mRNA_P-littoralis_Contig759.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig759.3.1
Unique NamemRNA_P-littoralis_Contig759.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: D8LML7_ECTSI (GBP2, guanylate-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML7_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.520e-38
Identity = 74/106 (69.81%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPHP 318
            +VVIFNWLGLPNKSTIL+RLVVMIKA +KV  ++++GEP FGHL+L+MRDVK KAAEIEAL+MDDED   L  ED++ + ERN IRK LR  FKS +VHTM+RPHP
Sbjct:  134 KVVIFNWLGLPNKSTILERLVVMIKAAEKVSRRKNKGEPMFGHLILVMRDVKQKAAEIEALIMDDEDG-GLTHEDAEGVTERNLIRKRLRAVFKSTVVHTMHRPHP 238          
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: D8LML6_ECTSI (GBP1, guanylate-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML6_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.510e-28
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPH 315
            +VVI+NW+ LPNK+T+LQ L+VM+KA +KVV  + + E AFGHL++L+RDV G+AAE EA VM  ED E L+FE +KD  ERN IR  L+ AF+SI  HTM  PH
Sbjct:  256 KVVIYNWMFLPNKTTMLQDLLVMVKAAEKVVNGEGKREHAFGHLIILLRDVTGRAAETEAFVMGIEDTEDLSFEAAKDGAERNLIRTTLKKAFESITFHTMPSPH 360          
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: A0A6H5JJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.080e-26
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    4 VVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGL 267
            VV+FNWLGLPNKSTILQRL+VMIKA +KV  ++ + EP FGHL+L+MRDVK KAAEIEALV+DDED   L  ED++ + ERN IRK L
Sbjct:    3 VVLFNWLGLPNKSTILQRLLVMIKAAEKVSRRKTKDEPIFGHLILVMRDVKQKAAEIEALVIDDEDG-GLTHEDAEGVTERNLIRKRL 89          
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: D7FYG2_ECTSI (GBP4, guanylate-binding proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG2_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.700e-20
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEG----EPAFGHLVLLMRDVKG--KAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPHP 318
            +V+IFNWLG PNK+T+L++L VM+ A  K+  Q  +G    E  FGHL++L RD+ G  KA EI  L+++DED      +D K    RN IR GLR +F+SI+V T+  PHP
Sbjct:  145 KVIIFNWLGRPNKTTMLEKLEVMVLATDKIKQQDGDGGCFHEKVFGHLIILARDLSGPEKAEEIRELLLNDEDAGP--SKDRKGATNRNTIRAGLRNSFESIVVRTLPVPHP 254          
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: A0A6H5JVK0_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.030e-10
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKG---KAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPH 315
            +VVI+NW GLPN++T L +L  M  A   +    +E E +FGHL++L+RDV     ++A       +DE V +    D+  + ERN  RK L+ +F+SI V  + RPH
Sbjct:  144 KVVIYNWQGLPNRATTLDKLSAMTYAASLL--SPEEREDSFGHLIILLRDVTSMQEQSAYDRIFEQEDETVRNTKAGDA--LKERNEKRKLLQQSFQSIRVCCLPRPH 247          
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: A0A836CFB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFB5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.400e-8
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAEIEALVMDDEDVESLNFEDSKDILE-RNRIRKGLRTAFKSIIVHTM 303
            +VVIFNWLG+PNK+T+L  L  +++A   VV + D  +  FG L++++RD      +   L+  +ED  +   +  +D    RN  R  L  AF S+ VH +
Sbjct:   24 RVVIFNWLGMPNKTTMLNHLA-LLQASAAVVNRSDR-DGVFGDLIVVLRDCIAPREDCYELIFGNEDAGAARRDADEDSARARNATRAALLRAFASVAVHCL 123          
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: A0A836CEI3_9STRA (GBP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.200e-7
Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    4 VVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAE-------IEAL----------VMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPHP 318
            VV+FNWLG+PNK T++ +L +M KA   +V + +  + AFGHLV+++RD      E       +EA           V+  ED ++   E +  + +RN  R+ L+ AF S  + T+  PHP
Sbjct:  174 VVLFNWLGMPNKDTMVNQLALM-KAAADIVDRSNR-KNAFGHLVVVLRDCTSSRHECFDIIFGMEASGCVYLPLPDSVISPEDADTDKAEAA--MRDRNCAREALKRAFTSTALFTLPVPHP 291          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LML7_ECTSI2.520e-3869.81GBP2, guanylate-binding protein n=1 Tax=Ectocarpus... [more]
D8LML6_ECTSI1.510e-2858.10GBP1, guanylate-binding protein n=1 Tax=Ectocarpus... [more]
A0A6H5JJR4_9PHAE1.080e-2668.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYG2_ECTSI4.700e-2047.32GBP4, guanylate-binding proteins n=1 Tax=Ectocarpu... [more]
A0A6H5JVK0_9PHAE9.030e-1038.89GBP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CFB5_9STRA9.400e-835.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEI3_9STRA6.200e-734.43GBP domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig759contigP-littoralis_Contig759:34768..35086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LML7
Model size319
Max annot lvl2880.D8LML7|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.12e-39
EggNOG OGsKOG2037@1|root,KOG2037@2759|Eukaryota
DescriptionGTPase activity
Cds size318
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791563.9815147-CDS-P-littoralis_Contig759:34768..350861680791563.9815147-CDS-P-littoralis_Contig759:34768..35086Pylaiella littoralis U1_48CDSP-littoralis_Contig759 34769..35086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig759.3.1prot_P-littoralis_Contig759.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig759 34769..35086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig759.3.1

>prot_P-littoralis_Contig759.3.1 ID=prot_P-littoralis_Contig759.3.1|Name=mRNA_P-littoralis_Contig759.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRD
VKGKAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHT
MNRPHP
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mRNA from alignment at P-littoralis_Contig759:34768..35086-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig759.3.1 ID=mRNA_P-littoralis_Contig759.3.1|Name=mRNA_P-littoralis_Contig759.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=319bp|location=Sequence derived from alignment at P-littoralis_Contig759:34768..35086- (Pylaiella littoralis U1_48)
CAGGTCGTCATCTTTAACTGGCTAGGCTTGCCCAATAAGAGCACTATCCT GCAACGGCTGGTGGTGATGATCAAAGCCGGGAAGAAGGTGGTTGGTCAAC AAGATGAGGGAGAGCCTGCGTTCGGCCACCTTGTCCTCCTCATGCGCGAC GTGAAAGGGAAAGCTGCAGAGATCGAGGCCCTCGTCATGGACGACGAGGA CGTGGAGAGTCTCAACTTCGAGGATTCCAAAGACATCCTCGAGCGAAACA GGATCCGAAAGGGATTGAGGACGGCCTTCAAAAGCATCATCGTTCACACC ATGAACCGTCCCCACCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig759:34768..35086-

>mRNA_P-littoralis_Contig759.3.1 ID=mRNA_P-littoralis_Contig759.3.1|Name=mRNA_P-littoralis_Contig759.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig759:34768..35086- (Pylaiella littoralis U1_48)
CAGGTCGTCATCTTTAACTGGCTAGGCTTGCCCAATAAGAGCACTATCCT
GCAACGGCTGGTGGTGATGATCAAAGCCGGGAAGAAGGTGGTTGGTCAAC
AAGATGAGGGAGAGCCTGCGTTCGGCCACCTTGTCCTCCTCATGCGCGAC
GTGAAAGGGAAAGCTGCAGAGATCGAGGCCCTCGTCATGGACGACGAGGA
CGTGGAGAGTCTCAACTTCGAGGATTCCAAAGACATCCTCGAGCGAAACA
GGATCCGAAAGGGATTGAGGACGGCCTTCAAAAGCATCATCGTTCACACC
ATGAACCGTCCCCACCCG
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