mRNA_P-littoralis_Contig76.111.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.111.2
Unique NamemRNA_P-littoralis_Contig76.111.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: D7G833_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G833_ECTSI)

HSP 1 Score: 433 bits (1114), Expect = 5.220e-139
Identity = 279/547 (51.01%), Postives = 342/547 (62.52%), Query Frame = 1 
Query:  148 MGSTTLSEPRRKRKRTARANASIRRTSSTAHKQPSIRRTGIICCFGAAVSLPCVAVLFGLTMTLITGVSKALKSSARDAAKAGRWD-----ASVHPLAVLLEEQHEIDSQAALFADPVGRCLSSALGDDEPPPERLGPFTCVADAKFFLRALAEALRFHSVVIVDMDSSNPSH--PSAPSRRPGGYAAGVGMGAAFAGLGSEILLE----QTRIKVGENPLPENADLVLIDAQEEALSADAWADLVRPLVQVLSENGVIVIRGPREEVGSTAGIKETKGVGEASSSWHGIAALWEAIAGEACNGGHGLAAAVGDLDGGIIVVRHAAAGEAGLET---GCGNSNAGQEPAAGGVT---ATVAPPQPLQFERLFLWATSEQDTTTDEAVGAVQTKFGGADAVRIYAQRRTGRSACVRA--AVGGGEAAAFFVEPLVREDGGSGGGHLRAKNRR-NHSHGGSAMASNDVASQRYFASCSCLESHLEAHTQDVRAGFALEMVLRAIGGRGADQKVARLRAKMGEESGSAGALLWRRLHARAGGAAAIGALL 1728
            MGS+ LSEPRRKRKRTARA AS R    TA K    R          A  LP +A +FGLTM ++  V    K  AR+ A+  R       A  HPLA+LLE QH+I SQAA FADP G CL  + G D+P  ERLG FTC+AD  FFLRALAE+LRF  +V+VD+ S +  H  P++P           G+GAA  GL SE+  E    Q ++  GE+PLP+NADL+LID  +E LSAD W DL R L++ LS++GVIVIRGPRE+V +T G    +G G    +W+G   LW+A+   AC+     AAAVG+LDGGIIV+RHAA GE  LET    CG ++ GQ+   GGV       APP PL+FERLFLW+T+  D TT  A+ AVQ  FGGA+ VR YA+RR  RS C+     V  GEA A+    L  E    GGGHLRA+ R   H     ++  +  A Q + A+ +CLE+HLE H QDVRAGFALEMVLRA GG G D++V RLR +M EESG AG LLWR LHARA G AA G LL
Sbjct:    1 MGSSLLSEPRRKRKRTARATASFRLNYGTAGKNEGTR---------CARCLPWIAGMFGLTMAVVVCVRNGFKDLAREKARDARLGRAEDHAKSHPLALLLEGQHDIGSQAARFADPDGHCLYPSPGADQPTAERLGVFTCLADTPFFLRALAESLRFRFLVVVDVGSVSLRHGLPASPP----------GLGAALTGLESEMFPEAPQLQAQVTAGEDPLPDNADLILIDVHKEVLSADDWVDLFRSLMRALSDDGVIVIRGPREQVDATTGAGRNEGAGSTIRAWYGSGHLWDAVTALACDQ-VAAAAAVGNLDGGIIVLRHAAPGEIDLETVKARCGRNHPGQQ--GGGVAKGAVAAAPPHPLRFERLFLWSTAPSDITTATAIEAVQAMFGGANEVRKYARRRYDRSVCLNTLNTVATGEAVAWSEASLETES--MGGGHLRAEPRHIRHK----SVPQSGAAPQWHSAARACLETHLEEHPQDVRAGFALEMVLRATGGSGVDRQVDRLRTRMTEESGPAGGLLWRALHARAAGVAATGLLL 519
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: A0A6H5LAT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT6_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 4.060e-83
Identity = 136/168 (80.95%), Postives = 150/168 (89.29%), Query Frame = -1 
Query: 2233 RSLVFGDIGSGCGRLVVAQALTWPWRACRGVEIVPSLYHIGEAALLAAAGRVADEGETNLSPAAVSLLKTMAPCSFSLGDVNEDVEISDIDVLFCYSSSFPAFGDLLTEFSYTLGQKLRPGAQVITTDRRLVSDGPWEFALIGEREGENAETGGKSIAYIWRVVKSAL 2736
            RSL+FGDIGSGCGRLVVAQALTWPW++CRGVEIVPSL+ +G+AAL  A  R+A   E  LSP    LL++MAPCS SLGDVN+DV+ISDIDVLFCYSSSFPAFGDLLTEFSYTLG KLRPGAQVITTDRRLVSDGPWEFAL+GEREG N+ETGGKSIAYIW VV+SAL
Sbjct:  136 RSLIFGDIGSGCGRLVVAQALTWPWKSCRGVEIVPSLHDMGQAALQEA-DRLAKGEENALSPETSRLLRSMAPCSLSLGDVNDDVDISDIDVLFCYSSSFPAFGDLLTEFSYTLGHKLRPGAQVITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 302
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: D7G834_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G834_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.130e-43
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = -1 
Query: 2233 EDVEISDIDVLFCYSSSFPAFGDLLTEFSYTLGQKLRPGAQVITTDRRLVSDGPWEFALIGEREGENAETGGKSIAYIWRVVKSAL 2490
            + V ISDIDVLFCYSSSFPAFGDLLTEFSYTLG KL+PGAQVITTDRRLVSDGPWEFAL+GEREG N+ETGGKSIAYIW VV+SAL
Sbjct:    2 QQVGISDIDVLFCYSSSFPAFGDLLTEFSYTLGHKLQPGAQVITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 87
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: A0A835Z2B1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.890e-31
Identity = 75/176 (42.61%), Postives = 97/176 (55.11%), Query Frame = -1 
Query: 2233 IGSGCGRLVVAQALTWPWRACRGVEIVPSLYHIGEAALLAAA-------GRVADEGETNLSPAAVSLLKTMAPCSFSLGDVNEDVE-------ISDIDVLFCYSSSFPAFGDLLTEFSYTLGQKLRPGAQVITTDRRLVSD-GPWEFALIGEREGENAETGGKSIAYIWRVVKSAL 2715
            + +G   +V+ QAL  PW+ C GVEIVP+L+ I  AAL  A                          L+ +APC+  LGD+             +  DV+FCY S++PA GDLLT  S+ L   LR GA V+TTDRRL S+ G WEFAL   REG NAETGG S+AYIW V ++ +
Sbjct:    5 VRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQNGV 180
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: D7FPV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPV7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 5.850e-29
Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = -1 
Query: 2482 RSLVFGDIGSGCGRLVVAQALTWPWRACRGVEIVPSLYHIGEAALLAAAGRVADEGETNLSPAAVSLLKTMAPCSFSLGDVNEDV 2736
            RSLVFGDIGSGCGRLVVAQALTWPW++CRGVEIVPSL+ +G+ AL  A  RVA   E  LSP  + LL++MAPCS SLGDVN+DV
Sbjct:   37 RSLVFGDIGSGCGRLVVAQALTWPWKSCRGVEIVPSLHDMGQVALQEA-DRVAKGDENTLSPETLRLLRSMAPCSLSLGDVNDDV 120
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: A0A7S0DXC4_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DXC4_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 8.390e-28
Identity = 73/166 (43.98%), Postives = 98/166 (59.04%), Query Frame = -1 
Query: 2236 DIGSGCGRLVVAQALTWP--WRACRGVEIVPSLYHIGEAALLAAAGRVADEGETNLSPAAVSLLKTMAPCSFSLGDVNE-DVEISDIDVLFCYSSSFPAFGDLLTEFSYTLGQKLRPGAQVITTDRRLVSDG--PWEFALIGEREGENAETGGKSIAYIWRVVKSA 2718
            D GSGCGRLVVA +  WP   RA  G+E V  L+ +G    +AA  ++  E +  L+                 GD ++   E+   DV+F YSS+F + GDLLT+FSY+ G +LR G +V+TTD+RL SD   PW+F L+   EG N ETGG SI Y+ RVV+SA
Sbjct:   26 DCGSGCGRLVVAASALWPELGRAV-GIEKVEPLHALG----MAAVAQLPAEQQARLT--------------LLCGDAHDLPEEMRQADVVFAYSSAFASQGDLLTDFSYSCGTRLREGTRVVTTDKRLASDDHTPWQFELLDTLEGPNLETGGSSIGYVQRVVRSA 172
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: A0A7S1HJW0_HEMAN (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HJW0_HEMAN)

HSP 1 Score: 122 bits (307), Expect = 4.650e-27
Identity = 72/166 (43.37%), Postives = 102/166 (61.45%), Query Frame = -1 
Query: 2239 VFGDIGSGCGRLVVAQALTWPW-RACRGVEIVPSLYHIGEAAL-LAAAGRVADEGETNLSPAAVSLLKTMAPCSFSLGDVNEDVEI-SDIDVLFCYSSSFPAFGDLLTEFSYTLGQKLRPGAQVITTDRRLVSDGPWEFALIGEREGENAETGGKSIAYIWRVVKS 2727
            VF D GSGCGRLV+  A+ +P  + CRG+EI   L+    +AL  A +G+   E E  L       LK        +G+  ED  +  D+D++FCYS++F + G +LT+ S  LG+ ++ GA+VIT D+ LVSDGPWEF  +G  EG N+E G  S+ Y++RVVKS
Sbjct:  144 VFCDFGSGCGRLVIYSAIAYPQLKECRGLEIQEVLHDAAVSALDEARSGKGTTEEEQRLLQGDRVRLK--------VGNAYEDPGLLQDVDLMFCYSTAFDSVGPMLTQLSACLGRNMKVGARVITVDKMLVSDGPWEFEEMGMLEGRNSELGS-SVGYLYRVVKS 300
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: L1JW98_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JW98_GUITC)

HSP 1 Score: 103 bits (257), Expect = 6.630e-23
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = -1 
Query: 2233 ISDIDVLFCYSSSFPAFGD-LLTEFSYTLGQKLRPGAQVITTDRRLVSDGPWEFALIGEREGENAETGGKSIAYIWRVVKSAL 2478
            ++DIDV FCYS++F  FG   L + SYTLG  L+PG++VIT D+ LVSDGPWEF L+   +G+N E GG S  YIW+VVKSA+
Sbjct:    1 LNDIDVCFCYSTAFSTFGGPYLAQLSYTLGHSLKPGSRVITVDKMLVSDGPWEFQLLHSIDGKNEEVGG-STGYIWKVVKSAV 82
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: A0A7S0Q107_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q107_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 8.720e-22
Identity = 68/171 (39.77%), Postives = 88/171 (51.46%), Query Frame = -1 
Query: 2239 FGDIGSGCGRLVVAQALTWPWRA-CRGVEIVPSLYHIGEAALLAAAGRVADEGETNLSPAAVSLLKTMAPCSFSLGDVNEDV------EISDIDVLFCYSSSFPAFGDLLTEFSYTLGQKLRPGAQVITTDRRLVSD--GPWEFALIGEREGENAETGGKSIAYIWRVVKS 2724
            F D+GSGCGRLV A A+  P  + C GVE V  L+ +             +   T+  PA         PC F  GD  E +       ++  D +F YSS+FP+ GD LT+ S      L  G ++ITTD+RL SD  G WEF L+ E +G NAETGG S  YIW V + 
Sbjct:   10 FVDVGSGCGRLVFAAAVLQPSLSRCVGVEKVAGLHDLA-----------CEAASTSPLPAG------SPPCEFLCGDAFEFLGTPPPYSLAAPDCIFIYSSAFPSAGDTLTDASLAFSM-LPAGTRIITTDKRLGSDEAGRWEFQLLKELDGPNAETGGTSTGYIWEVRRD 162
[Close]
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Match: A0A7S2V145_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V145_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.920e-21
Identity = 68/202 (33.66%), Postives = 103/202 (50.99%), Query Frame = -1 
Query: 2233 FGDIGSGCGRLVVAQALTWPWRACR------------GVEIVPSLYHIGEAAL-----LAAAGRVADEGETNL--------------SPAAVSLLKTMAPCSFSLGDVNE---DVEISDI----DVLFCYSSSFPAFGDLLTEFSYTLGQKLRPGAQVITTDRRLVSDGPWEFALIGEREGENAETGGKSIAYIWRVVKSAL 2724
            F D+GSGCGRLV+A  L +   + +            G+E+VP L+H+G   +     +       ++  T+L              SP  V   +  A   F    ++E   +V +  +     V+FCYSS+  +FGD L + S+ LG   + G  +ITTD++LVSDGPW+F L+   EG N ETGG S  YIW+V++S +
Sbjct:  186 FLDVGSGCGRLVLAAQLCFGHVSNQNSLKAGLLNEFVGIEVVPGLHHVGLKCMQYYQHMHEQKNNCEKANTHLKNNNITLICGDIYESPDTVITSENHASFEFQKRQLDEPRAEVTMGSVLSRAGVIFCYSSALASFGDELGQLSFALGTTAQVGTLIITTDKKLVSDGPWKFQLLETVEGPNEETGGMSTGYIWKVLQSGV 387
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.111.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G833_ECTSI5.220e-13951.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LAT6_9PHAE4.060e-8380.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G834_ECTSI1.130e-4388.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z2B1_9STRA1.890e-3142.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FPV7_ECTSI5.850e-2971.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0DXC4_9EUKA8.390e-2843.98Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S1HJW0_HEMAN4.650e-2743.37Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
L1JW98_GUITC6.630e-2357.83Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S0Q107_9EUKA8.720e-2239.77Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2V145_9STRA2.920e-2133.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:301058..306963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2736
Hectar predicted targeting categorysignal anchor
Exons7
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-00_010600.1
Cds size1584
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.111.2prot_P-littoralis_Contig76.111.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 301205..304270 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791568.0856383-UTR-P-littoralis_Contig76:301057..3012041680791568.0856383-UTR-P-littoralis_Contig76:301057..301204Pylaiella littoralis U1_48UTRP-littoralis_Contig76 301058..301204 +
1680791568.1606944-UTR-P-littoralis_Contig76:304270..3049041680791568.1606944-UTR-P-littoralis_Contig76:304270..304904Pylaiella littoralis U1_48UTRP-littoralis_Contig76 304271..304904 +
1680791568.1735046-UTR-P-littoralis_Contig76:305257..3053731680791568.1735046-UTR-P-littoralis_Contig76:305257..305373Pylaiella littoralis U1_48UTRP-littoralis_Contig76 305258..305373 +
1680791568.1834202-UTR-P-littoralis_Contig76:306708..3069631680791568.1834202-UTR-P-littoralis_Contig76:306708..306963Pylaiella littoralis U1_48UTRP-littoralis_Contig76 306709..306963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791568.0986822-CDS-P-littoralis_Contig76:301204..3015191680791568.0986822-CDS-P-littoralis_Contig76:301204..301519Pylaiella littoralis U1_48CDSP-littoralis_Contig76 301205..301519 +
1680791568.1143165-CDS-P-littoralis_Contig76:301982..3022671680791568.1143165-CDS-P-littoralis_Contig76:301982..302267Pylaiella littoralis U1_48CDSP-littoralis_Contig76 301983..302267 +
1680791568.1266472-CDS-P-littoralis_Contig76:302498..3026181680791568.1266472-CDS-P-littoralis_Contig76:302498..302618Pylaiella littoralis U1_48CDSP-littoralis_Contig76 302499..302618 +
1680791568.138344-CDS-P-littoralis_Contig76:303068..3032651680791568.138344-CDS-P-littoralis_Contig76:303068..303265Pylaiella littoralis U1_48CDSP-littoralis_Contig76 303069..303265 +
1680791568.1494393-CDS-P-littoralis_Contig76:303603..3042701680791568.1494393-CDS-P-littoralis_Contig76:303603..304270Pylaiella littoralis U1_48CDSP-littoralis_Contig76 303604..304270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.111.2

>prot_P-littoralis_Contig76.111.2 ID=prot_P-littoralis_Contig76.111.2|Name=mRNA_P-littoralis_Contig76.111.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=528bp
MGSTTLSEPRRKRKRTARANASIRRTSSTAHKQPSIRRTGIICCFGAAVS
LPCVAVLFGLTMTLITGVSKALKSSARDAAKAGRWDASVHPLAVLLEEQH
EIDSQAALFADPVGRCLSSALGDDEPPPERLGPFTCVADAKFFLRALAEA
LRFHSVVIVDMDSSNPSHPSAPSRRPGGYAAGVGMGAAFAGLGSEILLEQ
TRIKVGENPLPENADLVLIDAQEEALSADAWADLVRPLVQVLSENGVIVI
RGPREEVGSTAGIKETKGVGEASSSWHGIAALWEAIAGEACNGGHGLAAA
VGDLDGGIIVVRHAAAGEAGLETGCGNSNAGQEPAAGGVTATVAPPQPLQ
FERLFLWATSEQDTTTDEAVGAVQTKFGGADAVRIYAQRRTGRSACVRAA
VGGGEAAAFFVEPLVREDGGSGGGHLRAKNRRNHSHGGSAMASNDVASQR
YFASCSCLESHLEAHTQDVRAGFALEMVLRAIGGRGADQKVARLRAKMGE
ESGSAGALLWRRLHARAGGAAAIGALL*
back to top

mRNA from alignment at P-littoralis_Contig76:301058..306963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.111.2 ID=mRNA_P-littoralis_Contig76.111.2|Name=mRNA_P-littoralis_Contig76.111.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5906bp|location=Sequence derived from alignment at P-littoralis_Contig76:301058..306963+ (Pylaiella littoralis U1_48)
CCTGTCTGGGCTGGATCTATTAGACTAATCGATATTGAGCGGAGAGCCAA
ACAGCTTTATTGAGTTTGACGAACGAGAGACGGAGCTGACGACATTTTAC
AGGGAGCTGAAGTGTGCAGGGATGCTACTGCAGGGTGTGCTACCATCATG
GGCTCTACCACACTCTCGGAGCCGAGGAGGAAGAGGAAACGCACCGCAAG
AGCCAATGCCAGCATCAGACGTACCAGCAGCACCGCACACAAACAGCCCA
GCATCCGGCGTACTGGGATAATCTGTTGTTTCGGCGCAGCTGTTTCCCTG
CCTTGCGTTGCCGTGCTGTTCGGCCTCACGATGACCTTGATAACCGGTGT
CAGTAAAGCGCTGAAATCTTCGGCGAGGGATGCAGCGAAAGCAGGGAGGT
GGGACGCAAGCGTTCATCCTCTGGCCGTACTGCTCGAAGAGCAGCACGAG
ATTGACTCCCAGGTGCCGCTGCTGCTGCTGTCGAAACACACACGCCTGGT
CGTACAGCAGTATCAATCATACACATGTACACATGTCGCACATCGTGGCC
TTGAGATACCGCGCCCCATTCAACGATTTTGAATCATCAAAGCTCGATTG
CATTTCATTGCGACATTACCTTGTACTCTGCAGTAGAAAAGTTTAGGTGC
CGAGATGGGGTGACGTTAGAACCGTCTTCGTGGAGTCGTGGAGAGCTTTC
GGCCGTGGACGTCGTTTTCATGTTGGCAGTTGGGACCATTTTCGTCATGA
AGCAGACCATACTTGCATATATTCACACGGAAAATCTCACTTACTTTTTG
CACCGCTTTTGTTGGTGTTTTGTCAATTTTTTCCTCCCCCTTGCTGTGTG
AACGGTCAAAAACGCGGCTGCTGCCTTGATGCATAAAAAAAACGATGGAC
ATCAAATGTGGACGAGAATCTTCAGGCGGCTCTCTTTGCCGACCCCGTGG
GACGGTGCCTGTCCTCCGCGCTTGGCGACGATGAACCGCCGCCGGAGAGA
CTCGGCCCGTTCACCTGCGTCGCGGACGCGAAGTTCTTCCTACGCGCCCT
GGCGGAGGCGCTACGCTTCCATTCCGTGGTGATCGTTGACATGGACAGCA
GTAATCCGAGTCATCCCTCTGCCCCTTCCCGCCGTCCTGGTGGATACGCA
GCGGGTGTGGGCATGGGCGCGGCGTTCGCGGGACTTGGCTCAGAAATATT
GCTCGAGCAGGTAATTGAAGGATAGAAAGTAAGTGGTGCCTTGTAGGAAA
CAGCGGGTGTGTGTAATACAAGTATCTACCATGGAGCTCAGGCCGACGCA
CACACATTTTCTGGGGAAGGAGCTTGTAATCTTGGCATACGCTTCTCTCT
GGTGCGGCTAGAAACACCAATTTGCATATCCCCCCTAGAGGCCTGCAACG
CGCTTGACCGTGCCGATGGCTTTGTTGCACACACATTACAGACACGAATT
AAAGTCGGCGAGAATCCCCTGCCGGAGAACGCCGATCTAGTCCTGATCGA
CGCACAAGAGGAAGCCCTGTCCGCAGATGCGTGGGCGGACCTCGTACGCC
CCTTGGTGCAGGTACGGGCGCACGTTTTTTTGCCCGTGTCGAAATAAAAC
AACAACGGTCAGGGGTTGCATGCAGTTGGGAGTGGGAACGTCACGTGCAG
CCTATCGTACGAGGGAAGCACCCGGGCAGTCACTCAGCTTCTCATTCTTG
TGTGATGCCCGAACGAGCAAGGGTATACGTATTGCGTCATGAGCGCTCGC
ACCAATTGCACCTCCATCAGGTTACGGGTCCCCTCGGTGTGCTGCCATGG
TTCTCTCCTCGGTCGCTCCTGGCTGCTGTTGCGTCCTCAAACCAGGAGTG
ATTGGTAGGTGTATTCACGCTTCTCGTGTGACTTCAAGAGTTCTCTCTTG
TTTGTGTTAGCACCGCGCACACACATGGGTAGTGGTATTTCTTCTCCTGC
AAAACCGTGTAGACATGTGCACCCGTCTCCACCGGCAATACCGTATTCCC
TGCAACGACAGGTGCTTTCGGAGAACGGGGTGATTGTTATCCGTGGCCCG
CGGGAGGAGGTGGGATCAACCGCTGGTATCAAGGAAACGAAGGGGGTGGG
GGAAGCAAGCAGTAGCTGGCACGGAATCGCCGCTCTGTGGGAAGCGATAG
CGGGTGAAGCGTGCAACGGTGGACACGGCTTGGCTGCCGCCGTTGGCGAT
TTGGACGGGTGAGCCTTCCTATTGCGTACGCCGGAGTGGACCTGGATTTA
TTACCTGAAGTGTCCGTTGCTTCGAGGGTTCCAGCAGGAGCGCTACGCAT
CTTTCGAGAAACACGGTACTCTCGGTTTCCGTATCATCAAAATATTGATG
GCACTGAGTCTCGCCCTCAACTCCCGTGTGTATAGATGACGCACAATTTT
AGCCCTTTTCCGTCGTGGTGCAGGCACTCCCTCAATCTTCTACGCTCGAA
GCACGCACCGTCTATTTACCGGCTTCGGTTTCGCCCACGCCCCCCCTGAA
GGTTGTTCTTACCATAAAACCTTGTCCACGCACACCGATCTTGCAGGGGC
ATCATTGTGGTGCGACATGCGGCCGCTGGCGAAGCAGGTTTAGAGACGGG
ATGCGGCAACAGCAACGCAGGACAAGAACCGGCCGCAGGAGGAGTCACGG
CGACGGTTGCCCCGCCCCAACCACTGCAGTTTGAGAGGCTGTTCCTCTGG
GCGACAAGTGAACAGGATACCACAACGGACGAGGCAGTCGGGGCTGTCCA
GACCAAGTTTGGAGGGGCAGATGCGGTGCGCATTTATGCGCAGCGGCGAA
CGGGCCGATCAGCGTGCGTGAGAGCGGCCGTTGGTGGCGGCGAGGCTGCT
GCTTTTTTTGTCGAACCTTTGGTAAGAGAGGACGGTGGTAGTGGTGGCGG
CCATCTCCGCGCCAAAAATCGGCGGAATCACAGTCACGGCGGTAGTGCGA
TGGCGTCAAACGACGTGGCATCCCAGCGGTACTTCGCTTCGTGCTCGTGC
CTGGAGAGTCACTTGGAAGCACATACGCAAGACGTGCGAGCCGGTTTCGC
GCTCGAGATGGTGCTGAGGGCGATCGGGGGCAGAGGGGCCGATCAGAAGG
TGGCGCGCCTTCGAGCGAAAATGGGAGAAGAGAGCGGGTCGGCCGGGGCT
TTGCTCTGGAGAAGGCTTCACGCTCGGGCGGGTGGTGCGGCAGCGATTGG
GGCGCTTCTTTGAACTCAACACATACGATCACTTGAGAGGAAAACTTTCT
TGTTTGTTGGTGCCGTGCGAGGTTTCCCACCTGTCAATAGTTGAGTCAGC
GGCATCATACGTACATGTGTCGATCTCTCATGTATTCAGTTAAAAGTACA
ATTACGAGTGATAAGAGAGTAGGGCTCACGATGTCTTGTTTTGGTCTGAG
ATGTGCGGTAAACCACGCCATTCAGTCAACCGCAATCCACGATGATTTTT
GTGATGCACCCTTTTTTTTCAATTTATTACAAAAATGTGTTCGTCTCTCT
TCCAGACGAGGATCTGGAGTAGATTAACACAAAGAAAAGGATACACCTAC
CTGTATTTCTATGACTCATCACATAATGTACCGCCGTTGCACGACCTTCA
AAACCTCGCTTCATGGCTCACTTGACGGGGCAAAAGTTTCTGCGGCTTAC
AAGCGGCAGCTTCGTAGCATCGTCGTCTAGCTCATTACTCTCGTCACACC
GGTATTCATTGTCACAGCGCGGACTTGACAACGCGCCAGATATATGCGAT
GGACTTCCCTCCTGTCTCCGCATTCTCTCCCTCGCGTTCGCCTATCAACG
CAAACTCCCACGGCCCGTCGGAGACCAGGCGACGGTCCGTTGTGATGACC
TTTCATGTGCAATGTAGATGGAACAAAAAACGCACAAACCGAAAAGAGGA
AAGTTGGGACGGGCTGGCGATGGCACGTGGGCACGACTTGCCAACACATC
CCTTCAAAGCAACGATTGCGCCGAGTTGTGCGCACTCAGCTGCAGGGCGT
TCACAACACTTGGTCATGCAGTCTGTTCAAGCTGTTCAGACGAAGCACCC
TCTTCAGCTACCCGGACAGTACCACGGGATGTCATCACTTATTATTTAAG
CTGATTCCAACGCCGTATCATCTGCGTGTAGTTTTCGCCTCGTTCTCCGT
GGATGTGTGCAAATTACACATCGTGCAGAGTCCGCCCTGTGTGCGCCGTT
ACCTGAGCGCCCGGTCGAAGTTTTTGTCCGAGGGTGTAAGAAAATTCTGT
GAGAAGGTCACCGAAGGCCGGGAACGAACTGCTGTAGCAGAACAGGACGT
CGATGTCAGAAATTTCCACCTGAGTTTTTGAATCAGCAACGTTGTCACCT
GCAATGTAGCACCCTAAGTTCCTTCTGCCGAGTCCAAACATCGTGCAGGA
GCGCAAAACGAATCAAGAGGTGCGGCTGCTGTGGGAGCGGGAAACCCTAG
ATTTCATCGCGCCGCTCCGTACCGCAACGTTCTACCGCAGGCAGTACCTT
TTAAAACTACATGCAATCGTCGTGTTTCTGTCCAACGCTGCTTCAGGCTG
TCAAAGCTATCTTTCCGTTAAAAACGGAAGTGCTCCGGATCTCTCGCTTT
GTCTTTTCGATATTTTTCGGCGAAACGAAGCGTGAACTTGAGAAGGGTTG
AACCATTTCGGGCTTCGAACTTCACTTTTGGCAGGCAGCTGTTGATGGTT
CCGTTCTGTCTAGTTTGTGTCTCTCTTCCACGCAATCTTTTCTCACGTAG
ACCCTGGGAGGGAGCGGAAAGCGGATGCTTCGTAAGTATGCACGGACTTA
AAAAAAAAAAAATCAACGAGATAGAGGGACGGCGGAAGCCTTCTTGCGCT
TGAAACTGAGGCGAGAGCACCGCAGAGGAAAGGTGGAAGCAAAAAGAAAA
AAACTCCTGTTTTGACCTTCCTCTCATGTGACACCGGCTGGTAAGCCCAC
AAATACCGAAAGGTGTAGACTGGCGCCCAGAACAGGTGGGACGACATCAC
ACACTCACGCGTCTCTCTATCTACCTCCACTCAAACGTGTAGGTCGCATA
CAGCAGGAGTGCCCGCTTGCTTCCGCTGCTGCTCTTGTCTGAGAAAATTG
CGGCGGATTACGGACGGCTCATTATCGCGCTGCGAGTGGACAATGTATCA
TGTACGGACAGTCACACCTATTCTACATATTTGCACCTACTCGCACACAG
CTGAATTTACCGCTGAACGTTATTGCTTGCGGCTTTTGCTACTGCTACGG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCGCTCT
CTCTCTCTCTCTCTCATCGTACACGTTTCATATGATACCAGTCAAAAATT
ACACAGTGTCAACGACTGACCGACACGCCGCACACCACGAGCGCGCACAT
GGCCAACTACGTTTACAATAAAAGCCGAACAATACTCTATCATACCTCCC
GCCGACAATCCATTTTAGCCCATTTGCTTTGAATTTTCAGGAAATTTTCC
ATGCATCGACCCCTCGTGAGAAACAAAATACCTGCTGGAGTTTTTGTAGA
AAAGTTAGGCCGTATGATAGCTCTACGCGAGGTTTTATGGCTTTGTGCTT
AATTTGGAAGTCGTGTTGCGGTTTCAGAATTCCTGCGCTTCAAACTCAAC
TCACATCTTCGTTCACGTCTCCTAGCGAAAACGAGCAGGGCGCCATAGTT
TTCAGAAGGCTTACGGCTGCCGGAGAAAGGTTGGTTTCGCCTTCATCTGC
CACCCTACCCGCCGCGGCTAGCAGCGCCGCCTCTCCTATGTGGTATAAAG
AGGGCACAATCTCGACTCCGCGGCAGGCTCGCCATGGCCACGTCAGAGCT
TGCGCAACCACGAGACGTCCACAGCCGGAACCAATGTCCCCAAACACGAG
AGATCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig76:301058..306963+

>mRNA_P-littoralis_Contig76.111.2 ID=mRNA_P-littoralis_Contig76.111.2|Name=mRNA_P-littoralis_Contig76.111.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1584bp|location=Sequence derived from alignment at P-littoralis_Contig76:301058..306963+ (Pylaiella littoralis U1_48)
ATGGGCTCTACCACACTCTCGGAGCCGAGGAGGAAGAGGAAACGCACCGC
AAGAGCCAATGCCAGCATCAGACGTACCAGCAGCACCGCACACAAACAGC
CCAGCATCCGGCGTACTGGGATAATCTGTTGTTTCGGCGCAGCTGTTTCC
CTGCCTTGCGTTGCCGTGCTGTTCGGCCTCACGATGACCTTGATAACCGG
TGTCAGTAAAGCGCTGAAATCTTCGGCGAGGGATGCAGCGAAAGCAGGGA
GGTGGGACGCAAGCGTTCATCCTCTGGCCGTACTGCTCGAAGAGCAGCAC
GAGATTGACTCCCAGGCGGCTCTCTTTGCCGACCCCGTGGGACGGTGCCT
GTCCTCCGCGCTTGGCGACGATGAACCGCCGCCGGAGAGACTCGGCCCGT
TCACCTGCGTCGCGGACGCGAAGTTCTTCCTACGCGCCCTGGCGGAGGCG
CTACGCTTCCATTCCGTGGTGATCGTTGACATGGACAGCAGTAATCCGAG
TCATCCCTCTGCCCCTTCCCGCCGTCCTGGTGGATACGCAGCGGGTGTGG
GCATGGGCGCGGCGTTCGCGGGACTTGGCTCAGAAATATTGCTCGAGCAG
ACACGAATTAAAGTCGGCGAGAATCCCCTGCCGGAGAACGCCGATCTAGT
CCTGATCGACGCACAAGAGGAAGCCCTGTCCGCAGATGCGTGGGCGGACC
TCGTACGCCCCTTGGTGCAGGTGCTTTCGGAGAACGGGGTGATTGTTATC
CGTGGCCCGCGGGAGGAGGTGGGATCAACCGCTGGTATCAAGGAAACGAA
GGGGGTGGGGGAAGCAAGCAGTAGCTGGCACGGAATCGCCGCTCTGTGGG
AAGCGATAGCGGGTGAAGCGTGCAACGGTGGACACGGCTTGGCTGCCGCC
GTTGGCGATTTGGACGGGGGCATCATTGTGGTGCGACATGCGGCCGCTGG
CGAAGCAGGTTTAGAGACGGGATGCGGCAACAGCAACGCAGGACAAGAAC
CGGCCGCAGGAGGAGTCACGGCGACGGTTGCCCCGCCCCAACCACTGCAG
TTTGAGAGGCTGTTCCTCTGGGCGACAAGTGAACAGGATACCACAACGGA
CGAGGCAGTCGGGGCTGTCCAGACCAAGTTTGGAGGGGCAGATGCGGTGC
GCATTTATGCGCAGCGGCGAACGGGCCGATCAGCGTGCGTGAGAGCGGCC
GTTGGTGGCGGCGAGGCTGCTGCTTTTTTTGTCGAACCTTTGGTAAGAGA
GGACGGTGGTAGTGGTGGCGGCCATCTCCGCGCCAAAAATCGGCGGAATC
ACAGTCACGGCGGTAGTGCGATGGCGTCAAACGACGTGGCATCCCAGCGG
TACTTCGCTTCGTGCTCGTGCCTGGAGAGTCACTTGGAAGCACATACGCA
AGACGTGCGAGCCGGTTTCGCGCTCGAGATGGTGCTGAGGGCGATCGGGG
GCAGAGGGGCCGATCAGAAGGTGGCGCGCCTTCGAGCGAAAATGGGAGAA
GAGAGCGGGTCGGCCGGGGCTTTGCTCTGGAGAAGGCTTCACGCTCGGGC
GGGTGGTGCGGCAGCGATTGGGGCGCTTCTTTGA
back to top