mRNA_P-littoralis_Contig76.132.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.132.1
Unique NamemRNA_P-littoralis_Contig76.132.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig76.132.1 vs. uniprot
Match: D7FQ77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ77_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.380e-70
Identity = 113/133 (84.96%), Postives = 123/133 (92.48%), Query Frame = 1 
Query:    1 QIKADAVGAEALARQGLEPLPFSPHRLATRALMYGTALSVGCFSAGVLVVGYSMGVTNLREFNDKMKVWAPEQMYRLGFRHRPEYVRDRRAIQGMTYDEEWEYIDKLLEKDERGLS---NAETPVAKSEGGPV 390
            QIKADAVGAEALA+QGLEPLPFSPHRLATRALMYGTALSVGCFSAGVLVVGYSMGVTNLREFNDKMKVWAPEQM+RLGFRHRPEY+RDR A++GMTYDEEWEY+D+LLEK+E G +   +AE P AKSEG  V
Sbjct:   59 QIKADAVGAEALAKQGLEPLPFSPHRLATRALMYGTALSVGCFSAGVLVVGYSMGVTNLREFNDKMKVWAPEQMHRLGFRHRPEYIRDREAMRGMTYDEEWEYVDRLLEKEEPGFAGADSAECPPAKSEGEVV 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ77_ECTSI1.380e-7084.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:381307..383749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size981
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007150.1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791568.992269-UTR-P-littoralis_Contig76:381306..3818911680791568.992269-UTR-P-littoralis_Contig76:381306..381891Pylaiella littoralis U1_48UTRP-littoralis_Contig76 381307..381891 -
1680791569.0411513-UTR-P-littoralis_Contig76:383653..3837491680791569.0411513-UTR-P-littoralis_Contig76:383653..383749Pylaiella littoralis U1_48UTRP-littoralis_Contig76 383654..383749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791569.003214-CDS-P-littoralis_Contig76:381891..3819871680791569.003214-CDS-P-littoralis_Contig76:381891..381987Pylaiella littoralis U1_48CDSP-littoralis_Contig76 381892..381987 -
1680791569.0174491-CDS-P-littoralis_Contig76:383067..3831931680791569.0174491-CDS-P-littoralis_Contig76:383067..383193Pylaiella littoralis U1_48CDSP-littoralis_Contig76 383068..383193 -
1680791569.028387-CDS-P-littoralis_Contig76:383575..3836531680791569.028387-CDS-P-littoralis_Contig76:383575..383653Pylaiella littoralis U1_48CDSP-littoralis_Contig76 383576..383653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.132.1prot_P-littoralis_Contig76.132.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 381892..383653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.132.1

>prot_P-littoralis_Contig76.132.1 ID=prot_P-littoralis_Contig76.132.1|Name=mRNA_P-littoralis_Contig76.132.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MYGTALSVGCFSAGVLVVGYSMGVTNLREFNDKMKVWAPEQMYRLGFRHR
PEYVRDRRAIQGMTYDEEWEYIDKLLEKDERGLSNAETPVAKSEGGPVG*
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mRNA from alignment at P-littoralis_Contig76:381307..383749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.132.1 ID=mRNA_P-littoralis_Contig76.132.1|Name=mRNA_P-littoralis_Contig76.132.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2443bp|location=Sequence derived from alignment at P-littoralis_Contig76:381307..383749- (Pylaiella littoralis U1_48)
CAGATAAAGGCCGACGCTGTCGGGGCTGAAGCTCTGGCGCGGCAGGGGCT
CGAGCCGCTGCCCTTCAGCCCGCACCGGCTCGCCACGCGGGCGCTCATGT
ACGGGACGGCGCTGTCTGTGGGTTGCTTCTCGGCGGGCGTCTTGGTCGTG
GGCTACTCCATGGGAGTGACAAACGTAAGTGCTTTCGGCTTCATCCATTC
ACTCTCCCTAGCTTTCATTCATCACGTGTCATTTTAAAAACTTGCCAGCA
GACCGGGTGCGGAATGTTGCGACTGCTTTTATCTTCATCTGTCCGAATAG
CGCCGTACATGTTATAGAATTTTACTAAACACTTGTAAAAAAAAACATAT
TCCCCACCCACGTATTTGGTGGAACTGCTGATTATCCATCTGTCATACAG
CAGTACGTGAAGCATTGTACAGGCAATCGTGTGATGCAAAGGAAAATCAG
AAAATCTCTTTAAAAAATAGAAAAAACAACACTGCAACATGTTTCTTTCC
TCTCTTTCTCTTTTGCATCGGTTCGGTTGGTTTCCCGTCTCGCATGACAC
ACGCAGCTCAGAGAGTTCAACGACAAGATGAAGGTCTGGGCGCCGGAGCA
GATGTACCGTCTTGGGTTTCGGCATCGTCCGGAATACGTCAGAGATAGAA
GGGCCATCCAGGGCATGACCTACGACGAGGAGGTAGGGCTGGAAAGCTGC
TGCATGCGGTATCAGCACCCTGTACACGTTTAGATCCACTGTCTGTACGT
GGTTCGTGTAGCTGCCCCATTTTTCGAATGCATTTTCACGATTTCATTCT
CCCTTTCAGACGCTTTTGTTGTTGTACGCTCTTCGCTCAGAGACATTGCA
TGATTCATAGGCAGCCCCCTCTAGGAGAACGCCTTGTTGCTGCGGACACT
AACTGTTCTGTCCATGCTCTCTTGTCAGAGCGCATGAAGCTCTCCTGTTA
GAGCGCACGCCATTCAACGAATGCTCGAAGGGCGAGTGAGGGACAAGACA
AATGCTATCGTTCACGATTCGGTAGTCGCGTGCGCAGAAAGGCTCATTCC
CCTACTACTACATATGATGGCATGGACTGCCGTCTTGAGAAACAAAATAA
GACCCACCGACCCCGTAGCTCGCGACCAGCGCTGTCTAGCGTCACCGCAG
ACATGGGAACAACACACTCTCGACCGCCTATGTGGCAAAGGTAGTCAAGA
TAAGAACGATACCAGTATTCAGAAGTGGGGCCAACCCACCAATCATCCGG
CTGATCGTCGTCCTTTCCTTGTGTGATCTTCCCCCTCCCACGCGGGTCGC
CCCGTTGTTCTAGTGGTTCCCTCGATAACCTACAAGTTGTAAGGTCGTAG
GTTTGATTCTCTCAGGGAGCGTTTTTTCGACTTTACCGTGGAAAGCGATT
TATTCGCGAGTAAACAGAGGGAAGGGATTGCTGAACCCGACTCGCATTAA
AAACCAATAGCAAGTGCCGCAGGAGGCAAGGCGTGGGCAATAAAACAAAA
TACAAACAAAAAAGCTCGTGTGTGACCTTCCTTCTGTGTGACCCCGGCTG
GTGCACCCATTTCATACCGAAAGGTGTAGACTGGTGCCCAGAATGGGATG
ACAACACACACCCACGTACTTTCTCCCGTGCGAAGCTGGCCGATCCTCCC
AACTTTTATCGAAAGGTGGAGACTCTCGTCCAGTGAATCAGGATGACGAC
ACAAATCACACGCTCACGGTGCCCTGCATTGCCCTCGGTTTGTTTCCTTC
CCCTTTCTGCAGTGGGAATACATCGACAAATTGTTGGAGAAAGACGAGCG
AGGGCTTAGCAACGCCGAGACTCCGGTGGCAAAGAGCGAAGGGGGACCTG
TCGGGTGACATCGGAGATACTGCTGGAGCCTTTTTTTGTGTGATGTCGAT
ACAAGCTGGAACCTCGTGAAGGAAGGTTGCCTTTTTGTTTTGGGCCGTGT
TTGTCCCGGTTTAACGGTTTCCTGTGTTTTGTTTTGTATCTGGGTGTGGT
TGGCGTACAAAAAAATGTAGAGTTGTGTATGAATAATACTCGAAGTAAAA
AAATAAAATGGTTACCGTAGTACAGGTTTGATGGAGCTTTATTCCGGACA
TCCTGAAAATCGTGCATCTCACATGAATGAAATCGACTTGTTATGAGAGA
GTTTCGAACGGGTTTCGTCGGCGGCGGTACTGGCGGGCCTACAGGTCTCA
TGCTGCCGGCTCCGGGTGTGGTCAGTGGTTTTACTGGTGGCCACTCTGTT
GGGACGACCTTGGTATGATTCGTGACCACGTTGCCCCCCGTACGTAACAG
ACAGCAGTTCACGAGGGAGGCATGTTTATGGAATCCAGAAAAATTTCGAA
AGGGATCCTTCACTTCGAGGTTGCGTCGCTGCTTATCACGCAAAACGTCG
AGTCAAACCCATCGATGCTGTCTGCGCGCCTTGGTCTGAAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig76:381307..383749-

>mRNA_P-littoralis_Contig76.132.1 ID=mRNA_P-littoralis_Contig76.132.1|Name=mRNA_P-littoralis_Contig76.132.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig76:381307..383749- (Pylaiella littoralis U1_48)
ATGTACGGGACGGCGCTGTCTGTGGGTTGCTTCTCGGCGGGCGTCTTGGT
CGTGGGCTACTCCATGGGAGTGACAAACCTCAGAGAGTTCAACGACAAGA
TGAAGGTCTGGGCGCCGGAGCAGATGTACCGTCTTGGGTTTCGGCATCGT
CCGGAATACGTCAGAGATAGAAGGGCCATCCAGGGCATGACCTACGACGA
GGAGTGGGAATACATCGACAAATTGTTGGAGAAAGACGAGCGAGGGCTTA
GCAACGCCGAGACTCCGGTGGCAAAGAGCGAAGGGGGACCTGTCGGGTGA
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