mRNA_P-littoralis_Contig760.50.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: D8LB55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB55_ECTSI) HSP 1 Score: 248 bits (632), Expect = 2.450e-77 Identity = 120/133 (90.23%), Postives = 127/133 (95.49%), Query Frame = 1
Query: 16 MPPSSRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPTETVLE 414
MPPSSRPLDGLVWPLVPNSKK GDRSTTWANKQALAAAIGAVDPALA+RVL ER WRQKYTKYVYKHVE+CLQ+KEAAVASSKAGLEWVHNNFEFVR+GKSMKLA AMSSITGSFET +KG+KPKPTETVL+
Sbjct: 1 MPPSSRPLDGLVWPLVPNSKKAGDRSTTWANKQALAAAIGAVDPALAQRVLDERNWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHNNFEFVREGKSMKLAAAMSSITGSFETAVIKGTKPKPTETVLQ 133
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A835Z6A9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A9_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.140e-41 Identity = 70/126 (55.56%), Postives = 95/126 (75.40%), Query Frame = 1
Query: 19 PPSSRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKP 396
PP RP G+ WPLVPNSKKEGDRSTT+ANK AL AA GA+ P A + ER WR+ Y KY+ +HV +CL+ K+ AV +++AGL+WVH+NFEF++DGK+M L+ AM++I +F+T + GS P+P
Sbjct: 3 PPPRRPPAGIQWPLVPNSKKEGDRSTTYANKAALKAASGAIRPEEAAAIDAERNWRKNYGKYLLRHVSACLEVKDGAVTAAEAGLQWVHDNFEFIKDGKTMPLSTAMATIKSTFKTATVTGSVPRP 128
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A0L0G802_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G802_9EUKA) HSP 1 Score: 112 bits (281), Expect = 3.280e-29 Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 1
Query: 40 DGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPTE 402
+G+V+P EG RST A + A AAAIGA+D E+ L E+ WR+ YTK+V K VE + + +AAV ++AGLE +H+ F+FVRDG +M +++AM+SI+ SFETG +KGSKP E
Sbjct: 10 EGIVFP----EDGEGGRSTQIAGRAAYAAAIGAIDKIAGEKTLKEKSWRKGYTKHVTKFVELSVVDAKAAVIGAEAGLEHMHDQFQFVRDGTAMSISKAMTSISTSFETGIVKGSKPMGKE 126
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A7S2ABF6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2ABF6_9EUKA) HSP 1 Score: 112 bits (279), Expect = 8.690e-29 Identity = 53/119 (44.54%), Postives = 84/119 (70.59%), Query Frame = 1
Query: 43 GLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPT 399
G+ +P+ +K+ GDR+TT K+ AAA+ V+ A+ + GE+ WR +Y KYV ++VE LQ+ E A++ ++ GL+W++ NFEFVRDG++M L EA+ +I GSF TG+++G+ KPT
Sbjct: 8 GVQFPVT--NKETGDRNTTPTQKKLWAAAVQEVNQQAAKAIAGEKSWRHRYNKYVIQNVELSLQSPENALSIARNGLDWIYENFEFVRDGETMNLNEALENIKGSFYTGFVQGTVKKPT 124
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A139AEM4_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AEM4_GONPJ) HSP 1 Score: 117 bits (293), Expect = 3.950e-28 Identity = 58/122 (47.54%), Postives = 85/122 (69.67%), Query Frame = 1
Query: 34 PLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGS-FETGYLKGSKPKP 396
P DGLV+P P+ K+ G+R +T+ NK A AAAIGA+ PA AE++ E+ WR YTKY+ K VE ++ + A+A +K GL++ +NNFEFVR+GK L +A+ + T F+TG++KG+ KP
Sbjct: 9 PEDGLVFP--PDPKRPGERGSTFGNKGAWAAAIGAISPADAEKIQKEKDWRNNYTKYIIKQVEESARSPQKAIAVAKGGLDYCYNNFEFVREGKVSTLQQALDTYTTPIFKTGFIKGTGEKP 128
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A7S3V160_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V160_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.450e-25 Identity = 55/123 (44.72%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 28 SRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKP 396
+RP DGLVWP+ ++ G+RST+ NK A++ VD +LA+ + R WR Y KYV K++ CL+++ A+A +K GL F FVRDGK+ L +AM+SITG+F TG++KG+ KP
Sbjct: 209 ARPADGLVWPVT--NEATGERSTSVTNKAIWEASVRGVDNSLADSIKKTRSWRFGYVKYVEKNLRCCLKSEANALAVAKQGLSAAKEKFLFVRDGKTQSLKDAMNSITGTFHTGFVKGTGSKP 329
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A7S3W6Z5_9SPIT (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3W6Z5_9SPIT) HSP 1 Score: 108 bits (270), Expect = 8.720e-25 Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 1
Query: 34 PLDGLVWPLVPNSKKEGD--RSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPTETVLE 414
P+DGL WP V +EG RST K+ LA A+ AVD + A V E+ WR KY ++ K VE + EAA+ + AGL+++++ FEF+RDGK+ L +A++ GSF TG++KG+KPKP + LE
Sbjct: 10 PIDGLSWP-VTGVDEEGKQARSTQTTGKEILAVALEAVDASAAAAVRSEKGWRFKYRRHFVKSVEVSASSPEAALKVAAAGLDYMYDKFEFIRDGKTYVLRDALAQFKGSFATGFIKGNKPKPNKFELE 137
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: W7TMF0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF0_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.040e-21 Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 46 LVW---PLVPNSKKEGDRS--------TTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGS--FETGYLKGSKPKP 396
L+W P VP +K S +T+ NK A AAA+GAVD A ++ E+QWRQKY KY+ + V+ L++ + AV+ ++ GLE+ + NFEF+RDGK+ KL EAM GS +ETG +KG P
Sbjct: 35 LIWGNQPRVPRDQKLASYSLRIKRAAGSTFGNKGAWAAAVGAVDKAEGLKIEKEKQWRQKYAKYIVRQVQVGLKSPKNAVSVAQGGLEYCYQNFEFIRDGKTYKLGEAMEKFGGSHSYETGVIKGEGKLP 164
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A0L0GFC7_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GFC7_9EUKA) HSP 1 Score: 97.1 bits (240), Expect = 8.150e-21 Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 1
Query: 58 LVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGSFETGYLKGSKPKPTETVLE 414
L P +K G RST A ++A AAAIGA++ E+ WR Y K+V + VE L++ E AV ++AGL++VH++FEF R K M ++EAMSSI SFETGY+KG K T E
Sbjct: 16 LFPKDRK-GGRSTQDAGREAYAAAIGAMEIRDGANCTAEKGWRYGYAKHVMQFVELSLKSPEHAVKGAQAGLDFVHDHFEFKRGDKIMSISEAMSSIKDSFETGYIKGEKGGEKVTEFE 133
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Match: A0A7S1IIG4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IIG4_9EUGL) HSP 1 Score: 89.4 bits (220), Expect = 6.770e-20 Identity = 48/121 (39.67%), Postives = 78/121 (64.46%), Query Frame = 1
Query: 28 SRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVLGERQWRQKYTKYVYKHVESCLQNKEAAVASSKAGLEWVHNNFEFVRDGKSMKLAEAMSSITGS-FETGYLKGSK 387
S ++G+ +P N K RSTT A K A AAA+ A+D LA+++ GE+ WR KY ++ + + L++ ++A+ ++AGL+ +HN FEFVRDG+S+ L +AM ++T F G +KG +
Sbjct: 5 STQMEGIAFP---NDGK--GRSTTIAGKNAWAAAVEAIDANLAKQIQGEKDWRHKYPSHLMQVTTAMLRSPQSALGIARAGLQHMHNAFEFVRDGRSLPLTKAMETLTEPLFTAGIIKGEQ 120 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig760.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig760.50.1 >prot_P-littoralis_Contig760.50.1 ID=prot_P-littoralis_Contig760.50.1|Name=mRNA_P-littoralis_Contig760.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp MPPSSRPLDGLVWPLVPNSKKEGDRSTTWANKQALAAAIGAVDPALAERVback to top mRNA from alignment at P-littoralis_Contig760:134719..135132- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig760.50.1 ID=mRNA_P-littoralis_Contig760.50.1|Name=mRNA_P-littoralis_Contig760.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig760:134719..135132- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig760:134719..135132- >mRNA_P-littoralis_Contig760.50.1 ID=mRNA_P-littoralis_Contig760.50.1|Name=mRNA_P-littoralis_Contig760.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig760:134719..135132- (Pylaiella littoralis U1_48)back to top |