mRNA_P-littoralis_Contig759.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: D8LML7_ECTSI (GBP2, guanylate-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML7_ECTSI) HSP 1 Score: 144 bits (364), Expect = 2.520e-38 Identity = 74/106 (69.81%), Postives = 89/106 (83.96%), Query Frame = 1
Query: 1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPHP 318
+VVIFNWLGLPNKSTIL+RLVVMIKA +KV ++++GEP FGHL+L+MRDVK KAAEIEAL+MDDED L ED++ + ERN IRK LR FKS +VHTM+RPHP
Sbjct: 134 KVVIFNWLGLPNKSTILERLVVMIKAAEKVSRRKNKGEPMFGHLILVMRDVKQKAAEIEALIMDDEDG-GLTHEDAEGVTERNLIRKRLRAVFKSTVVHTMHRPHP 238
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: D8LML6_ECTSI (GBP1, guanylate-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML6_ECTSI) HSP 1 Score: 117 bits (294), Expect = 1.510e-28 Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query: 1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPH 315
+VVI+NW+ LPNK+T+LQ L+VM+KA +KVV + + E AFGHL++L+RDV G+AAE EA VM ED E L+FE +KD ERN IR L+ AF+SI HTM PH
Sbjct: 256 KVVIYNWMFLPNKTTMLQDLLVMVKAAEKVVNGEGKREHAFGHLIILLRDVTGRAAETEAFVMGIEDTEDLSFEAAKDGAERNLIRTTLKKAFESITFHTMPSPH 360
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: A0A6H5JJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR4_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.080e-26 Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 1
Query: 4 VVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGL 267
VV+FNWLGLPNKSTILQRL+VMIKA +KV ++ + EP FGHL+L+MRDVK KAAEIEALV+DDED L ED++ + ERN IRK L
Sbjct: 3 VVLFNWLGLPNKSTILQRLLVMIKAAEKVSRRKTKDEPIFGHLILVMRDVKQKAAEIEALVIDDEDG-GLTHEDAEGVTERNLIRKRL 89
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: D7FYG2_ECTSI (GBP4, guanylate-binding proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG2_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 4.700e-20 Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEG----EPAFGHLVLLMRDVKG--KAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPHP 318
+V+IFNWLG PNK+T+L++L VM+ A K+ Q +G E FGHL++L RD+ G KA EI L+++DED +D K RN IR GLR +F+SI+V T+ PHP
Sbjct: 145 KVIIFNWLGRPNKTTMLEKLEVMVLATDKIKQQDGDGGCFHEKVFGHLIILARDLSGPEKAEEIRELLLNDEDAGP--SKDRKGATNRNTIRAGLRNSFESIVVRTLPVPHP 254
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: A0A6H5JVK0_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK0_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 9.030e-10 Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKG---KAAEIEALVMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPH 315
+VVI+NW GLPN++T L +L M A + +E E +FGHL++L+RDV ++A +DE V + D+ + ERN RK L+ +F+SI V + RPH
Sbjct: 144 KVVIYNWQGLPNRATTLDKLSAMTYAASLL--SPEEREDSFGHLIILLRDVTSMQEQSAYDRIFEQEDETVRNTKAGDA--LKERNEKRKLLQQSFQSIRVCCLPRPH 247
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: A0A836CFB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFB5_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 9.400e-8 Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1
Query: 1 QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAEIEALVMDDEDVESLNFEDSKDILE-RNRIRKGLRTAFKSIIVHTM 303
+VVIFNWLG+PNK+T+L L +++A VV + D + FG L++++RD + L+ +ED + + +D RN R L AF S+ VH +
Sbjct: 24 RVVIFNWLGMPNKTTMLNHLA-LLQASAAVVNRSDR-DGVFGDLIVVLRDCIAPREDCYELIFGNEDAGAARRDADEDSARARNATRAALLRAFASVAVHCL 123
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Match: A0A836CEI3_9STRA (GBP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI3_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 6.200e-7 Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 1
Query: 4 VVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDVKGKAAE-------IEAL----------VMDDEDVESLNFEDSKDILERNRIRKGLRTAFKSIIVHTMNRPHP 318
VV+FNWLG+PNK T++ +L +M KA +V + + + AFGHLV+++RD E +EA V+ ED ++ E + + +RN R+ L+ AF S + T+ PHP
Sbjct: 174 VVLFNWLGMPNKDTMVNQLALM-KAAADIVDRSNR-KNAFGHLVVVLRDCTSSRHECFDIIFGMEASGCVYLPLPDSVISPEDADTDKAEAA--MRDRNCAREALKRAFTSTALFTLPVPHP 291 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig759.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig759.3.1 >prot_P-littoralis_Contig759.3.1 ID=prot_P-littoralis_Contig759.3.1|Name=mRNA_P-littoralis_Contig759.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp QVVIFNWLGLPNKSTILQRLVVMIKAGKKVVGQQDEGEPAFGHLVLLMRDback to top mRNA from alignment at P-littoralis_Contig759:34768..35086- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig759.3.1 ID=mRNA_P-littoralis_Contig759.3.1|Name=mRNA_P-littoralis_Contig759.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=319bp|location=Sequence derived from alignment at P-littoralis_Contig759:34768..35086- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig759:34768..35086- >mRNA_P-littoralis_Contig759.3.1 ID=mRNA_P-littoralis_Contig759.3.1|Name=mRNA_P-littoralis_Contig759.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig759:34768..35086- (Pylaiella littoralis U1_48)back to top |