mRNA_P-littoralis_Contig76.80.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 238 bits (608), Expect = 2.630e-74 Identity = 142/282 (50.35%), Postives = 171/282 (60.64%), Query Frame = 1
Query: 43 CGACLSGDDGSGIRAPRARAAERIYAFAREPEISAMFPN--RTFGGEDPLRLCKRKGCMLKLLEAR---KTKERKQQSIHQ-PGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYL-ASGDQQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMGPCGDRG*WLQRNPTSICVFLMRGRYTPAHVTPAHVMVGEFWGVWYKAG--VGKRG-TRLVYC 858
C ACL + G R RAR E + +F E I+ FP G + L LCKR GC+L+L + + +++ER + Q P R PEPV H KRR LDRYCT P AVE L V I G VLDMC G EDAVA ++C V TNDV +R TNLDAS +F + A+ +QPD VVTSPPYKGA+ FVK A+ VA GVALKLP SF+ PC DRG WL NP ++C+FL R +YT AH HV VGEFWGVWY G GK G +RLV+C
Sbjct: 25 CSACL--EWGQDFRHTRARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAH----HVKVGEFWGVWYTDGGCCGKSGGSRLVFC 300
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 234 bits (598), Expect = 7.040e-73 Identity = 143/296 (48.31%), Postives = 175/296 (59.12%), Query Frame = 1
Query: 34 SVICGACLSGDDGSGIRAPRARAAERIYAFAREPEISAMFPN-RTFG-GEDPLRLCKRKGCMLKLLE----------ARKTKERKQQSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTR------RGVDTNLDASAPTFAQEYLASG-DQQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMGPCGDRG*WLQRNPTSICVFLMRGRYTPAHVTPAHVMVGEFWGVWYKAGVGKR---GTRLVY 855
S C ACL DD +G R R R + AF R ++ FP G G D L CKR C+LK + ARK K+++ +S T PEP +H+KRRHLDRYCTS AVEAL+ V + G VLDMC G +DAVA L +C V TNDV +R R DT+LDAS TFA E+LA G QQP+ VV SPPYKGA+ FVK A+ VA++GVALK SF+ PC DR WL+ NP ++CVFL R YTP HV M+GEFWGVWY G + GT+LV+
Sbjct: 10 SETCDACLREDDAAGYRQLRPRTMSMLRAFVRNAGLAEKFPGVMPLGVGIDSLVRCKRAECVLKQNDKHMSDFCHDRARK-KQKRNRSEAATWTS-----APEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHV-----MMGEFWGVWYCTGGDRTAVGGTKLVF 294
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 219 bits (559), Expect = 6.380e-68 Identity = 115/217 (53.00%), Postives = 143/217 (65.90%), Query Frame = 1
Query: 178 DPLRLCKRKGCMLKLLEARKTKERKQQSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLASGD-QQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMGPCGDRG*WLQRNPTSICVFLMRGRYTPAHVTPAHVMVGEFWGVWYKAG 825
D L LCKR GC+L+L + ++ + + + K PEPV LKRR +DRYCTSPA +EAL+ V I G VLDMC G +DAVA+ L +C V TNDV R TNLDAS+ +F ++LA+ QQPD +VTSPPYKGA+ FVK A+ VA+ GVALKLP SF+ PC DR WLQ NP ++C+ + R RY PAHV VGEFWGVWY G
Sbjct: 16 DKLVLCKRAGCLLELFVLNQQRDSRAPTKRRAKRGPKWTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVR-----VGEFWGVWYPPG 227
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 187 bits (475), Expect = 1.280e-55 Identity = 96/189 (50.79%), Postives = 122/189 (64.55%), Query Frame = 1
Query: 298 VPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLAS-GDQQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMGPCGDRG*WLQRNPTSICVFLMRGRYTPAHVTPAHVMVGEFWGVWYKAGVGKRG-TRLVYC 858
PEP HL+RR LDRYCTSP A++A + V I G VLDMC G DAVA L ++C + TNDV + R DTNLDAS +F +++LA+ ++P+ V TSPPY A+ FVK AM +A GV K+ F+ PC D G WLQ NP S+CVFL R +YT A+ + EFWGVWY + R TRLV+C
Sbjct: 15 APEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRAN----NAKTSEFWGVWYTQEMSCRNRTRLVFC 199
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 182 bits (463), Expect = 1.520e-53 Identity = 109/222 (49.10%), Postives = 135/222 (60.81%), Query Frame = 1
Query: 121 FAREPEISAMFPNRTFGGEDPLRL--CKRKGCMLKLLEAR-------KTKERKQQSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGV-----DTNLDASAPTFAQEYL-ASGDQQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMGPCGDRG*WLQRNPTSICVFL 741
F R FP+ G RL C R C+L+L + +TK R QQ + + G K +PEP H+KRR LDRYCTSP AVEAL+ V +EG VLDMC G DA+A LG +C V TND+ TR DTNLDAS +FA ++L A Q+PD V+TSPPYKGA+ +VK A+ +A GVALKLP SF+ PC DRG WLQ NP ++CVF
Sbjct: 3 FYRRGRHGRKFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLRAQQ-LARHGAKWTG--IPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 157 bits (396), Expect = 2.080e-43 Identity = 97/208 (46.63%), Postives = 122/208 (58.65%), Query Frame = 1
Query: 91 RARAAERIYAFAREPEISAMFPNRTFGG--EDPLRLCKRKGCMLKLL---EARKTKERKQ-----QSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLA-SGDQQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMG 681
R R + ++ AF E I+ FP GG L LCKR GC+L+L E R +KER + ++ P + VPEP HLKRR LDRYCTSP AVEAL+ V I G +LD+C G DAVA LG +C V TNDV + R DTNLDAS +F ++ A S ++PD VVTSP YK A+ FVK AM +A GV + P +G
Sbjct: 2 RPRTSSQVRAFVDEIGIANQFPALDEGGLGASTLTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWTVPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAPTGVVG 209
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE) HSP 1 Score: 143 bits (360), Expect = 2.890e-39 Identity = 68/112 (60.71%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 502 DTNLDASAPTFAQEYLASGD-QQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMGPCGDRG*WLQRNPTSICVFLMRGRYTPAHVTPAHVMVGEFWGVWYKAGVGK 834
DTNLDAS+ ++A +YLA+ + QQPD VV SPPYKGA++FVK A+ VA+ GVALKLP SF+ PC DR WLQ NP S+C+ + R RY PAHV VGEFWGVWY G G
Sbjct: 13 DTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVR-----VGEFWGVWYPPGGGS 119
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 141 bits (356), Expect = 1.190e-38 Identity = 80/151 (52.98%), Postives = 92/151 (60.93%), Query Frame = 1
Query: 412 MC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLASGDQQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMGPCGDRG*WLQRNPTSICVFLMRGRYTPAHVTPAHVMVGEFWGVWYK-AGVGKRG-TRLVYC 858
MC G EDAVA+ G +C V TNDV +R L + P +QPD VVTSPPYKGA+ FVK + VA GVAL+LP SF PC DRG WL NP +C FL R +YT AH HV VGEFWGVWY G GK G +RLV+C
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSSR------LSPAHP----------GKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAH----HVKVGEFWGVWYTDGGCGKSGGSRLVFC 131
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE) HSP 1 Score: 137 bits (346), Expect = 1.230e-36 Identity = 67/122 (54.92%), Postives = 84/122 (68.85%), Query Frame = 1
Query: 502 DTNLDASAPTFAQEYLASG-DQQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMGPCGDRG*WLQRNPTSICVFLMRGRYTPAHVTPAHVMVGEFWGVWYKAGVG---KRGTRLVY 855
DTNLDAS+ +F ++LA+ +QQPD VVT PPY GA+ FVK A+ VA+ GVALKLP SF+ PC DR WLQ NP ++C+ + R RY PAHV VGEFWGVWY G G T+L++
Sbjct: 54 DTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVR-----VGEFWGVWYPPGSGYSSSDSTKLLF 170
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.600e-35 Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 490 RRGVDTNLDASAPTFAQEYLASGD-QQPD*VVTSPPYKGAINFVKGAM*VARYGVALKLP*SFMGPCGDRG*WLQRNPTSICVFLMRGRYTPAHVTPAHVMVGEFWGVWYKAGVGKRG---TRLVY 855
R DTNLDAS+ +FA +YLA+ + QQPD VV+SPPY+GA+ FVK A+ VA+ GVALKLP SF+ PC DR WLQ NP ++C+ + R RY PA V VGEF GVWY G G T+L++
Sbjct: 10 RLSPDTNLDASSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQPALVR-----VGEFRGVWYPPGSGSSSSDSTKLLF 130 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig76.80.1 >prot_P-littoralis_Contig76.80.1 ID=prot_P-littoralis_Contig76.80.1|Name=mRNA_P-littoralis_Contig76.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp MSVICGACLSGDDGSGIRAPRARAAERIYAFAREPEISAMFPNRTFGGEDback to top mRNA from alignment at P-littoralis_Contig76:193975..196311+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig76.80.1 ID=mRNA_P-littoralis_Contig76.80.1|Name=mRNA_P-littoralis_Contig76.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2337bp|location=Sequence derived from alignment at P-littoralis_Contig76:193975..196311+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig76:193975..196311+ >mRNA_P-littoralis_Contig76.80.1 ID=mRNA_P-littoralis_Contig76.80.1|Name=mRNA_P-littoralis_Contig76.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig76:193975..196311+ (Pylaiella littoralis U1_48)back to top |