mRNA_P-littoralis_Contig761.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig761.35.1
Unique NamemRNA_P-littoralis_Contig761.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A6H5JAJ7_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ7_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.610e-26
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 2
Query:    2 SDGGEYEAVDNPGVYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNIC 205
            SDG EY+AV   GVY LATDLALVWDPEFKAQT+ YA++N+ FLKEF  AWT +MNADR+DGP+ N+C
Sbjct:  426 SDGQEYQAVGKSGVYVLATDLALVWDPEFKAQTVMYAEDNDQFLKEFASAWTAVMNADRYDGPTGNVC 493          
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A6H5JXZ4_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ4_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.710e-25
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2
Query:    2 SDGGEYEAVDNPGVYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNIC 205
            S+G E++AV   G+Y LATDLALVWDPEFKAQT+ YA++NE FLK+F  AWT +MNADRFDGP+ N+C
Sbjct:  631 SNGQEFQAVGRSGIYVLATDLALVWDPEFKAQTVMYAEDNEQFLKDFASAWTAVMNADRFDGPTGNVC 698          
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A6H5JP97_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP97_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 5.510e-24
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 2
Query:    5 DGGEYEAVDNPGVYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNIC 205
            DG EY+AV   GVY L TDLALVWDPEFKAQ++ YAQ+N+ F  EFG AWT LMNADRFDGP+ ++C
Sbjct:  370 DGKEYQAVGKSGVYVLDTDLALVWDPEFKAQSILYAQDNDYFRHEFGSAWTALMNADRFDGPTGSMC 436          
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A6H5K5Q0_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.160e-21
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 2
Query:   14 EYEAVDNPGVYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNIC 205
            EY+AV   GVYALATDLALVWDPE KAQT+ YA++N+ FLKEF  AWT +M ADR DGP+ ++C
Sbjct: 1240 EYQAVGTQGVYALATDLALVWDPELKAQTVVYAEDNDEFLKEFASAWTAVMIADRCDGPTGDVC 1303          
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A6H5K428_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K428_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.460e-18
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    5 DGGEYEAVDNPGVYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFD 184
            DG EY+AV   GVY LATDLALVWD EFKAQ++  AQ+N+ FL+ FG AWT  MNADRFD
Sbjct:  471 DGTEYQAVGKSGVYVLATDLALVWDAEFKAQSILCAQDNDYFLEHFGSAWTAWMNADRFD 530          
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A7S3ZIM4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZIM4_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 1.290e-15
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 2
Query:   14 EYEAVDNPGVYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNIC 205
            +Y+AV    +Y L TDL + WDPE       +A +N+LFL EF  AWT LMNADRFDGP +N+C
Sbjct:   33 QYKAVGKD-LYMLQTDLVIRWDPEMLTAAQDFASDNQLFLAEFRAAWTRLMNADRFDGPFKNLC 95          
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A835VTC5_CHLIN (PEROXIDASE_4 domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VTC5_CHLIN)

HSP 1 Score: 78.6 bits (192), Expect = 6.890e-15
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 2
Query:   14 EYEAVDNPGVYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNIC 205
            E+ A    G++   TDLA+ WDPE  A   ++A +N+ FL+ F  AWT LMNADRFDGP RN+C
Sbjct:  614 EFAAAGGKGLFMTPTDLAIKWDPEMLAIAQEFAADNKAFLQTFAGAWTRLMNADRFDGPDRNLC 677          
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A6B2KZL8_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KZL8_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 7.790e-11
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 2
Query:   14 EYEAVDNPGVYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNIC 205
            EY+AV    +Y L  DLA+ WD  F A    +A +  +F++EF  AW  +MNADRFDGP+ N+C
Sbjct:  575 EYQAVGKE-LYMLPMDLAIRWDDTFLAIAQDFASDQSMFVREFLSAWVKMMNADRFDGPTGNLC 637          
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A7S4BLV4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BLV4_CHRCT)

HSP 1 Score: 64.3 bits (155), Expect = 6.860e-10
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 2
Query:   41 VYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNICHRG 214
            +Y L TDLAL++D E  A    +A + E F   F  AW  +MNADRFDGP+ N+C RG
Sbjct:  537 LYRLKTDLALLYDAELAAIATDFAADIEAFRDAFAAAWAKIMNADRFDGPTGNLCDRG 594          
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Match: A0A7S4BLV5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BLV5_CHRCT)

HSP 1 Score: 64.3 bits (155), Expect = 6.960e-10
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 2
Query:   41 VYALATDLALVWDPEFKAQTMKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNICHRG 214
            +Y L TDLAL++D E  A    +A + E F   F  AW  +MNADRFDGP+ N+C RG
Sbjct:  655 LYRLKTDLALLYDAELAAIATDFAADIEAFRDAFAAAWAKIMNADRFDGPTGNLCDRG 712          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig761.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JAJ7_9PHAE2.610e-2670.59KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JXZ4_9PHAE3.710e-2567.65KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JP97_9PHAE5.510e-2468.66KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K5Q0_9PHAE3.160e-2167.19KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K428_9PHAE1.460e-1868.33KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S3ZIM4_9EUKA1.290e-1553.13Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A835VTC5_CHLIN6.890e-1551.56PEROXIDASE_4 domain-containing protein n=1 Tax=Chl... [more]
A0A6B2KZL8_9EUKA7.790e-1146.88Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S4BLV4_CHRCT6.860e-1050.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4BLV5_CHRCT6.960e-1050.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig761contigP-littoralis_Contig761:122348..122647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3055.EDP09466
PFAMsperoxidase
Model size300
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.54e-07
EggNOG OGsCOG0685@1|root,2QTDY@2759|Eukaryota,37ZNC@33090|Viridiplantae
Ec32 ortholog descriptionCatalase decomposes hydrogen peroxide to molecular oxygen and water
Ec32 orthologEc-00_008220.1
DescriptionPeroxidase
Cds size129
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.4483173-UTR-P-littoralis_Contig761:122347..1224181680791574.4483173-UTR-P-littoralis_Contig761:122347..122418Pylaiella littoralis U1_48UTRP-littoralis_Contig761 122348..122418 -
1680791574.4773505-UTR-P-littoralis_Contig761:122547..1226471680791574.4773505-UTR-P-littoralis_Contig761:122547..122647Pylaiella littoralis U1_48UTRP-littoralis_Contig761 122548..122647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791574.462678-CDS-P-littoralis_Contig761:122418..1225471680791574.462678-CDS-P-littoralis_Contig761:122418..122547Pylaiella littoralis U1_48CDSP-littoralis_Contig761 122419..122547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig761.35.1prot_P-littoralis_Contig761.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig761 122419..122547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig761.35.1

>prot_P-littoralis_Contig761.35.1 ID=prot_P-littoralis_Contig761.35.1|Name=mRNA_P-littoralis_Contig761.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=43bp
MKYAQNNELFLKEFGDAWTTLMNADRFDGPSRNICHRGRRLS*
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mRNA from alignment at P-littoralis_Contig761:122348..122647-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig761.35.1 ID=mRNA_P-littoralis_Contig761.35.1|Name=mRNA_P-littoralis_Contig761.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig761:122348..122647- (Pylaiella littoralis U1_48)
CTCTGATGGTGGAGAGTACGAGGCTGTCGACAACCCGGGAGTCTATGCTC TCGCCACCGACCTCGCCCTCGTCTGGGACCCCGAATTCAAGGCGCAAACC ATGAAGTATGCGCAGAACAACGAACTGTTCCTCAAGGAGTTCGGGGATGC TTGGACCACTCTCATGAACGCTGACCGCTTCGACGGCCCTAGCCGCAACA TCTGTCACCGAGGACGGCGTCTTTCATGAGGCCTTGCTGGTCACAGCAGC CAGCCAGTCGCGCCAACACCCATTCGTTCCTAGCGAAAACAACCAGTAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig761:122348..122647-

>mRNA_P-littoralis_Contig761.35.1 ID=mRNA_P-littoralis_Contig761.35.1|Name=mRNA_P-littoralis_Contig761.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=129bp|location=Sequence derived from alignment at P-littoralis_Contig761:122348..122647- (Pylaiella littoralis U1_48)
ATGAAGTATGCGCAGAACAACGAACTGTTCCTCAAGGAGTTCGGGGATGC
TTGGACCACTCTCATGAACGCTGACCGCTTCGACGGCCCTAGCCGCAACA
TCTGTCACCGAGGACGGCGTCTTTCATGA
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