mRNA_P-littoralis_Contig762.12.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig762.12.2
Unique NamemRNA_P-littoralis_Contig762.12.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig762.12.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig762contigP-littoralis_Contig762:64613..65437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size494
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.6697285-UTR-P-littoralis_Contig762:64612..648511680791574.6697285-UTR-P-littoralis_Contig762:64612..64851Pylaiella littoralis U1_48UTRP-littoralis_Contig762 64613..64851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.685727-CDS-P-littoralis_Contig762:64851..650321680791574.685727-CDS-P-littoralis_Contig762:64851..65032Pylaiella littoralis U1_48CDSP-littoralis_Contig762 64852..65032 -
1680791574.700892-CDS-P-littoralis_Contig762:65363..654371680791574.700892-CDS-P-littoralis_Contig762:65363..65437Pylaiella littoralis U1_48CDSP-littoralis_Contig762 65364..65437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig762.12.2prot_P-littoralis_Contig762.12.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig762 64852..65437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig762.12.2

>prot_P-littoralis_Contig762.12.2 ID=prot_P-littoralis_Contig762.12.2|Name=mRNA_P-littoralis_Contig762.12.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
LPRLCSVLPARALHSTPSYDCHSIREELRLASTHVLLVLVSVQQLLLSTT
HVHGHEREREVRCVWKVRSRPPLRRRDCKLVLRL*
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mRNA from alignment at P-littoralis_Contig762:64613..65437-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig762.12.2 ID=mRNA_P-littoralis_Contig762.12.2|Name=mRNA_P-littoralis_Contig762.12.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=825bp|location=Sequence derived from alignment at P-littoralis_Contig762:64613..65437- (Pylaiella littoralis U1_48)
CTGCCTCGCTTGTGCTCTGTTCTACCGGCACGAGCACTGCATTCGACGCC
CAGCTACGACTGCCACAGCATAAGGTGTGTACGTAAGGTGTGCAACAGCA
GCTTTCACACCAATCGCGCCATGGGCGAGTCCAGTAGGCGAAGGCAAAGT
GTACGACGGTCCCAGCTGCTGTGACTGCTGTAGGATACAGATTCTCTTCG
AATACTCCGCACGCAAAGGCAGCTCTTATCTTGGGACGTACGAGTTTGGG
TTTGAACGGGCCATCGTTCGTCAGCTGATAACATGGCCAGCAGTTGGGTT
GGGTGTGGGGTGAGGATGAATGTCTCCTAACGCCCATAACAACACTCTGA
AATACCCTCTCCCGCTCTCTCTTTCGCTTGATTTCGCCGCATGCTCCTCC
TCCAGGGAGGAACTCCGCCTTGCTTCCACTCACGTTTTGCTTGTCCTGGT
TTCTGTTCAACAACTGCTGCTCAGCACAACGCACGTCCACGGCCATGAGC
GTGAGAGGGAGGTGAGGTGCGTGTGGAAGGTCCGATCACGGCCTCCCCTG
CGAAGACGGGACTGCAAACTTGTGCTGCGCCTGTAGGCGCCCTGGCCCCA
GCGACAACTCAACTAAGCGAGCTTGGCGACACATTGGAGCCGGAGAGTGT
TGGGACTCTCTTGTAGAATGGGAAGCTGCGACGGGCGGCACGTGGCCCCA
CCGGCGAGACTTGCTGCAAGAGCCTCTTCAGGCGAATGAGAGCATATGCT
CGCGGGTTGATTGTGTTAGTGGGCTGTACTCCAAGTTTCGGAAGCAACGT
GCTGCAGCGGCCGGGGGAAGCTCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig762:64613..65437-

>mRNA_P-littoralis_Contig762.12.2 ID=mRNA_P-littoralis_Contig762.12.2|Name=mRNA_P-littoralis_Contig762.12.2|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig762:64613..65437- (Pylaiella littoralis U1_48)
CTGCCTCGCTTGTGCTCTGTTCTACCGGCACGAGCACTGCATTCGACGCC
CAGCTACGACTGCCACAGCATAAGGGAGGAACTCCGCCTTGCTTCCACTC
ACGTTTTGCTTGTCCTGGTTTCTGTTCAACAACTGCTGCTCAGCACAACG
CACGTCCACGGCCATGAGCGTGAGAGGGAGGTGAGGTGCGTGTGGAAGGT
CCGATCACGGCCTCCCCTGCGAAGACGGGACTGCAAACTTGTGCTGCGCC
TGTAG
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