mRNA_P-littoralis_Contig761.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig761.33.1
Unique NamemRNA_P-littoralis_Contig761.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig761.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig761contigP-littoralis_Contig761:104659..105932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size391
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791573.573696-UTR-P-littoralis_Contig761:104658..1047271680791573.573696-UTR-P-littoralis_Contig761:104658..104727Pylaiella littoralis U1_48UTRP-littoralis_Contig761 104659..104727 -
1680791573.6182559-UTR-P-littoralis_Contig761:105877..1059321680791573.6182559-UTR-P-littoralis_Contig761:105877..105932Pylaiella littoralis U1_48UTRP-littoralis_Contig761 105878..105932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791573.585535-CDS-P-littoralis_Contig761:104727..1049861680791573.585535-CDS-P-littoralis_Contig761:104727..104986Pylaiella littoralis U1_48CDSP-littoralis_Contig761 104728..104986 -
1680791573.6038725-CDS-P-littoralis_Contig761:105869..1058771680791573.6038725-CDS-P-littoralis_Contig761:105869..105877Pylaiella littoralis U1_48CDSP-littoralis_Contig761 105870..105877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig761.33.1prot_P-littoralis_Contig761.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig761 104728..105877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig761.33.1

>prot_P-littoralis_Contig761.33.1 ID=prot_P-littoralis_Contig761.33.1|Name=mRNA_P-littoralis_Contig761.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MKWCGLQSVQRLIRGINGEEDKGATEISLAAQVGRGAGFRVRRIGPCREM
AYKTQVAFPKESLYWTDRHRRTSPKVTAASGSYFPATW*
back to top

mRNA from alignment at P-littoralis_Contig761:104659..105932-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig761.33.1 ID=mRNA_P-littoralis_Contig761.33.1|Name=mRNA_P-littoralis_Contig761.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1274bp|location=Sequence derived from alignment at P-littoralis_Contig761:104659..105932- (Pylaiella littoralis U1_48)
GGACGAGCCTCGAGAGGAAGCAGAGGGGCGCGAGTCTGATTCGGAGGTTC
CCCCGATGAAATGGTTGGTGTGAGGAAGGTTGTTCTCCTGCACAAACTTT
TCACCCGTTCAGCATCGTGTTTTTGCTCAGCCTGCCGTGTTCGTCATTAC
GATGAGTGCTACATCAATGCGACGTACCCGCGCCTTGTTCCAACGTTGAA
AGAAGGAACAGTGGAGGAAAGGGTTGTCATGGATACTGGGGTGGATCCGA
AGACCGTTGACCCGGATACGGGGTTGTACAACGGCAAAAAAACGGCCAAA
ATCGAGTTCGATGGTAGACAGAAAGTCTCGGTCATGAAAAGAGTTGCTGG
TACGCAGTTCGAGGAGGGCCACTGCAGTAGTGCTTAGAGGGAGGGAGCGA
GAGGCGAGCGATCTTATCTGGTTCAACTGTGTGTTTTTTTGCGTGCGGTC
GTAACGCTCGTACGTGCAGGCTTGTAATATTTTGTAAATGTGATGATTTT
TATGGACGCCGGTCATGAAACTAAACCGCCAAGTATCAATCATATGTATG
CCGCTGTAACTCCACATCTTTTTTTATTTGGGAAGTTCTGATGGCATATT
CGTGATCACCGCCCAAAAATGACCCTATCCTGAAAATTTCATGTCGTTCG
GCGAACGTTTGAAATCCGGGGATTTTTTGTAACCATCCCCTGGTGCTGCA
TGTTTGCATATTTCTTTACCGAGAGGAATAAAACGCTTTGAAACCCGGGT
GTTACACATCACATTAAATTTTTCAACACCTTGAAGCATCATCATTATGA
CATGGGCGGTATAGTAAGCAAAAAAAAAGCTTAACTAGGGGGGGGATGAT
AACTTACCGCCCCCCCCCCCAAAAAAATATGTCTTTAGCGCGGAACCCGC
CAGTGGATGGAAAATACGTTGCTCGCCGCAATGCCGGTCCCGTCAGGTGT
GGGCTCCAGTCGGTGCAGAGGCTCATCAGAGGCATCAATGGCGAAGAAGA
CAAAGGGGCAACGGAAATATCTCTAGCAGCTCAAGTCGGCCGAGGAGCGG
GTTTTCGTGTTCGGCGAATTGGACCTTGTCGTGAAATGGCCTACAAGACG
CAGGTAGCATTCCCGAAAGAATCCCTTTACTGGACTGACCGACATCGACG
AACATCTCCGAAGGTTACAGCTGCTTCCGGCTCATATTTCCCAGCTACCT
GGTAGAGCTTACACGGGAAAAAATGCATCTTCCACGGATAAAACGTCGAG
AGGCCGTGGATGCGAGGTGCGGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig761:104659..105932-

>mRNA_P-littoralis_Contig761.33.1 ID=mRNA_P-littoralis_Contig761.33.1|Name=mRNA_P-littoralis_Contig761.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig761:104659..105932- (Pylaiella littoralis U1_48)
ATGAAATGGTGTGGGCTCCAGTCGGTGCAGAGGCTCATCAGAGGCATCAA
TGGCGAAGAAGACAAAGGGGCAACGGAAATATCTCTAGCAGCTCAAGTCG
GCCGAGGAGCGGGTTTTCGTGTTCGGCGAATTGGACCTTGTCGTGAAATG
GCCTACAAGACGCAGGTAGCATTCCCGAAAGAATCCCTTTACTGGACTGA
CCGACATCGACGAACATCTCCGAAGGTTACAGCTGCTTCCGGCTCATATT
TCCCAGCTACCTGGTAG
back to top