique NamemRNA_P-littoralis_Contig762.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig762.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig762contigP-littoralis_Contig762:113098..114268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size664
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.81148-CDS-P-littoralis_Contig762:113097..1132371680791574.81148-CDS-P-littoralis_Contig762:113097..113237Pylaiella littoralis U1_48CDSP-littoralis_Contig762 113098..113237 -
1680791574.8232455-CDS-P-littoralis_Contig762:113745..1140011680791574.8232455-CDS-P-littoralis_Contig762:113745..114001Pylaiella littoralis U1_48CDSP-littoralis_Contig762 113746..114001 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.8364778-UTR-P-littoralis_Contig762:114001..1142681680791574.8364778-UTR-P-littoralis_Contig762:114001..114268Pylaiella littoralis U1_48UTRP-littoralis_Contig762 114002..114268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig762.23.1prot_P-littoralis_Contig762.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig762 113098..114001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig762.23.1

>prot_P-littoralis_Contig762.23.1 ID=prot_P-littoralis_Contig762.23.1|Name=mRNA_P-littoralis_Contig762.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MWIGAGCWWNLGQQGSAVWDDVYRRSTYPTEHLHCCNSTHSWALLLRSRS
SVTKGCLYGEDSGACPVTDGGPEEGCWPLHRDDDGGGNDGLLCVWIRCWV
STKCSPPRTAIVKPHFLLVVHRIPKWVRSLCS
back to top

mRNA from alignment at P-littoralis_Contig762:113098..114268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig762.23.1 ID=mRNA_P-littoralis_Contig762.23.1|Name=mRNA_P-littoralis_Contig762.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1171bp|location=Sequence derived from alignment at P-littoralis_Contig762:113098..114268- (Pylaiella littoralis U1_48)
CGCTTCGAGGTCCTCCTGCATTCGCCTCAGCCAGTCAAACTCTTGCCCCC
CCAGATACCTCGCTCCCCCCTGCAATTCTCCCAAGGTATCATGATTTGGC
ACCCGCTGTCTCTTGGGTCAACTTCACTGGGTTCAGAGCGCCAGAGCAGG
AGCTGTGGTCCTGCATCTGAAGTAGAAATTGGCAGAGGTGTTGAGTCGAC
ACTTTGAGGGACTCGAACTATACCGTGGGTGGTGCAATCGATTGTGTTAG
GATTTCGCGAAGTGTATATGTGGATCGGTGCTGGCTGCTGGTGGAACCTG
GGGCAACAAGGAAGTGCAGTGTGGGATGATGTATACAGAAGGAGTACATA
TCCGACCGAGCACTTGCACTGCTGCAACTCAACACATTCATGGGCACTGC
TGCTGAGGTCGCGCAGTAGTGTAACGAAGGGCTGTCTATACGGGGAAGAT
TCTGGTGCCTGCCCAGTTACAGACGGAGGTCCAGAGGAAGGCTGCTGGCC
GCTTCATCGCGATGACGATGGAGGTGTGTTTTGTTGTGGTGTGCTGTTTG
CAGTTTGATCTTGTCATCCGGTACCCCTCCTGCTTGTGTGCGTGTGCCGT
ACTGTGCTCGTCACCCGGGGCAGGGCAATGAATTGCCTTGCTCGATTGCT
GTGTAGATTGCACAGCGCCACGAAGGGCTATAGCGAGGATGGATTTTATT
CTACATAGACTATGTGTATAGGTGTTCGTTGTGCAGCAGGACGTGTTTGA
TAAATCTCTCCGCACCAACACATGAACATGATGATGCAATACACCTGTGT
AGTCTGTAGCACAGCAGACAGCTGTATTCACATTCTACACAGCAGTATAC
TAATGCCGTACCAGCACCCACCTGTGTATGGCCCGTACATCAGTTATCTA
CCCATATTTGTCGAAAGAAACACGCACGTGCAAATCATCGTCCTTGGTGA
TGTACGAGTACTCAGCCAAATTCGAAGAAATGAAGAAACACTGAACGAGC
GTCAATCTGTATGCTGAATGAATGTTGGCAGGTGGGAACGATGGTCTGCT
GTGTGTTTGGATCCGGTGTTGGGTGTCTACAAAGTGCTCCCCGCCGCGAA
CAGCAATCGTGAAGCCTCATTTTCTCCTGGTGGTTCATCGGATACCGAAG
TGGGTGCGATCTTTGTGTAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig762:113098..114268-

>mRNA_P-littoralis_Contig762.23.1 ID=mRNA_P-littoralis_Contig762.23.1|Name=mRNA_P-littoralis_Contig762.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig762:113098..114268- (Pylaiella littoralis U1_48)
ATGTGGATCGGTGCTGGCTGCTGGTGGAACCTGGGGCAACAAGGAAGTGC
AGTGTGGGATGATGTATACAGAAGGAGTACATATCCGACCGAGCACTTGC
ACTGCTGCAACTCAACACATTCATGGGCACTGCTGCTGAGGTCGCGCAGT
AGTGTAACGAAGGGCTGTCTATACGGGGAAGATTCTGGTGCCTGCCCAGT
TACAGACGGAGGTCCAGAGGAAGGCTGCTGGCCGCTTCATCGCGATGACG
ATGGAGGTGGGAACGATGGTCTGCTGTGTGTTTGGATCCGGTGTTGGGTG
TCTACAAAGTGCTCCCCGCCGCGAACAGCAATCGTGAAGCCTCATTTTCT
CCTGGTGGTTCATCGGATACCGAAGTGGGTGCGATCTTTGTGTAGC
back to top