mRNA_P-littoralis_Contig762.10.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig762.10.2
Unique NamemRNA_P-littoralis_Contig762.10.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig762.10.2 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 8.730e-37
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 3 
Query:  120 TADCQQTHLDASGADFVQAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAQGGVVFKLRLSFLEPTKTRGQWLKDNPPSLTIVLPCAVHRGRKCNVPEAWFMWYTGE 440
            TAD   THLDA+  +F   +     RPDW+VTSPPY NAF+IL +AL V + GV FKLRLSFLEPTKTRG+WLKDNPPS  +VLP A + GR C+  EAWF+W+   
Sbjct:   60 TAD---THLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLAS 163
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BLAST of mRNA_P-littoralis_Contig762.10.2 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 9.520e-15
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 3 
Query:  276 GVVFKLRLSFLEPTKTRGQWLKDNPPSLTIVLPCAVHRGRKCNVPEAWFMWYT 434
            GV FKLRL+FL P K+RG+WLKDNPP   ++LP A +R R+C+  E WF+W T
Sbjct:    2 GVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
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BLAST of mRNA_P-littoralis_Contig762.10.2 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 3.000e-14
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 3 
Query:  138 THLDASGADFVQAY--GQGDNRPDWVVTSPPYKNAFAILKQALHVAQGGVVFKLRLSFLEPTKTRGQWLKDNPPSLTI 365
            T+LDAS A F   +   +   RPDWV+TSPPYK A   +K AL +A  GV  KL LSFLEP   RG WL+ NPP++ +
Sbjct:  142 TNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219
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BLAST of mRNA_P-littoralis_Contig762.10.2 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR)

HSP 1 Score: 67.0 bits (162), Expect = 3.480e-10
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 3 
Query:  135 QTHLDASGADFVQAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAQGGVVFKLRLSFLEPTKTRGQWLKDNPPSLTIVL------PCAVHRGRKCNVPEAWFMW-----YTGEKAHCP 455
            QT  DA+   F   Y +   R +WV+T+PP+  A AIL  A   A  GV F LRLS+LEPTK RG W  ++  +++ ++      P      R  +V  AW +W     +  +  HCP
Sbjct:   74 QTTTDATERLFWH-YWKNRLRFEWVITNPPFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVWRKDWSWKAKGCHCP 190
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BLAST of mRNA_P-littoralis_Contig762.10.2 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.750e-8
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = -1 
Query:  194 FNHCPRVLVGSRNDSLSLKTTPPWATCSACFRMAKAFLYGGLVTTQSGR 340
             +HCP VLVGSR  SLSL  TP      A F++AKA LYGGLVTT SGR
Sbjct:  171 LSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGR 219
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BLAST of mRNA_P-littoralis_Contig762.10.2 vs. uniprot
Match: A0A197BS01_9SPHN (Methyltransferase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A197BS01_9SPHN)

HSP 1 Score: 52.8 bits (125), Expect = 5.720e-5
Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = 3 
Query:  192 NRPDWVVTSPPYKNAFAILKQALHVAQGGVVFKLRLSFLEPTKTRGQWLKDNPPSLT--IVLPCAVHRGR-----KCNVPEAWFMWYTGEKAHCPIA 461
            +RPDW+VT+PP++     +++AL +A+ GV   +R  F+E      +  KD PPS     V    + RGR            W +W  G  A   +A
Sbjct:  100 DRPDWIVTNPPFRLGEEFVRRALQLARSGVAMLVRTGFIEGAGRYERLFKDRPPSCVAQFVERVPILRGRVDPRASTATGYCWLIWQAGVAAPTRLA 196
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BLAST of mRNA_P-littoralis_Contig762.10.2 vs. uniprot
Match: A0A2W4YX34_9CYAN (Uncharacterized protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4YX34_9CYAN)

HSP 1 Score: 52.0 bits (123), Expect = 9.510e-5
Identity = 32/90 (35.56%), Postives = 44/90 (48.89%), Query Frame = 3 
Query:  186 GDNRPDWVVTSPPYKNAFAILKQALHVAQGGVVFKLRLSFLEPTKTRGQWLKDNPPSLTIVL-----PCAVHRGRKCN-VPEAWFMWYTG 437
            G +  DW VT+PP+  A  IL  A   ++ G  F LRLS+LEPT  R  WL +    L  ++     P      +K + V  AW +W  G
Sbjct:  103 GGSPIDWTVTNPPFCEAEQILPLAWEYSRQGCAFLLRLSYLEPTAGRADWLNEMADHLRYLITLNPRPKFRRDTKKTDSVTAAWLVWEKG 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig762.10.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE8.730e-3759.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE9.520e-1558.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI3.000e-1451.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A433N1N0_CHLFR3.480e-1035.59Uncharacterized protein n=1 Tax=Chlorogloeopsis fr... [more]
A0A6H5L6X2_9PHAE8.750e-863.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A197BS01_9SPHN5.720e-530.93Methyltransferase n=3 Tax=Proteobacteria TaxID=122... [more]
A0A2W4YX34_9CYAN9.510e-535.56Uncharacterized protein n=1 Tax=Phormidesmis pries... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig762contigP-littoralis_Contig762:63029..64056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
PFAMsCTP_transf_like,Glyco_trans_1_4,Glycos_transf_2,Methyltransf_11,Methyltransf_12,Methyltransf_23,RrnaAD
Model size610
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons2
Evalue2.28e-11
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria
EC2.1.1.182
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
Cds size489
COG categoryJ
CAZyGT2,GT4
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791575.0263479-UTR-P-littoralis_Contig762:63028..630811680791575.0263479-UTR-P-littoralis_Contig762:63028..63081Pylaiella littoralis U1_48UTRP-littoralis_Contig762 63029..63081 -
1680791575.0607572-UTR-P-littoralis_Contig762:63988..640561680791575.0607572-UTR-P-littoralis_Contig762:63988..64056Pylaiella littoralis U1_48UTRP-littoralis_Contig762 63989..64056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791575.038552-CDS-P-littoralis_Contig762:63081..635121680791575.038552-CDS-P-littoralis_Contig762:63081..63512Pylaiella littoralis U1_48CDSP-littoralis_Contig762 63082..63512 -
1680791575.049412-CDS-P-littoralis_Contig762:63930..639881680791575.049412-CDS-P-littoralis_Contig762:63930..63988Pylaiella littoralis U1_48CDSP-littoralis_Contig762 63931..63988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig762.10.2prot_P-littoralis_Contig762.10.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig762 63082..63988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig762.10.2

>prot_P-littoralis_Contig762.10.2 ID=prot_P-littoralis_Contig762.10.2|Name=mRNA_P-littoralis_Contig762.10.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
MPCVGLKEAFVFRRTTSTADCQQTHLDASGADFVQAYGQGDNRPDWVVTS
PPYKNAFAILKQALHVAQGGVVFKLRLSFLEPTKTRGQWLKDNPPSLTIV
LPCAVHRGRKCNVPEAWFMWYTGEKAHCPIAQHWLIHLLLGWSFPRSLRP
QQQWSSPIRRSS*
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mRNA from alignment at P-littoralis_Contig762:63029..64056-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig762.10.2 ID=mRNA_P-littoralis_Contig762.10.2|Name=mRNA_P-littoralis_Contig762.10.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1028bp|location=Sequence derived from alignment at P-littoralis_Contig762:63029..64056- (Pylaiella littoralis U1_48)
GGTGAACGACATGATGGCCCACTTGGACGTCGGTGGTCTTGTTCTTGACT
GCTGCGGGAGCACGAGAGATGCCGTGTGTCGGCTTGAAAGAGGCTTTCGT
GTTCAGACGGACGACATCAACAGCAGGCAAGCGAGACAGACAAATTGCAT
GTACTAAATACGTTCAACGGCAGTGCAAACCAATTATCCAATGCCGCTCT
CTCGTCCACGTGCTCCACGTAATGGTGTCATATATCGCAAGGGCGGGATG
ATAAAAATAGGCGAAATAAGTATTTTGCCTCCTGAAGAATAACACTGCTT
TTCCTCAACGTTGGCGATTCTGGATTTTGGCTAGGCGACCCAAAATGCCC
TGATGTTTGAGCCGACAAATCTCGGAAGAAAGCTTTTCAGGTCATCGCCT
GCGGAGGCTAAGCCTTTCTGAAAGGGGTGGTGATCATGGTGTACACGATA
CCAAATTCGCCACAGGCTCACAAATATTCGCATACACGATCCACGTTCGT
TCTGTCACCTACGCGTGCATGCCTGTTTTGTTCCCGCACGACAGACTGCC
AGCAGACACACCTCGATGCCTCGGGTGCAGATTTTGTGCAGGCGTACGGG
CAGGGAGATAATCGGCCCGACTGGGTCGTCACGAGCCCTCCATACAAAAA
TGCCTTCGCCATCCTGAAGCAGGCACTGCATGTAGCCCAAGGCGGCGTTG
TTTTCAAGCTCAGGCTGTCGTTCCTCGAGCCTACTAAAACTCGCGGACAG
TGGTTGAAAGACAACCCACCTTCTCTCACGATAGTTCTGCCCTGCGCAGT
TCACCGGGGTAGGAAATGTAATGTCCCGGAGGCATGGTTCATGTGGTACA
CTGGTGAAAAGGCTCATTGTCCTATTGCACAGCATTGGCTGATTCACCTC
CTCCTGGGCTGGAGTTTTCCACGTAGCTTGCGGCCGCAGCAGCAGTGGTC
TTCACCGATCCGCCGTTCTTCCTGAAGAACAGCCAGCATGCGTTGCAGAT
GTCGCTCTCCATGGAAAGCTCTCCCCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig762:63029..64056-

>mRNA_P-littoralis_Contig762.10.2 ID=mRNA_P-littoralis_Contig762.10.2|Name=mRNA_P-littoralis_Contig762.10.2|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig762:63029..64056- (Pylaiella littoralis U1_48)
ATGCCGTGTGTCGGCTTGAAAGAGGCTTTCGTGTTCAGACGGACGACATC
AACAGCAGACTGCCAGCAGACACACCTCGATGCCTCGGGTGCAGATTTTG
TGCAGGCGTACGGGCAGGGAGATAATCGGCCCGACTGGGTCGTCACGAGC
CCTCCATACAAAAATGCCTTCGCCATCCTGAAGCAGGCACTGCATGTAGC
CCAAGGCGGCGTTGTTTTCAAGCTCAGGCTGTCGTTCCTCGAGCCTACTA
AAACTCGCGGACAGTGGTTGAAAGACAACCCACCTTCTCTCACGATAGTT
CTGCCCTGCGCAGTTCACCGGGGTAGGAAATGTAATGTCCCGGAGGCATG
GTTCATGTGGTACACTGGTGAAAAGGCTCATTGTCCTATTGCACAGCATT
GGCTGATTCACCTCCTCCTGGGCTGGAGTTTTCCACGTAGCTTGCGGCCG
CAGCAGCAGTGGTCTTCACCGATCCGCCGTTCTTCCTGA
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