mRNA_P-littoralis_Contig762.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig762.17.1
Unique NamemRNA_P-littoralis_Contig762.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig762.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig762contigP-littoralis_Contig762:94031..94637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size363
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.7368333-UTR-P-littoralis_Contig762:94030..941581680791574.7368333-UTR-P-littoralis_Contig762:94030..94158Pylaiella littoralis U1_48UTRP-littoralis_Contig762 94031..94158 -
1680791574.7731354-UTR-P-littoralis_Contig762:94621..946371680791574.7731354-UTR-P-littoralis_Contig762:94621..94637Pylaiella littoralis U1_48UTRP-littoralis_Contig762 94622..94637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.7511702-CDS-P-littoralis_Contig762:94158..941591680791574.7511702-CDS-P-littoralis_Contig762:94158..94159Pylaiella littoralis U1_48CDSP-littoralis_Contig762 94159..94159 -
1680791574.762955-CDS-P-littoralis_Contig762:94403..946211680791574.762955-CDS-P-littoralis_Contig762:94403..94621Pylaiella littoralis U1_48CDSP-littoralis_Contig762 94404..94621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig762.17.1prot_P-littoralis_Contig762.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig762 94159..94621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig762.17.1

>prot_P-littoralis_Contig762.17.1 ID=prot_P-littoralis_Contig762.17.1|Name=mRNA_P-littoralis_Contig762.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
MAMPPILRTATPSIPRTTKVSRISPKTTTTSIRRAVSLTAYFWASSRATT
RTVSTRLGPAVPTAMMPNSTNL*
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mRNA from alignment at P-littoralis_Contig762:94031..94637-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig762.17.1 ID=mRNA_P-littoralis_Contig762.17.1|Name=mRNA_P-littoralis_Contig762.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=607bp|location=Sequence derived from alignment at P-littoralis_Contig762:94031..94637- (Pylaiella littoralis U1_48)
ACCCGCAATTCCGAGGATGGCGATGCCCCCAATTCTGAGGACGGCGACGC
CCTCAATTCCGAGGACAACGAAAGTCTCCCGGATCTCGCCCAAGACGACG
ACAACTTCGATAAGGCGAGCCGTGTCATTGACGGCCTATTTTTGGGCATC
GTCGAGAGCGACAACGAGAACGGTGTCGACGCGTCTGGGTCCGGCGGTTC
CGACAGCGATGATGCCTAATTCGACCAATCTCTGGTGCGTTCCTCCCTTT
TAGTTTAGCACCCCAAAGTTTTCAGTTTTACACCCCGACGGTCGGCCTCT
TTTGGTCTTCCCGTAAGAGGCTAGTCATTTGCCGTAATACGTCTTCTGTT
TTTTTTCGTTCGTGGTTGGATCTCGTCATCGGAACTGTCAAGTTCAAGCT
ACTTATACATGGGCGTCCTCCAAACATGATTCCTTCGTCCTTCTTGTGCA
TTTTCGCAACGTATCGCCCTTGGCGCAGAGATGACGGCGGCAGGCGCAAA
TACCGGACGGAGGAGGGCGGCCAGCTTGGGGGGGTGAACGCATACGACAG
GACCTCGTGTGACATGAACTCCTGTTTGATTGGTTTTGAAATGAAGGTTT
TCTGTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig762:94031..94637-

>mRNA_P-littoralis_Contig762.17.1 ID=mRNA_P-littoralis_Contig762.17.1|Name=mRNA_P-littoralis_Contig762.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig762:94031..94637- (Pylaiella littoralis U1_48)
ATGGCGATGCCCCCAATTCTGAGGACGGCGACGCCCTCAATTCCGAGGAC
AACGAAAGTCTCCCGGATCTCGCCCAAGACGACGACAACTTCGATAAGGC
GAGCCGTGTCATTGACGGCCTATTTTTGGGCATCGTCGAGAGCGACAACG
AGAACGGTGTCGACGCGTCTGGGTCCGGCGGTTCCGACAGCGATGATGCC
TAATTCGACCAATCTCTGA
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