mRNA_P-littoralis_Contig76.176.6 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig76.176.6 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE) HSP 1 Score: 738 bits (1905), Expect = 1.490e-241 Identity = 559/912 (61.29%), Postives = 616/912 (67.54%), Query Frame = 2
Query: 1178 MTAVDGWGAXXXXXXXXXXXXXXXXXXXXXXXXKVVARSGREDVAXXXXXXXXXXXXXXXXXXXXXXXXACASREKWQEAVELLEVDMPGAKVKXXXXXXXXXXXXXAGPAGNWEKAYELLDGMWQDSKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLDCLADGEQWADVLVYLDRMVTDGVVPDAAATNTAVLAAAELGDGRRALSLLEGEAAHGSLAERQRRQGVVRDV--VEGEGYSDDLPQQGLQXXXXXXXXXQRERVVLGKKGEDGGGHCTTGSAQAEANVVKAEXXXXXXXXXXXXXXXXXXXXXTRDEGEGWSGXXXXXXXXXXXXXXXXXXXXXXXXXXVKGSTVARRLSRLAGEAGAAGATCVVEAEAGGNSR-GRDSAS-GDGVLEGGWETATPSLLNSVLHALYEAGEDAAVLEAVKRWREKGVLLNPSIYRCALKACGNLGDYNQANDILARMAEELLTPDIVHWNHALRASAACARWREARSRLKEMEVFNISPDEFSYSMALKACSAGLWSGDSWSHRSGW-AKEDGSTSSPPPAQDSSREGRWGSSRGEQQQSKVSPPSRGENAIELLSEMREKGVRLSARSFTLAMAACLESHRDKHAEVEEAGLHNRQRERQPPAADLRLSEAALSLFDQLAVAGETPNASTYALALKACARTANTRRAHNLFWAILDTPAPXXXXXRGSVRTPPSSSSLSLPSSRKNTFGDHGIRPPAAAFHRAERPQQPPPHPQSELRLEVRPWHLASAISAFGAAKDWAGAQQLWDEALRRGVSPRSPGYDAAVLAAVRAGETAAARRLVEEARALGLALS 3898
MTAVDGWGA VVARSGREDVA XXXXXXXXXXXX ACASREKWQEAVELLEVDMP AKVKXXXXXXXXXXXXXAGP GNWEKAY+LLD MWQD +GA+P+K TYDLVIQACGHGGEWELGV LIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALL LA+GE+WADVLVY+DRMV DGV DAAATNTAVLAAAELGDGRRALSLLEG GS R++ +VRD EG G + L GLQ +R R +G DGG G + E E E G AR + GE CV E G R G DS S DGV GGWE TP LL SVL AL E ED+AVLEAVKR REKGVLLNPSIYRCALKACGNLGDY+QANDIL RMAEE LTPDIVHWNHALRASAACARW+E R RLKEME +PDEFSYSMALKACSAGLWSGDSW GW A+ED S+ A + EG+ S G++++ KV RG+NAIELL EM+++GVRLSA ++TLAMAACLE HRD+H E+E AGL +E+ PP+ADLRL+EAAL LFD+L AGETP A YA ALKACARTAN +RA+ LFW +LD +P +V+T S +L S R G++ A R RP PP + R EVRPWHLASAI+A+ AA DW GA+QLWDEALRRGVSPRSPGYDAAV A+RAG+TAAAR+LVEEAR L L L+
Sbjct: 336 MTAVDGWGAALRLLEGVLPDVNTYNAAL-----SVVARSGREDVALALLNRMRIDGXXXXXXXXXXXXDACASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLGALAEGERWADVLVYMDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEG--GEGSQQRGGRQREMVRDAGGEEGGGSDNRLLWDGLQ---------RRRRPAAVDEG-DGGRGVVLGQGELEG------------------------------ETEALLGRRQRAATAAGEKRHGEESEVRARTRIRPCPEAARERQGVLGEQ-----NCVDEESEDGTRRTGGDSDSVDDGV--GGWEGVTPGLLISVLRALDEQDEDSAVLEAVKRGREKGVLLNPSIYRCALKACGNLGDYDQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLKEMETSGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSSCRRKNALNG--EGQLDGS-GDKKEPKVPQACRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELE-AGLD---KEKGPPSADLRLAEAALLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWFMLDAASPP-----AAVQT-----SSNLSSLRNGASGNYV----ADGQRRHSRPPSPP-----QPRPEVRPWHLASAIAAYDAAGDWTGAKQLWDEALRRGVSPRSPGYDAAVSVALRAGDTAAARQLVEEARGLRLELA 1167
BLAST of mRNA_P-littoralis_Contig76.176.6 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI) HSP 1 Score: 704 bits (1817), Expect = 3.170e-234 Identity = 500/828 (60.39%), Postives = 560/828 (67.63%), Query Frame = 2
Query: 1439 MPGAKVKXXXXXXXXXXXXXAGPAGNWEKAYELLDGMWQDSKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLDCLADGEQWADVLVYLDRMVTDGVVPDAAATNTAVLAAAELGDGRRALSLLEGEAAHGSLAERQRRQGVVRDVVEGEGYSDDLPQ--QGLQXXXXXXXXXQRER---VVLGKKGEDGGGHCTTGSAQAEANVVKAEXXXXXXXXXXXXXXXXXXXXXTRDEGEGWSGXXXXXXXXXXXXXXXXXXXXXXXXXXVKGSTVARRLSRLAGEA-GAAGATCVVEAEAGGNSRG--RDSASGDGVLEGGWETATPSLLNSVLHALYEAGEDAAVLEAVKRWREKGVLLNPSIYRCALKACGNLGDYNQANDILARMAEELLTPDIVHWNHALRASAACARWREARSRLKEMEVFNISPDEFSYSMALKACSAGLWSGDSWSHRSGWAKEDGSTSSPPPAQDSSREGRWGSSRGEQQQSKVSPPSRGENAIELLSEMREKGVRLSARSFTLAMAACLESHRDKHAEVEEAGLHNRQRERQPPAADLRLSEAALSLFDQLAVAGETPNASTYALALKACARTANTRRAHNLFWAILDTPAPXXXXXRGSVRTPPSSSSLSLPSSRKNTFGDHGIRPPAAAFHRAERPQQPPPHPQSELRLEVRPWHLASAISAFGAAKDWAGAQQLWDEALRRGVSPRSPGYDAAVLAAVRAGETAAARRLVEEARALGLALS 3898
MP AKVK AGP GNWEKAY+LLD MWQD +GA+P+K TYDLVIQACGHGGEWELGV LIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFD+ARYVHRIRPSLQIYGALL LA+GE+WADVLVYLDRMV DGV DAAATNTAVLAAAELGDGRRALSLLEG GS R++GV RDVV EG D Q GLQ + + VVLG+ +G + EA + + + +E E V+ T R S AGE G V+ EA +R RDS S D + GGWE TP LLNSVL AL E ED+AVLEAVKR REKG+LLN SIYRCALKACGNLGDY QANDIL RMAEE LTPDIVHWNHALRASAACARW+E R RL+EME F +PDEFSYSMALKACSAGLWSGDSW GW E+ TSS S EG+ SS G++Q+ KV RG++AIELL EM+++GVRLSA ++TLAMAACLE HRD+H E+E AGL +E+ PP+ADLRL+EA L LFD+L AGETP A YA ALKACARTAN +RA+ LFW +LD +P +VRT ++SSL GDH A+ R P PP P R EVRPWHLAS I A+ AA DWAGA+QLWDEALRRGVSPRSPGYDAAV AA+RAG+TAAAR+LVEEAR L L L+
Sbjct: 1 MPAAKVKPDVISFTSAIHACAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEG--GEGSQQRGGRQRGVARDVVGEEGGGSDNRQLCDGLQRRRRPAGVDEGDGIRGVVLGQGELEG---------EPEALLERRQRAATAGGEKRHG-----------EESE------------------------------VRARTRIRSSSEAAGERQGVVADENGVDEEAQDGTRRTERDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGILLNQSIYRCALKACGNLGDYQQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEE-DTSSSRRRNALSSEGQLDSS-GDKQEPKVPQACRGKSAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELE-AGLD---KEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWVMLDDASPP-----AAVRTSSTASSLC-----NGASGDH-----VASGQRRHSPPPSPPQP----RPEVRPWHLASTIVAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTAAARQLVEEARGLRLELA 751
BLAST of mRNA_P-littoralis_Contig76.176.6 vs. uniprot
Match: D7FQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ89_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 3.240e-7 Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 2
Query: 437 MMAAAKSRRWREVLGILNHWEEHAARLDAKTYNVSLSAL 553
MMAAA+ RRW EVL IL HWEE+A RLDAKTYNV+LSAL
Sbjct: 1 MMAAARRRRWTEVLEILGHWEENAGRLDAKTYNVALSAL 39 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.176.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig76.176.6 >prot_P-littoralis_Contig76.176.6 ID=prot_P-littoralis_Contig76.176.6|Name=mRNA_P-littoralis_Contig76.176.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1286bp MVTSCAGLASCSAAPASKQHAFVANTVPRLSRVRQRAFSCQHQQAPAAAAback to top mRNA from alignment at P-littoralis_Contig76:490967..501907+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig76.176.6 ID=mRNA_P-littoralis_Contig76.176.6|Name=mRNA_P-littoralis_Contig76.176.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=10941bp|location=Sequence derived from alignment at P-littoralis_Contig76:490967..501907+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig76:490967..501907+ >mRNA_P-littoralis_Contig76.176.6 ID=mRNA_P-littoralis_Contig76.176.6|Name=mRNA_P-littoralis_Contig76.176.6|organism=Pylaiella littoralis U1_48|type=CDS|length=3858bp|location=Sequence derived from alignment at P-littoralis_Contig76:490967..501907+ (Pylaiella littoralis U1_48)back to top |