mRNA_P-littoralis_Contig760.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig760.23.1
Unique NamemRNA_P-littoralis_Contig760.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig760.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig760contigP-littoralis_Contig760:54942..55219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size236
Hectar predicted targeting categorysignal peptide
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791572.984274-CDS-P-littoralis_Contig760:54941..550231680791572.984274-CDS-P-littoralis_Contig760:54941..55023Pylaiella littoralis U1_48CDSP-littoralis_Contig760 54942..55023 -
1680791573.0078769-CDS-P-littoralis_Contig760:55066..551911680791573.0078769-CDS-P-littoralis_Contig760:55066..55191Pylaiella littoralis U1_48CDSP-littoralis_Contig760 55067..55191 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791573.0229497-UTR-P-littoralis_Contig760:55191..552191680791573.0229497-UTR-P-littoralis_Contig760:55191..55219Pylaiella littoralis U1_48UTRP-littoralis_Contig760 55192..55219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig760.23.1prot_P-littoralis_Contig760.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig760 54942..55191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig760.23.1

>prot_P-littoralis_Contig760.23.1 ID=prot_P-littoralis_Contig760.23.1|Name=mRNA_P-littoralis_Contig760.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MRRQTSYFSTFFSFFWSLHYVPNSHFSVLHGTFLTTRNATMVRMNDAAVL
HITFLMAFHMCQTATCVYC
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mRNA from alignment at P-littoralis_Contig760:54942..55219-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig760.23.1 ID=mRNA_P-littoralis_Contig760.23.1|Name=mRNA_P-littoralis_Contig760.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=278bp|location=Sequence derived from alignment at P-littoralis_Contig760:54942..55219- (Pylaiella littoralis U1_48)
GCATAGCACATTCTTGACAACACGGAAAATGCGACGACAGACAAGTTATT
TTTCTACTTTTTTTTCTTTCTTCTGGTCTCTTCATTACGTGCCAAACAGC
CACTTTAGTGTACTGCATGGCACATTCTTGACAACAAGGAATGCGACGAT
GGTATCATTTTTTTTTAATATTATTCTTGATCGTTCAAAGTTGTTTTCGT
ATGAATGACGCAGCAGTATTGCATATTACATTCCTCATGGCGTTCCATAT
GTGCCAAACAGCCACTTGCGTGTACTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig760:54942..55219-

>mRNA_P-littoralis_Contig760.23.1 ID=mRNA_P-littoralis_Contig760.23.1|Name=mRNA_P-littoralis_Contig760.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig760:54942..55219- (Pylaiella littoralis U1_48)
ATGCGACGACAGACAAGTTATTTTTCTACTTTTTTTTCTTTCTTCTGGTC
TCTTCATTACGTGCCAAACAGCCACTTTAGTGTACTGCATGGCACATTCT
TGACAACAAGGAATGCGACGATGGTTCGTATGAATGACGCAGCAGTATTG
CATATTACATTCCTCATGGCGTTCCATATGTGCCAAACAGCCACTTGCGT
GTACTGC
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