mRNA_P-littoralis_Contig760.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig760.50.1
Unique NamemRNA_P-littoralis_Contig760.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: D8LB55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB55_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 2.450e-77
Identity = 120/133 (90.23%), Postives = 127/133 (95.49%), Query Frame = 1
Query:   16 MPPSSRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPTETVLE 414
            MPPSSRPLDGLVWPLVPNSKK GDRSTTWANKQALAAAIGAVDPALA+RVL ER WRQKYTKYVYKHVE+CLQ+KEAAVASSKAGLEWVHNNFEFVR+GKSMKLA AMSSITGSFET  +KG+KPKPTETVL+
Sbjct:    1 MPPSSRPLDGLVWPLVPNSKKAGDRSTTWANKQALAAAIGAVDPALAQRVLDERNWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHNNFEFVREGKSMKLAAAMSSITGSFETAVIKGTKPKPTETVLQ 133          
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A835Z6A9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.140e-41
Identity = 70/126 (55.56%), Postives = 95/126 (75.40%), Query Frame = 1
Query:   19 PPSSRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKP 396
            PP  RP  G+ WPLVPNSKKEGDRSTT+ANK AL AA GA+ P  A  +  ER WR+ Y KY+ +HV +CL+ K+ AV +++AGL+WVH+NFEF++DGK+M L+ AM++I  +F+T  + GS P+P
Sbjct:    3 PPPRRPPAGIQWPLVPNSKKEGDRSTTYANKAALKAASGAIRPEEAAAIDAERNWRKNYGKYLLRHVSACLEVKDGAVTAAEAGLQWVHDNFEFIKDGKTMPLSTAMATIKSTFKTATVTGSVPRP 128          
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A0L0G802_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G802_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 3.280e-29
Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   40 DGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPTE 402
            +G+V+P       EG RST  A + A AAAIGA+D    E+ L E+ WR+ YTK+V K VE  + + +AAV  ++AGLE +H+ F+FVRDG +M +++AM+SI+ SFETG +KGSKP   E
Sbjct:   10 EGIVFP----EDGEGGRSTQIAGRAAYAAAIGAIDKIAGEKTLKEKSWRKGYTKHVTKFVELSVVDAKAAVIGAEAGLEHMHDQFQFVRDGTAMSISKAMTSISTSFETGIVKGSKPMGKE 126          
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A7S2ABF6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2ABF6_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 8.690e-29
Identity = 53/119 (44.54%), Postives = 84/119 (70.59%), Query Frame = 1
Query:   43 GLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPT 399
            G+ +P+   +K+ GDR+TT   K+  AAA+  V+   A+ + GE+ WR +Y KYV ++VE  LQ+ E A++ ++ GL+W++ NFEFVRDG++M L EA+ +I GSF TG+++G+  KPT
Sbjct:    8 GVQFPVT--NKETGDRNTTPTQKKLWAAAVQEVNQQAAKAIAGEKSWRHRYNKYVIQNVELSLQSPENALSIARNGLDWIYENFEFVRDGETMNLNEALENIKGSFYTGFVQGTVKKPT 124          
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A139AEM4_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AEM4_GONPJ)

HSP 1 Score: 117 bits (293), Expect = 3.950e-28
Identity = 58/122 (47.54%), Postives = 85/122 (69.67%), Query Frame = 1
Query:   34 PLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGS-FETGYLKGSKPKP 396
            P DGLV+P  P+ K+ G+R +T+ NK A AAAIGA+ PA AE++  E+ WR  YTKY+ K VE   ++ + A+A +K GL++ +NNFEFVR+GK   L +A+ + T   F+TG++KG+  KP
Sbjct:    9 PEDGLVFP--PDPKRPGERGSTFGNKGAWAAAIGAISPADAEKIQKEKDWRNNYTKYIIKQVEESARSPQKAIAVAKGGLDYCYNNFEFVREGKVSTLQQALDTYTTPIFKTGFIKGTGEKP 128          
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A7S3V160_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V160_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.450e-25
Identity = 55/123 (44.72%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   28 SRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKP 396
            +RP DGLVWP+   ++  G+RST+  NK    A++  VD +LA+ +   R WR  Y KYV K++  CL+++  A+A +K GL      F FVRDGK+  L +AM+SITG+F TG++KG+  KP
Sbjct:  209 ARPADGLVWPVT--NEATGERSTSVTNKAIWEASVRGVDNSLADSIKKTRSWRFGYVKYVEKNLRCCLKSEANALAVAKQGLSAAKEKFLFVRDGKTQSLKDAMNSITGTFHTGFVKGTGSKP 329          
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A7S3W6Z5_9SPIT (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3W6Z5_9SPIT)

HSP 1 Score: 108 bits (270), Expect = 8.720e-25
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   34 PLDGLVWPLVPNSKKEGD--RSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPTETVLE 414
            P+DGL WP V    +EG   RST    K+ LA A+ AVD + A  V  E+ WR KY ++  K VE    + EAA+  + AGL+++++ FEF+RDGK+  L +A++   GSF TG++KG+KPKP +  LE
Sbjct:   10 PIDGLSWP-VTGVDEEGKQARSTQTTGKEILAVALEAVDASAAAAVRSEKGWRFKYRRHFVKSVEVSASSPEAALKVAAAGLDYMYDKFEFIRDGKTYVLRDALAQFKGSFATGFIKGNKPKPNKFELE 137          
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: W7TMF0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.040e-21
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   46 LVW---PLVPNSKKEGDRS--------TTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGS--FETGYLKGSKPKP 396
            L+W   P VP  +K    S        +T+ NK A AAA+GAVD A   ++  E+QWRQKY KY+ + V+  L++ + AV+ ++ GLE+ + NFEF+RDGK+ KL EAM    GS  +ETG +KG    P
Sbjct:   35 LIWGNQPRVPRDQKLASYSLRIKRAAGSTFGNKGAWAAAVGAVDKAEGLKIEKEKQWRQKYAKYIVRQVQVGLKSPKNAVSVAQGGLEYCYQNFEFIRDGKTYKLGEAMEKFGGSHSYETGVIKGEGKLP 164          
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A0L0GFC7_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GFC7_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 8.150e-21
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   58 LVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPTETVLE 414
            L P  +K G RST  A ++A AAAIGA++         E+ WR  Y K+V + VE  L++ E AV  ++AGL++VH++FEF R  K M ++EAMSSI  SFETGY+KG K     T  E
Sbjct:   16 LFPKDRK-GGRSTQDAGREAYAAAIGAMEIRDGANCTAEKGWRYGYAKHVMQFVELSLKSPEHAVKGAQAGLDFVHDHFEFKRGDKIMSISEAMSSIKDSFETGYIKGEKGGEKVTEFE 133          
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A7S1IIG4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IIG4_9EUGL)

HSP 1 Score: 89.4 bits (220), Expect = 6.770e-20
Identity = 48/121 (39.67%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   28 SRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGS-FETGYLKGSK 387
            S  ++G+ +P   N  K   RSTT A K A AAA+ A+D  LA+++ GE+ WR KY  ++ +   + L++ ++A+  ++AGL+ +HN FEFVRDG+S+ L +AM ++T   F  G +KG +
Sbjct:    5 STQMEGIAFP---NDGK--GRSTTIAGKNAWAAAVEAIDANLAKQIQGEKDWRHKYPSHLMQVTTAMLRSPQSALGIARAGLQHMHNAFEFVRDGRSLPLTKAMETLTEPLFTAGIIKGEQ 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB55_ECTSI2.450e-7790.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z6A9_9STRA2.140e-4155.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L0G802_9EUKA3.280e-2948.76Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S2ABF6_9EUKA8.690e-2944.54Hypothetical protein (Fragment) n=1 Tax=Stereomyxa... [more]
A0A139AEM4_GONPJ3.950e-2847.54Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A7S3V160_9STRA3.450e-2544.72Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7S3W6Z5_9SPIT8.720e-2544.19Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
W7TMF0_9STRA1.040e-2143.08Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0L0GFC7_9EUKA8.150e-2146.22Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S1IIG4_9EUGL6.770e-2039.67Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig760contigP-littoralis_Contig760:134719..135132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LB55
Model size414
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.65e-78
EggNOG OGs2A24T@1|root,2RY25@2759|Eukaryota
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791573.522301-CDS-P-littoralis_Contig760:134718..1351171680791573.522301-CDS-P-littoralis_Contig760:134718..135117Pylaiella littoralis U1_48CDSP-littoralis_Contig760 134719..135117 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791573.5382545-UTR-P-littoralis_Contig760:135117..1351321680791573.5382545-UTR-P-littoralis_Contig760:135117..135132Pylaiella littoralis U1_48UTRP-littoralis_Contig760 135118..135132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig760.50.1prot_P-littoralis_Contig760.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig760 134719..135117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig760.50.1

>prot_P-littoralis_Contig760.50.1 ID=prot_P-littoralis_Contig760.50.1|Name=mRNA_P-littoralis_Contig760.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MPPSSRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERV
LGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGK
SMKLAEAMSSITGSFETGYLKGSKPKPTETVLE
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mRNA from alignment at P-littoralis_Contig760:134719..135132-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig760.50.1 ID=mRNA_P-littoralis_Contig760.50.1|Name=mRNA_P-littoralis_Contig760.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig760:134719..135132- (Pylaiella littoralis U1_48)
AGGGAGGCAATAATCATGCCGCCGTCATCGCGCCCGCTGGACGGCCTGGT GTGGCCGCTCGTGCCGAACTCCAAGAAGGAAGGGGACAGGAGCACCACGT GGGCGAACAAGCAGGCCTTGGCAGCAGCGATCGGGGCCGTGGACCCCGCC CTTGCCGAGAGGGTCCTTGGCGAACGCCAGTGGCGGCAGAAGTACACCAA GTACGTCTACAAGCACGTGGAGTCCTGCCTGCAGAACAAGGAGGCGGCTG TGGCCAGCAGCAAGGCTGGGCTGGAGTGGGTGCACAACAACTTCGAGTTC GTGCGGGATGGCAAGAGCATGAAGCTTGCCGAGGCCATGTCGAGCATCAC CGGGTCGTTCGAGACCGGCTACTTGAAGGGGAGCAAGCCGAAGCCCACGG AGACGGTGTTGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig760:134719..135132-

>mRNA_P-littoralis_Contig760.50.1 ID=mRNA_P-littoralis_Contig760.50.1|Name=mRNA_P-littoralis_Contig760.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig760:134719..135132- (Pylaiella littoralis U1_48)
ATGCCGCCGTCATCGCGCCCGCTGGACGGCCTGGTGTGGCCGCTCGTGCC
GAACTCCAAGAAGGAAGGGGACAGGAGCACCACGTGGGCGAACAAGCAGG
CCTTGGCAGCAGCGATCGGGGCCGTGGACCCCGCCCTTGCCGAGAGGGTC
CTTGGCGAACGCCAGTGGCGGCAGAAGTACACCAAGTACGTCTACAAGCA
CGTGGAGTCCTGCCTGCAGAACAAGGAGGCGGCTGTGGCCAGCAGCAAGG
CTGGGCTGGAGTGGGTGCACAACAACTTCGAGTTCGTGCGGGATGGCAAG
AGCATGAAGCTTGCCGAGGCCATGTCGAGCATCACCGGGTCGTTCGAGAC
CGGCTACTTGAAGGGGAGCAAGCCGAAGCCCACGGAGACGGTGTTGGAG
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