mRNA_P-littoralis_Contig760.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig760.7.1
Unique NamemRNA_P-littoralis_Contig760.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig760.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig760contigP-littoralis_Contig760:8410..9063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size505
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791572.9112484-UTR-P-littoralis_Contig760:8409..84371680791572.9112484-UTR-P-littoralis_Contig760:8409..8437Pylaiella littoralis U1_48UTRP-littoralis_Contig760 8410..8437 +
1680791572.951387-UTR-P-littoralis_Contig760:8928..90631680791572.951387-UTR-P-littoralis_Contig760:8928..9063Pylaiella littoralis U1_48UTRP-littoralis_Contig760 8929..9063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791572.9249644-CDS-P-littoralis_Contig760:8437..85921680791572.9249644-CDS-P-littoralis_Contig760:8437..8592Pylaiella littoralis U1_48CDSP-littoralis_Contig760 8438..8592 +
1680791572.934769-CDS-P-littoralis_Contig760:8741..89281680791572.934769-CDS-P-littoralis_Contig760:8741..8928Pylaiella littoralis U1_48CDSP-littoralis_Contig760 8742..8928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig760.7.1prot_P-littoralis_Contig760.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig760 8438..8928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig760.7.1

>prot_P-littoralis_Contig760.7.1 ID=prot_P-littoralis_Contig760.7.1|Name=mRNA_P-littoralis_Contig760.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MVEAHGDHLRWGTQVGKGTRYCSERICIATKNDAQLAPTVVGPAPNCTIP
KEGLWAVEMCFVQFFSDHSCEILQPTFDTSQPFGKAKSLETHSIERHGTT
TDLRAVHGNGALL*
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mRNA from alignment at P-littoralis_Contig760:8410..9063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig760.7.1 ID=mRNA_P-littoralis_Contig760.7.1|Name=mRNA_P-littoralis_Contig760.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig760:8410..9063+ (Pylaiella littoralis U1_48)
CAGTAAGGAACGAGATGCGTAGCTCCGTATGGTGGAAGCCCATGGTGACC
ACTTGCGTTGGGGGACGCAAGTGGGGAAAGGGACGAGGTATTGCAGCGAA
CGAATATGCATAGCAACTAAAAACGATGCCCAGCTTGCGCCCACAGTGGT
TGGACCTGCGCCAAACTGCACAATACCAAAGGAAAAGGTCAACGTGTGCA
TCTTTCAACTAATCCTGGGGGCGAAAATAATCGTACGAAGTAGTTTGACG
GGTTCTGTGTGCTGCGTAAGTGGACGGGATTTTCTTTGTTCTCCACGGTC
CACTACGGCATGATTTATTCCCCGATACTCCGGGGTCTGTGGGCAGTTGA
GATGTGCTTTGTACAATTTTTCAGCGATCATTCCTGCGAGATTTTGCAGC
CGACTTTCGATACAAGTCAACCCTTCGGAAAAGCAAAGTCACTTGAGACC
CACTCGATAGAGAGGCACGGGACCACAACCGACCTTCGAGCAGTGCACGG
AAATGGTGCTCTACTGTAGTCCGCGTCGTTTATCCATGACCGCCGCAGAG
TAGAGTTCGGACAAATTGGGACATTGCTTTCAACGTAAGTAGCACCGTCG
ACGAGACAGGCGGAGGTCTGACATGTTGTGGACGAGAGTACCCGTGTGGG
AATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig760:8410..9063+

>mRNA_P-littoralis_Contig760.7.1 ID=mRNA_P-littoralis_Contig760.7.1|Name=mRNA_P-littoralis_Contig760.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig760:8410..9063+ (Pylaiella littoralis U1_48)
ATGGTGGAAGCCCATGGTGACCACTTGCGTTGGGGGACGCAAGTGGGGAA
AGGGACGAGGTATTGCAGCGAACGAATATGCATAGCAACTAAAAACGATG
CCCAGCTTGCGCCCACAGTGGTTGGACCTGCGCCAAACTGCACAATACCA
AAGGAGGGTCTGTGGGCAGTTGAGATGTGCTTTGTACAATTTTTCAGCGA
TCATTCCTGCGAGATTTTGCAGCCGACTTTCGATACAAGTCAACCCTTCG
GAAAAGCAAAGTCACTTGAGACCCACTCGATAGAGAGGCACGGGACCACA
ACCGACCTTCGAGCAGTGCACGGAAATGGTGCTCTACTGTAG
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