mRNA_P-littoralis_Contig759.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig759.4.1
Unique NamemRNA_P-littoralis_Contig759.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: A0A6H5JJ00_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ00_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 6.190e-32
Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 1
Query:    1 LNVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFERGGSGI-----NSSHEPRIAFVDMEGQGDQSAEHDVRLATP 270
            L+++TILGAA+Q KSFLMNALT  D+ FRVSP+  PCTAGADLS I+M LSEF+RG +G      +SS +P I FVDMEGQGD+S E DVRLATP
Sbjct:   34 LSIVTILGAARQEKSFLMNALTRRDNGFRVSPEGYPCTAGADLSSILMPLSEFKRGSAGNTTHLPSSSPQPTIRFVDMEGQGDRSDERDVRLATP 128          
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: D8LML6_ECTSI (GBP1, guanylate-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML6_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.920e-31
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = 1
Query:    1 LNVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFERGGSGINSSH------EPRIAFVDMEGQGDQSAEHDVRLAT 267
            LN++TILGAA++GKSFLMNALTG DD+F VSP+V PCTAGAD+SP + SLS+FER G G  +SH      +P IAFVDMEGQGD+S EH VRLAT
Sbjct:  156 LNIVTILGAARRGKSFLMNALTGHDDLFPVSPNVAPCTAGADISPFLASLSDFERAG-GSQTSHIPPVTPKPTIAFVDMEGQGDKSNEHGVRLAT 249          
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: D8LML7_ECTSI (GBP2, guanylate-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML7_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.120e-30
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    1 LNVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFERGGSGI-----NSSHEPRIAFVDMEGQGDQSAEHDVRLATP 270
            L+V+TILGAA+QGKSFLMNALT SD+VFRVSP+V PCT G DL PI+M LSEF+RG +       +SS +P I FVDMEGQGD+S E DVRLATP
Sbjct:   34 LSVVTILGAARQGKSFLMNALTRSDNVFRVSPEVYPCTEGVDLFPILMPLSEFKRGSARNITHLPSSSPQPTIGFVDMEGQGDRSDERDVRLATP 128          
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: D7FYG1_ECTSI (GBP3, guanylate-binding proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG1_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 6.440e-28
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1
Query:    1 LNVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFERG-GSGINSS----HEPRIAFVDMEGQGDQSAEHDVRLATP 270
            LN++TI+G A++GKSFLMN LTG D +FR S +  PCTAGADLS I+MSL++F RG GS   +S     EP I FVDMEGQGD+S +HDVRLATP
Sbjct:   43 LNIVTIVGNARKGKSFLMNQLTGHDGMFRASANTEPCTAGADLSSIVMSLTDFRRGSGSSSKASGPSPSEPAIVFVDMEGQGDKSTDHDVRLATP 137          
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: A0A7S3URQ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URQ4_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 1.860e-20
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    1 LNVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFER-----GGSGINSSHEPRIAFVDMEGQGDQSAEHDVRLATP 270
            LN+++I GAA+QGKSFLMN L+G +++F++S +  PCT G D+S   +SL +F        G+ I++S   ++ FVD EGQGD+ AE+D RL +P
Sbjct:   29 LNLISIFGAARQGKSFLMNLLSGQENIFQISNNQDPCTQGIDISGNFVSLKDFASVDSPADGAAIDTSKGMQVGFVDAEGQGDRDAEYDARLVSP 123          
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: D8LC12_ECTSI (GBP5, guanylate-binding protein (Divergent) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC12_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.100e-18
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    4 NVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFER-----GGSGINSSHEPRIAFVDMEGQGDQSAEHDVRLAT 267
            NV+ I GAA+ GKSFLMN L G DD+F++S D  PCT G D+S  ++ L +F          G+++S++ R+ F D+EGQGD+ A +D RLA+
Sbjct:   22 NVVAIFGAARGGKSFLMNQLAGQDDIFKISNDKDPCTQGVDVSRAVVPLKDFATLDGCTAPRGVSTSNQVRVLFADVEGQGDRDAAYDARLAS 114          
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: A0A067BQ42_SAPPC (GBP domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQ42_SAPPC)

HSP 1 Score: 88.2 bits (217), Expect = 2.060e-18
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 LNVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFERGGSGINSSHEPRIAFVDMEGQGDQSAEHDVRLATP 270
            +N+++I GAA+QGKSFLMN L    D+FR+S +  PCT G DLS   M L+EF R     +     ++ FVD EGQGD+   +D RL +P
Sbjct:   38 INLISIFGAARQGKSFLMNLLANQQDLFRISNEKEPCTQGVDLSSHFMPLAEFSRQNGNTSIPSSMKVGFVDAEGQGDRDITYDSRLVSP 127          
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: A0A3R6YGE9_9STRA (GBP domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YGE9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.440e-17
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    4 NVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFER-GGSGINSSHEPRIAFVDMEGQGDQSAEHDVRLATP 270
            N+++I GAA+QGKSFLMN L    D+FR+S +  PCT G DLS   M L  F R  G    SS    I FVD EGQGD+   +D RL +P
Sbjct:   36 NLISIFGAARQGKSFLMNLLANQQDLFRISNEKEPCTQGVDLSSHFMPLESFSRINGCPPVSSPNMSIGFVDAEGQGDRDITYDSRLVSP 125          
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: A0A3R7B7X5_9STRA (Protein geranylgeranyltransferase type II n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B7X5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.700e-17
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    4 NVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFER-GGSGINSSHEPRIAFVDMEGQGDQSAEHDVRLATP 270
            N+++I GAA+QGKSFLMN L    D+FR+S +  PCT G DLS   M L  F R  G    SS    I FVD EGQGD+   +D RL +P
Sbjct:   36 NLISIFGAARQGKSFLMNLLANQQDLFRISNEKEPCTQGVDLSSHFMPLESFSRINGCPPVSSPNMSIGFVDAEGQGDRDITYDSRLVSP 125          
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Match: A0A418FZ26_9STRA (GBP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FZ26_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.110e-16
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    4 NVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSLSEFER-GGSGINSSHEPRIAFVDMEGQGDQSAEHDVRLATP 270
            N+++I GAA+QGKSFLMN L    D+FR+S +  PCT G DLS   M L  F R  G    SS    I FVD EGQGD+   +D RL +P
Sbjct:   36 NLISIFGAARQGKSFLMNLLANQQDLFRISNEKEPCTQGVDLSSHFMPLEAFSRINGCPPVSSPNMSIGFVDAEGQGDRDITYDSRLVSP 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig759.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ00_9PHAE6.190e-3266.32GBP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LML6_ECTSI2.920e-3168.42GBP1, guanylate-binding protein n=1 Tax=Ectocarpus... [more]
D8LML7_ECTSI1.120e-3068.42GBP2, guanylate-binding protein n=1 Tax=Ectocarpus... [more]
D7FYG1_ECTSI6.440e-2863.16GBP3, guanylate-binding proteins n=1 Tax=Ectocarpu... [more]
A0A7S3URQ4_HETAK1.860e-2046.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8LC12_ECTSI1.100e-1846.24GBP5, guanylate-binding protein (Divergent) n=1 Ta... [more]
A0A067BQ42_SAPPC2.060e-1846.67GBP domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A3R6YGE9_9STRA1.440e-1750.00GBP domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A3R7B7X5_9STRA8.700e-1750.00Protein geranylgeranyltransferase type II n=1 Tax=... [more]
A0A418FZ26_9STRA1.110e-1650.00GBP domain-containing protein (Fragment) n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig759contigP-littoralis_Contig759:43174..43443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LML6
Model size270
Max annot lvl2880.D8LML6|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.78e-32
EggNOG OGsKOG2037@1|root,KOG2037@2759|Eukaryota
DescriptionGTPase activity
Cds size270
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791564.0135703-CDS-P-littoralis_Contig759:43173..434431680791564.0135703-CDS-P-littoralis_Contig759:43173..43443Pylaiella littoralis U1_48CDSP-littoralis_Contig759 43174..43443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig759.4.1prot_P-littoralis_Contig759.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig759 43174..43443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig759.4.1

>prot_P-littoralis_Contig759.4.1 ID=prot_P-littoralis_Contig759.4.1|Name=mRNA_P-littoralis_Contig759.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
LNVLTILGAAKQGKSFLMNALTGSDDVFRVSPDVVPCTAGADLSPIIMSL
SEFERGGSGINSSHEPRIAFVDMEGQGDQSAEHDVRLATP
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mRNA from alignment at P-littoralis_Contig759:43174..43443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig759.4.1 ID=mRNA_P-littoralis_Contig759.4.1|Name=mRNA_P-littoralis_Contig759.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig759:43174..43443- (Pylaiella littoralis U1_48)
CTGAATGTGCTCACGATTCTAGGAGCCGCCAAGCAAGGCAAGTCCTTTCT CATGAACGCGCTGACAGGGTCGGACGATGTTTTTCGTGTATCGCCGGATG TTGTGCCGTGCACCGCGGGGGCCGATCTGTCTCCGATCATCATGTCTCTT TCTGAGTTCGAGCGAGGAGGCAGCGGGATCAATAGCTCACATGAACCCAG GATCGCGTTCGTGGATATGGAGGGTCAAGGCGACCAGTCTGCCGAACATG ATGTGCGCCTGGCGACGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig759:43174..43443-

>mRNA_P-littoralis_Contig759.4.1 ID=mRNA_P-littoralis_Contig759.4.1|Name=mRNA_P-littoralis_Contig759.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig759:43174..43443- (Pylaiella littoralis U1_48)
CTGAATGTGCTCACGATTCTAGGAGCCGCCAAGCAAGGCAAGTCCTTTCT
CATGAACGCGCTGACAGGGTCGGACGATGTTTTTCGTGTATCGCCGGATG
TTGTGCCGTGCACCGCGGGGGCCGATCTGTCTCCGATCATCATGTCTCTT
TCTGAGTTCGAGCGAGGAGGCAGCGGGATCAATAGCTCACATGAACCCAG
GATCGCGTTCGTGGATATGGAGGGTCAAGGCGACCAGTCTGCCGAACATG
ATGTGCGCCTGGCGACGCCC
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