mRNA_P-littoralis_Contig76.134.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.134.1
Unique NamemRNA_P-littoralis_Contig76.134.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:385593..385989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size398
Hectar predicted targeting categorysignal anchor
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791564.7887688-CDS-P-littoralis_Contig76:385592..3858921680791564.7887688-CDS-P-littoralis_Contig76:385592..385892Pylaiella littoralis U1_48CDSP-littoralis_Contig76 385593..385892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791564.799054-UTR-P-littoralis_Contig76:385892..3859891680791564.799054-UTR-P-littoralis_Contig76:385892..385989Pylaiella littoralis U1_48UTRP-littoralis_Contig76 385893..385989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.134.1prot_P-littoralis_Contig76.134.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 385593..385892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.134.1

>prot_P-littoralis_Contig76.134.1 ID=prot_P-littoralis_Contig76.134.1|Name=mRNA_P-littoralis_Contig76.134.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
RKINAWRGINPPPPPPTARYARERLVSAGEQNKLRVAEDFSGSTLVLCCV
SETTIFCSKTGLQFRRRSYRRCFSVLLAVFPIYLCFGGCLPLHVGINID*
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mRNA from alignment at P-littoralis_Contig76:385593..385989+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.134.1 ID=mRNA_P-littoralis_Contig76.134.1|Name=mRNA_P-littoralis_Contig76.134.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=397bp|location=Sequence derived from alignment at P-littoralis_Contig76:385593..385989+ (Pylaiella littoralis U1_48)
AGAAAAATCAACGCATGGCGTGGAATCAACCCTCCACCACCACCGCCCAC
CGCGCGCTACGCGAGAGAACGCCTAGTTTCTGCGGGTGAACAGAACAAAC
TTAGGGTTGCAGAAGATTTCTCGGGTTCAACCTTGGTGCTGTGTTGTGTA
TCGGAGACAACTATTTTTTGTAGTAAAACCGGACTCCAATTTCGCCGCCG
CAGCTACCGTCGCTGCTTCTCAGTGCTGCTGGCCGTGTTCCCTATCTATC
TATGCTTTGGCGGCTGCCTTCCTCTTCACGTTGGAATTAACATAGACTAG
TTGTTCGACCACTAGTACGAAAAAGAAGGGCAGACTCATCCCGCCTTCAC
ACGAATAAATTTGTTGCTGTCTGTTTCCCCACAGAGGTGCGGCATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig76:385593..385989+

>mRNA_P-littoralis_Contig76.134.1 ID=mRNA_P-littoralis_Contig76.134.1|Name=mRNA_P-littoralis_Contig76.134.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig76:385593..385989+ (Pylaiella littoralis U1_48)
AGAAAAATCAACGCATGGCGTGGAATCAACCCTCCACCACCACCGCCCAC
CGCGCGCTACGCGAGAGAACGCCTAGTTTCTGCGGGTGAACAGAACAAAC
TTAGGGTTGCAGAAGATTTCTCGGGTTCAACCTTGGTGCTGTGTTGTGTA
TCGGAGACAACTATTTTTTGTAGTAAAACCGGACTCCAATTTCGCCGCCG
CAGCTACCGTCGCTGCTTCTCAGTGCTGCTGGCCGTGTTCCCTATCTATC
TATGCTTTGGCGGCTGCCTTCCTCTTCACGTTGGAATTAACATAGACTAG
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