mRNA_P-littoralis_Contig76.175.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.175.1
Unique NamemRNA_P-littoralis_Contig76.175.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig76.175.1 vs. uniprot
Match: D7FQ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ88_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 4.320e-86
Identity = 138/235 (58.72%), Postives = 161/235 (68.51%), Query Frame = 1 
Query:    1 RTRLPTISPLADPAPKYAGRQKYGPRKPSFWKSESDRYWEKCRQKKQSARRKSAA-------VGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQAASTTEKDISHGLQLQTMACVGSSKRHNLESETCANVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTGCTGGRHRDCVRPSTERCEYNCASYRNQLPKPTIFNQCLRSCLEVVDNACLKAKELFVSAELFD 684
            R RLP ISP A+PAPKY GR ++G R+ SFWKSESD+YWEKCR   +S +RK+         V L                                    E+AA   +   ++GL+L+T+ACVGS K+H LES+TCA VCAKARTTAPRPLAHRSCLAGCRAGVTTAWDT C GGRHRDCVR STERC+++CASYRNQ PKPTIFNQCLRSCL+VVD  CLK+KE+F SAE FD
Sbjct:    4 RQRLPVISPSAEPAPKY-GRHQHGARRTSFWKSESDQYWEKCRHNTRSRQRKAVGLTAVVVVVSLLLLAAGLRGRRTEPVVEEEGATSSLDRTGELITSSLEEAAPADDSGNTNGLRLKTLACVGSGKKHELESKTCAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFD 237
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BLAST of mRNA_P-littoralis_Contig76.175.1 vs. uniprot
Match: A0A835ZJF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.360e-12
Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:  388 CANVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTGCTGG-----RHRDCVRPSTERCEYN---CASYRNQLPKPTIFNQCLRSCLEVVDNACLKAKELF 663
            C+N+CA+AR +  +PLAHR+C+ GC  G    WD GC  G       +   + ++ R +     C+++RN  P+P + NQC   C E     C +AK+ F
Sbjct:  153 CSNLCARARFSGSKPLAHRACMVGCEGGSMAGWDAGCGSGPASASETQVVCKQASARLDCRGTVCSAFRNAYPRPAVINQCTSGCAEAAFQGCSRAKDFF 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ88_ECTSI4.320e-8658.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZJF1_9STRA1.360e-1235.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:488063..490593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1015
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_007040.1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791570.5198703-UTR-P-littoralis_Contig76:488062..4883571680791570.5198703-UTR-P-littoralis_Contig76:488062..488357Pylaiella littoralis U1_48UTRP-littoralis_Contig76 488063..488357 -
1680791570.5817997-UTR-P-littoralis_Contig76:490386..4905931680791570.5817997-UTR-P-littoralis_Contig76:490386..490593Pylaiella littoralis U1_48UTRP-littoralis_Contig76 490387..490593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791570.5513542-CDS-P-littoralis_Contig76:488357..4886491680791570.5513542-CDS-P-littoralis_Contig76:488357..488649Pylaiella littoralis U1_48CDSP-littoralis_Contig76 488358..488649 -
1680791570.5622237-CDS-P-littoralis_Contig76:489547..4897301680791570.5622237-CDS-P-littoralis_Contig76:489547..489730Pylaiella littoralis U1_48CDSP-littoralis_Contig76 489548..489730 -
1680791570.5721505-CDS-P-littoralis_Contig76:490348..4903861680791570.5721505-CDS-P-littoralis_Contig76:490348..490386Pylaiella littoralis U1_48CDSP-littoralis_Contig76 490349..490386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.175.1prot_P-littoralis_Contig76.175.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 488358..490386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.175.1

>prot_P-littoralis_Contig76.175.1 ID=prot_P-littoralis_Contig76.175.1|Name=mRNA_P-littoralis_Contig76.175.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
MLFLGRRRGGAAVNTDETISTSTTPEQAASTTEKDISHGLQLQTMACVGS
SKRHNLESETCANVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTGCTGG
RHRDCVRPSTERCEYNCASYRNQLPKPTIFNQCLRSCLEVVDNACLKAKE
LFVSAELFDGEGSKGQTVTG*
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mRNA from alignment at P-littoralis_Contig76:488063..490593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.175.1 ID=mRNA_P-littoralis_Contig76.175.1|Name=mRNA_P-littoralis_Contig76.175.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2531bp|location=Sequence derived from alignment at P-littoralis_Contig76:488063..490593- (Pylaiella littoralis U1_48)
AGGACGAGGCTGCCAACTATAAGCCCTCTCGCCGATCCAGCGCCCAAATA
TGCCGGACGGCAGAAATACGGCCCAAGAAAACCGTCATTCTGGAAGTCAG
AGTCTGATCGGTATTGGGAAAAATGTCGACAGAAAAAACAATCCGCGAGG
AGAAAGTCTGCTGCTGTTGGGTTGGCAACCGTTGTATTGTTGGCTGTTGC
TGTGGCGATGCTGTTTCTGGGCCGCCGGCGGGGGGGCGCAGCGGTGTCAG
CAGCAGGAAAGTGAGTGTTGCGCGGTCAACTCACTCGGTGTGTCACCCGT
GTGTAGTAAATATTGTGGGGTGTACCAGGTACTACTTGTGTACTGTATAA
AACGCAGAGATTTCGGAGACACCGTGCAGGGAAAAAGTATCATACGAACT
GCCTTGCTTGCTTGACTTTGTTGAAAAAAGGTTCGACAACGTTCGATGTG
CATGTTTCACTCTTTGTTACACATTTTCGCGAGGGAGATCGTCAGAACTC
CAGCATAGTACATACCAGGTATACGGCAACGCATAAATAACTCACTTTTC
TGCTTCATTCAAGTAGCACAGTAGAGAGTTGACTGACTCCACAATAATGT
ACCAGTATTCGTTTCCCACCGAGGTTCTAAATAGGAACGAGTACGAGTAC
GGTCCCGATGTCTTCACCCGCACCTTACTGTAGGCAAGCACGTTGAGCCC
AATGGTGACAGCTTGCTCTCATGTCGACTATGACCGTGTTTCAGGGGCCG
CCCGTGCACGAACACCCACAAATTGTACAACCTGGTACTGCCATCGTACA
AGTATCGTGATCGAGGCTGCATGTCCCACAAACCTTTATTCCTCTTCATT
TTTCGGAATGCAGCAACACGGACGAGACTATATCTACGAGTACTACTCCC
GAACAAGCGGCATCGACAACGGAGAAAGATATTTCGCACGGCTTGCAATT
GCAGACAATGGCGTGTGTTGGAAGCTCCAAGAGACACAATCTGGAAAGCG
AAACGTGCGCTAACGTATGCGCGAAAGCCCGGACAACAGCACCAAGGTGA
ACATTCCGAGCTGTACACTCATCTTCGACAGGTTGACTGCTGTCATTTGA
CAATTCAACTTGCACCGTAGCCATCAAAGGAATCGTTTCGAGAAACCCCA
TCCACTCGAGCACTTACAGATGAAACGAATATTGACACGCACTCCAATTC
TCTGCCAACGATTCGCTCTCTTCTTTACTGCTATACACCTGGTACTTGCA
ATTTAGCTCAAAACAATACTTCGAAGTACAAAAAGTACGGCTGGAAGGTC
AACGGGTTTAATTTCCCCAAACTTTTGGAGGCAAACGTACGATTGATCGG
TCGGCCAAGTGCGATAGGTAGTGCATACGATGTCTTTGTCTTGTCACTTA
CTTTCCGTCCGACACGGACGGTCCAGCTCGTTGAGACCCGGTGCGCTTTG
TAGGGTGAATGTCGTGACCCACACGTGGTCCTGATGTGCCTCGTACTTGC
TTGCTTTGTACGATACTGTCATGCACATGCTCATGCTCGAAGAATGTAAG
CGACATTGAAACGGTGGAACAGTAATATTACCTTATGGCATGAGAGGGAG
CCCATCGACATGGAGCATGCGCATGCAAAAGTATAAGACTTAGCAGAATT
CTGTACCAGGGTTCAGACAGCGTCACCAAACCAAACCAAGCTTGCTCGCA
AAAATTCGACTGCTGCTGTAATCTACCCACTTCTTCTCAATTCACCTTCG
GTTTACTGGGAAACACAGGGGAAACCGATAAAGGGTACTAACACGGGCTG
CCGGTAGCATAAATTGCTCACAGTAGCAGAGTTGACACAGTAACTCGTCC
AAAGTTGACGAGACACCGCTAATCGCCGCTGATATATCTCCACGCGGTGT
ATCATCCCTTTCTCCGATAAATACACACATCGTGTCTGCGGCAGACCTCT
CGCCCACCGATCGTGCCTGGCCGGGTGTCGAGCTGGCGTCACCACGGCGT
GGGACACAGGATGCACGGGAGGTCGGCACCGCGACTGCGTCAGACCCTCC
ACGGAACGGTGCGAGTACAACTGTGCGAGCTACCGAAACCAGCTCCCAAA
GCCGACTATCTTCAACCAGTGCCTACGCTCGTGCTTAGAGGTTGTGGATA
ACGCATGTCTGAAGGCGAAGGAATTATTTGTATCGGCGGAGTTGTTCGAC
GGCGAAGGGAGCAAGGGCCAAACAGTGACGGGATAGGGGGTATGCGATGA
AGCTTGCTGGCATAGATATGGAGTAAATATACCAAACCATCACACACTCG
GCCCTGTGGGTCTTATTTTTTATACTTTTGGATAAGCAATACCCGGGGTA
TGACAGTTGGGCGAAAGTGGGTATGATGTGCGACAGTTATCCATCGGCGA
CCTCGCACATATCAAGAAATAAGTGTGGAAATGAAACAATCACCCCGTGC
TGTACCCCAATACTTCGTATATTGCAAGACATGAACAACGATACTTAAAA
GGTACAACATGCAAATTCGACGATATCCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig76:488063..490593-

>mRNA_P-littoralis_Contig76.175.1 ID=mRNA_P-littoralis_Contig76.175.1|Name=mRNA_P-littoralis_Contig76.175.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig76:488063..490593- (Pylaiella littoralis U1_48)
ATGCTGTTTCTGGGCCGCCGGCGGGGGGGCGCAGCGGTCAACACGGACGA
GACTATATCTACGAGTACTACTCCCGAACAAGCGGCATCGACAACGGAGA
AAGATATTTCGCACGGCTTGCAATTGCAGACAATGGCGTGTGTTGGAAGC
TCCAAGAGACACAATCTGGAAAGCGAAACGTGCGCTAACGTATGCGCGAA
AGCCCGGACAACAGCACCAAGACCTCTCGCCCACCGATCGTGCCTGGCCG
GGTGTCGAGCTGGCGTCACCACGGCGTGGGACACAGGATGCACGGGAGGT
CGGCACCGCGACTGCGTCAGACCCTCCACGGAACGGTGCGAGTACAACTG
TGCGAGCTACCGAAACCAGCTCCCAAAGCCGACTATCTTCAACCAGTGCC
TACGCTCGTGCTTAGAGGTTGTGGATAACGCATGTCTGAAGGCGAAGGAA
TTATTTGTATCGGCGGAGTTGTTCGACGGCGAAGGGAGCAAGGGCCAAAC
AGTGACGGGATAG
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