mRNA_P-littoralis_Contig76.158.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig76.158.3 vs. uniprot
Match: A0A6H5KE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE27_9PHAE) HSP 1 Score: 879 bits (2271), Expect = 2.380e-304 Identity = 542/983 (55.14%), Postives = 600/983 (61.04%), Query Frame = 1
Query: 103 QGLRVPWSWAARSMVETVMRYPSGLTEAVILAELELLWRRDVRGALVPGKLQAYLDAQYAPLSDVIQACVVRHSDQLVTLVEDHSRSVSCDQSPAKVGMYLHQNFKSCLRYAQEAGHDLLAPGRKVRLTGCRLLTGVAAAVSGSGRAGGGEGG-RRSPGGGDGLSTLLLTEYLAFVLDHRRSDDIRLAAGAFGQTRVRDTFNENSNHEAFFVVCKVLEIRRPRQHNTSSSGQQXXXXXXTLQTVVLECAARMXXXXXXXXXXXQGRWRPSGRVEAGANGGDGRCDSSGGRETVLLHLWDEQTCLTSLFQKGDGLAVYWPWLAEQQQSGDSIHDDSVPLTGRGTSSQQNSLSSQLPLAGDASGWHFEYGSATALFVLPRESRAQLFSAANGNHDNNNAITNSGTGDATGAKGPIEAMTGSGGGGISSRDRSSTAVRAARERVAEGVGRGR---VLHLQDMPVDENGVRDVLQFPRRLCVSDLAPNMSNVSVYGQVVYVVCVPGSSLPAVLPPSRXXXXXXXXXXXXXXXXXXXXXXXLSQLPVKHVXXXXXXXXXXQQPSKDS---TGFGAA-------NVVELWIRDEGGKARVLCCGRKAAADALRCRLGQYVLACGLRTFAAAFPPPDGEAKRPGGDVIVLCGETDETAREDAAAASTGEGRTXXXXXXXXXXXXXXXXXXDNTSRILNTSCLEGLLHCPFLSRHSLLCDRRRAPGPRSSFACKVAVTWVRWSFGGDGLWAFHRRCGTPLPCHYSALGTSADSARHSSRKRPREIRAPGGGGSRTSGAREDVCATCPLCKISVIASR----------------------------------------------ADEAELGYAPLLVALDDGTRCLVAECRSEVVTAALGGINAHVFLQMGQVERKATLDSVIGREIRCVVGGNGAEATADANDVDCFASSGGGDGCSDWGGGDGKIPGRVEFRVERIASANPAADLAHLLS 2871
+G +VP +++ETV RYPSGLTEAVILAELELLWRRDVRGA VPGKLQAYLDAQYAPLSDVIQACVVRHSDQLVTLVEDHS SVS + SPAKV MYLHQNFK CLRYAQ GHDLLAPGRKVRLTGCRLLTG A RRSP G G STLLLTEYLAFVLDHRRSDD+RLA G FG RV++TF E SN+E FFV+CK R +QH XXXXXX RETVL HLWDEQTCLTSLF+KGDGL VYWPWL +QQ S D G SQQ +SSQLPL +SGWHFEYGSATALFVLPRESRAQLFSAAN D+N G G +TG G +E+ + A R A R A GRGR V + +MP+DENGVRDVLQFPRRL V+DLAPN+SN S+YGQVV V VPGSSLPA+LPPSR LSQLP+K V QQ G GA VVEL IRD+ G ARVLCCGRKAAADALRCR GQYVL CGLRTFAAAFPP D + P G V+VLCGE ++ +REDAAA + EGR D+ S +LNTS LEG LHCPFLSRHSLL DRRR PGPR+SFACK AVTW RW+F GDGLWA HRRCG LPCH+SALG SAD AR +SRKR R++R PG + +GAR+ V CPLC+ V AS ADEAELGYAPLL+ALDDGTRCLVAECRS VV+AA GG+NAH FLQM + ERKAT+DS++GREIRCVVGG GA + DW G GRV RVERIAS NPAADLA+L+S
Sbjct: 4 RGPKVPKFRGHTTLIETVRRYPSGLTEAVILAELELLWRRDVRGAFVPGKLQAYLDAQYAPLSDVIQACVVRHSDQLVTLVEDHSCSVSSNLSPAKVDMYLHQNFKPCLRYAQGVGHDLLAPGRKVRLTGCRLLTGAAXXXXXXXXXXXXXXXXRRSPNCG-GPSTLLLTEYLAFVLDHRRSDDLRLAQGMFGGQRVKNTFEEKSNYEEFFVICKG----RKQQHXXXXXXXXXXXXXXXXX-----------------------------------------------RETVLFHLWDEQTCLTSLFRKGDGLGVYWPWLVREQQPRSSGGDQGSAAAPGGLPSQQQLVSSQLPLPRASSGWHFEYGSATALFVLPRESRAQLFSAAN--EDSN------GDGFSTGGPG-VESRSSXXXXXXXXXXXXVVASRKAFSRGAVVNGRGRGGTVGAVHEMPIDENGVRDVLQFPRRLFVTDLAPNLSNASIYGQVVSVASVPGSSLPAILPPSRGMSSLSSS---------------LSQLPLKPVMLMQQELQQLQQQESGMGLVAGRGAXXXXXXXXKVVELLIRDDRGTARVLCCGRKAAADALRCRPGQYVLVCGLRTFAAAFPPSDDSEQGPDGHVVVLCGEAEDMSREDAAATTGAEGRAAAGARAGEAGGGG-----DSVSGVLNTSSLEGFLHCPFLSRHSLLHDRRRTPGPRASFACKAAVTWARWTFDGDGLWAVHRRCGARLPCHFSALGASADPARRTSRKRQRDMREPGCVRNGGTGARQGVSVMCPLCQAGVSASLSSSQFTFVHDTAAAVLTVALISFCHWACVVARARRLLRQRSVRVACADEAELGYAPLLLALDDGTRCLVAECRSAVVSAAFGGMNAHDFLQMDEAERKATVDSLVGREIRCVVGGGGAASEVXXXXXXXXXXX---XXEGDWDGA-----GRVGLRVERIASVNPAADLAYLVS 897
BLAST of mRNA_P-littoralis_Contig76.158.3 vs. uniprot
Match: D7FQ83_ECTSI (CDC24_OB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ83_ECTSI) HSP 1 Score: 696 bits (1797), Expect = 1.160e-234 Identity = 471/965 (48.81%), Postives = 529/965 (54.82%), Query Frame = 1
Query: 10 MDWVQQHCDRLRSNLQHVVDGGATAAQRTGGQGLRVPWSWAARSMVETVMRYPSGLTEAVILAELELLWRRDVRGALVPGKLQAYLDAQYAPLSDVIQACVVRHSDQLVTLVEDHSRSVSCDQSPAKVGMYLHQNFKSCLRYAQEAGHDLLAPGRKVRLTGCRLLTGVAAAVSGSGRAGGGEGGRRSPGGGDGLSTLLLTEYLAFVLDHRRSDDIRLAAGAFGQTRVRDTFNENSNHEAFFVVCKVLEIRRPRQHNTSSSGQQXXXXXXTLQTVVLECAARMXXXXXXXXXXXQGRWRPSGRVEAGANGGDGRCDSSGGRETVLLHLWDEQTCLTSLFQKGDGLAVYWPWLAEQQQSGDSIHDDSVPLTGRGTSSQQNSLSSQLPLAGDASGWHFEYGSATALFVLPRESRAQLFSAANGNHDNNNAITNSGTGDATGAKGPIEAMTGSGGGGISSRDRSSTAVRAARERVAEGVGRGR---VLHLQDMPVDENGVRDVLQFPRRLCVSDLAPNMSNVSVYGQVVYVVCVPGSSLPAVLPPSRXXXXXXXXXXXXXXXXXXXXXXXLSQLPVKHVXXXXXXXXXXQQPSKDSTGFGAA--------NVVELWIRDEGGKARVLCCGRKAAADALRCRLGQYVLACGLRTFAAAFPPPDGEAKRPGGDVIVLCGETDETAREDAAAASTGEGRTXXXXXXXXXXXXXXXXXXDNTSRILNTSCLEGLLHCPFLSRHSLLCDRRRAPGPRSSFACKVAVTWVRWSFGGDGLWAFHRRCGTPLPCHYSALGTSADSARHSSRKRPREIRAPGGGGSRTSGAREDVCATCPLCKISVIASRADEAELGYAPLLVALDDGTRCLVAECRSEVVTAALGGINAHVFLQMGQVERKATLDSVIGREIRCVVGGNGAEATADANDVDCFASSGGGDGCSDWGGGDGKIPGRVEFRVERIASANPAADLAHLLS 2871
MDWVQ+HCDRLRS LQ VVD GA++ G GLRVPWSW R+++ETV RYPSGLTEAVILAELELL G +A SC +S + M ++ C ++ A L CRLLTG STLLLTEYLAFVLDHRRSDD+RLA G FG RV+DTF E SN+E FFVVCK GDGL VYWPWL +QQ S D G SSQQ +SSQLPL D+ GWHFEYGSATALFVLPRESRAQLFSAAN +D+N G G +TG G + R A R A GRGR V +MP DENGVRD+LQFPRRL V+DLAPNMSN S+YGQVV V VPGSSLPA+LPPSR LSQLP+K V XXXXXXXX NVVEL IRD+ G ARVLCCGRKAAADALRCR GQYVL CGLRTFAAAFPP D + P G V+VLCGE +E +REDAAA + EGR XXXXXXXXXXXX D+ S +LNTS LEG LHCPFLSRHS L DRRR PGPR+S ACK AVTW RW+F GDGLWA HRRCG LPCH+SALG SAD AR SRKRPR++R PG S +GA++ V CPLC+ SV + ADEAELGYAPLL+ALDDGTRCLVAECRS VVTAA GG+NAH FLQMG+ ERKAT+DS++GREIRCVVGG+GA + RV RVERIAS NPAADLA+L++
Sbjct: 1 MDWVQEHCDRLRSKLQGVVDSGASSG--AGELGLRVPWSWTCRTLIETVRRYPSGLTEAVILAELELLCEGG-------GTFEA----------------------------------PSCPESFRPISM---RSTPRCPTSSRRASFATLT-------NWCRLLTGAXXXXXXXXXXXXXXXXXXXXXXXXXXSTLLLTEYLAFVLDHRRSDDLRLAQGMFGGLRVKDTFEEKSNYEEFFVVCK-----------------------------------------------------------------------------------------------GDGLGVYWPWLVREQQPRSSGGDQGSAAAPGGLSSQQQLVSSQLPLPSDSFGWHFEYGSATALFVLPRESRAQLFSAAN--NDSN------GDGFSTGGPGVESRSSXXXXXXXXXXXXXVVVSRKATSRGAGVDGRGRGGTVGAAHEMPADENGVRDLLQFPRRLFVTDLAPNMSNASIYGQVVSVASVPGSSLPAILPPSRGMSSSSSS---------------LSQLPLKPVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVVELLIRDDRGTARVLCCGRKAAADALRCRPGQYVLVCGLRTFAAAFPPLDDSEQGPDGHVVVLCGEAEEMSREDAAATTDAEGRAAXXXXXXXXXXXX-----DSVSGVLNTSSLEGFLHCPFLSRHSFLHDRRRTPGPRASLACKAAVTWARWTFDGDGLWAVHRRCGARLPCHFSALGASADPARRISRKRPRDMREPGCVRSGRTGAQQGVSVICPLCQSSVRVACADEAELGYAPLLLALDDGTRCLVAECRSAVVTAAFGGMNAHDFLQMGEAERKATVDSLVGREIRCVVGGDGAASEVXXXXXXXXXXX--------XXXXXXXXXXRVGLRVERIASVNPAADLAYLVA 781
BLAST of mRNA_P-littoralis_Contig76.158.3 vs. uniprot
Match: A0A0P1AY76_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY76_PLAHL) HSP 1 Score: 70.9 bits (172), Expect = 1.240e-8 Identity = 103/397 (25.94%), Postives = 149/397 (37.53%), Query Frame = 1
Query: 112 RVPWSWAARSMVETVMRYPSGLTEAVILAELELLWRRDVRG-----ALVPGKLQAYLDAQYAP--LSD----VIQACVVRHSDQLVTLVEDHSRSVSCDQSPAKVGMYLHQNFKSC-------LRYAQEAGHDLLAPGRKVRLTGCRLLTGVAAAVSGSGRAGGGEGGRRSPGGGDGLSTLLLTEYLAFVLDHRRSDDIRLAAGAFGQTRVRDTF---NENSNHEAFFVVCKVLEIRRPRQHNTSSSGQQXXXXXXTLQTVVLECAARMXXXXXXXXXXXQGRWRPSGRVEAGANGGDGRCDSSGGRETVLLHL---WDEQTCLTSLFQKGDGLAVYWPWLAEQQQSGDSIHDDSVPLTGRGTSSQQNSLSSQLPLAGDASGWHFEYGSATALFVLP 1230
R+ + W ++ + YP GLTEA+I+ EL L+ R V G A K + D + L+D +QA V+ + D VTL D++ V MYLHQ F+SC L+Y RKV T ++L ++ R G TLL T YL L+ + D RL A + +V ++ + + KVL+I R T + V+L G V+ + G DS +T LHL WD+Q L+ LF GD LA++ P++ Q HD + SSQQ+ ++ EYGSAT LF P
Sbjct: 52 RISFYWVLSKLLRLIEEYPDGLTEAIIVTELTKLFERKVVGDTQQPAGTFTKKRKIRDEEDMGNLLTDGEQKALQAQVISYGDHRVTLALDYATDVIAH-------MYLHQRFRSCINFLNRELKYEPTRKTYPFQDARKVTFTHGKVLERKDVEMA-----------RGEYDGNQVKFTLLPTPYLIVQLNEKNPLDRRLLADSMSLNQVDQLICKAHDCLGIQQLMLKVKVLDIGAVRPCQTP---------LYVHRQVIL-----------------------FGEVDQLSIGVRSNMDS----KTQGLHLMVLWDDQVDLSRLFNIGDTLAIFHPFVHVCDQ-----HDTEIQYILTDYSSQQHL------------NYYLEYGSATVLFTSP 377
BLAST of mRNA_P-littoralis_Contig76.158.3 vs. uniprot
Match: A0A6A4Q7X9_LUPAL (Putative Cell division control protein 24, OB domain 2 n=2 Tax=Lupinus TaxID=3869 RepID=A0A6A4Q7X9_LUPAL) HSP 1 Score: 60.5 bits (145), Expect = 1.780e-5 Identity = 57/233 (24.46%), Postives = 92/233 (39.48%), Query Frame = 1
Query: 121 WSWAARSMVETVMRYPSGLTEAVILAELELLW-------------------RRDVRGALVPGK--LQAYLDAQYAPLSDVIQACVVRHSDQLVTLVED-HSRSVSCDQSPAKVGMYLHQNFKSCLRYAQEAGHDLLAPGRKVRLTGCRLLTGVAAAVSGSGRAGGGEGGRRSPGGGDGLSTLLLTEYLAFVLDHRRSDDIRLAAGAFGQTRVRDTFNENSNHEAFFVVCKVLE 753
WSW +++T Y SG+T A++LAEL W + + R +P + + + + L+ V++A ++ D V + H ++ S + +YLH+ F + + +L GR+V LTGC L T A GSG LL TEYL VLD + DD L F ++ N A++ + +E
Sbjct: 58 WSWIVSRILKTCTAYSSGVTPAILLAELAQAWCEQRRLGAPKKRLELINQMKENHRRTKLPNTVTIDSIYEKNFLSLNSVLEAVII---DAFVLPGTNIHMLTLGDYWSSNIIDLYLHRRFYG----SANLQNGILNKGREVLLTGCYLRT----AAEGSG-----------------YPRLLPTEYLVIVLDENQDDDAMLLGAQFFSDSFSSISLDSVNKGAYYSLYARIE 262
BLAST of mRNA_P-littoralis_Contig76.158.3 vs. uniprot
Match: UPI00106BFA99 (uncharacterized protein LOC114525665 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106BFA99) HSP 1 Score: 58.2 bits (139), Expect = 8.560e-5 Identity = 42/160 (26.25%), Postives = 75/160 (46.88%), Query Frame = 1
Query: 61 VVDGGATAAQRTGGQGLRVPWSWAARSMVETVMRYPSGLTEAVILAELELLWRR----DVRGALVPG-KLQAYLDAQYAPLSDVIQACV-----VRHSDQLVTLVEDHSRSVSCDQSPAKVGMYLHQNFKSCLRYAQEAGHDLLAPGRKVRLTGCRLLTG 510
+D + Q+ G +PW W +V + RYP+G+T+A++L+ELE WR+ +G + L++ + +++ V + + V + V ++ +H S + + MYLHQ Y + ++A G K+R TGCRL G
Sbjct: 5 TIDKLVSEFQQRLGTTTSIPWGWFFTKLVTLLSRYPTGVTKAIMLSELECSWRKIEKLQAKGGMNSADSLRSIVLSRHLSPQAVFEVFLKEVKNVEATQTRVAVLMEHETS---SEHSFTMEMYLHQKL-----YGEV--EQIMANGYKLRFTGCRLFDG 154 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.158.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig76.158.3 >prot_P-littoralis_Contig76.158.3 ID=prot_P-littoralis_Contig76.158.3|Name=mRNA_P-littoralis_Contig76.158.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=957bp MDWVQQHCDRLRSNLQHVVDGGATAAQRTGGQGLRVPWSWAARSMVETVMback to top mRNA from alignment at P-littoralis_Contig76:430382..441047- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig76.158.3 ID=mRNA_P-littoralis_Contig76.158.3|Name=mRNA_P-littoralis_Contig76.158.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=10666bp|location=Sequence derived from alignment at P-littoralis_Contig76:430382..441047- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig76:430382..441047- >mRNA_P-littoralis_Contig76.158.3 ID=mRNA_P-littoralis_Contig76.158.3|Name=mRNA_P-littoralis_Contig76.158.3|organism=Pylaiella littoralis U1_48|type=CDS|length=2871bp|location=Sequence derived from alignment at P-littoralis_Contig76:430382..441047- (Pylaiella littoralis U1_48)back to top |