mRNA_P-littoralis_Contig757.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig757.14.1
Unique NamemRNA_P-littoralis_Contig757.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig757.14.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 6.710e-41
Identity = 72/143 (50.35%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   31 MMAHLDVGGLVLDCCGSTRNAVCRLLTERGFRVQTNDINSRQARQT-IACTKYAY----GQGDNRPDWVVTSPPYKNAFAILKQALHVAHVGVVFKLRLSFLEPSKTRGQWLKDNPHSLTIVLPRAGYRGRKCNVPQAWFMWY 444
            ++ ++ + G VLD CGS  +A+  +L      V TND N R    T +  T   +         RPDW+VTSPPY NAF+IL +AL V  VGV FKLRLSFLEP+KTRG+WLKDNP S  +VLPRA Y GR C+  +AWF+W+
Sbjct:   18 LLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160          
BLAST of mRNA_P-littoralis_Contig757.14.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.500e-16
Identity = 47/130 (36.15%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   31 MMAHLDVGGLVLDCCGSTRNAVCRLLTERGFRVQTNDINSR------------QARQTIACTKYAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAHVGVVFKLRLSFLEPSKTRGQWLKDNPHSLTIVL 384
            ++  +++ G VLD CG   +A+   L     +V TNDI++R             A        +   +   RPDWV+TSPPYK A   +K AL +A  GV  KL LSFLEP   RG WL+ NP ++ +  
Sbjct:   93 LLGAVELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221          
BLAST of mRNA_P-littoralis_Contig757.14.1 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR)

HSP 1 Score: 72.4 bits (176), Expect = 9.110e-13
Identity = 50/156 (32.05%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    7 HPLRQVIDMMAHLDVGGLVLDCCGSTRNAVCRLLTERGFRVQTNDIN--SRQARQTIACTK---YAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAHVGVVFKLRLSFLEPSKTRGQWLKDNPHSLTIVL----PRAGYRG--RKCNVPQAWFMW 441
            H L +V+D    +D G  +L+ C    + +  +L      V  +DI+      + T   T+   + Y +   R +WV+T+PP+  A AIL  A   A VGV F LRLS+LEP+K RG W  ++  +++ ++    PR  + G  R  +V  AW +W
Sbjct:   26 HKLLEVVD----IDPGVTILEPCAGEGD-ILNVLQYYNVGVVASDISWQPHPGQTTTDATERLFWHYWKNRLRFEWVITNPPFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVW 176          
BLAST of mRNA_P-littoralis_Contig757.14.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.350e-8
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = -2
Query:  207 FNHCPRVLEGSRNDSLSLKTTPT*ATCSACFRMAKAFLYGGLVTTQSGR 353
             +HCP VL GSR  SLSL  TPT     A F++AKA LYGGLVTT SGR
Sbjct:  171 LSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGR 219          
BLAST of mRNA_P-littoralis_Contig757.14.1 vs. uniprot
Match: A0A2W4YX34_9CYAN (Uncharacterized protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4YX34_9CYAN)

HSP 1 Score: 57.0 bits (136), Expect = 5.200e-7
Identity = 41/156 (26.28%), Postives = 67/156 (42.95%), Query Frame = 1
Query:   31 MMAHLDVGGLVLDCCGS---------TRNAVCRLLTERGFRVQTNDINSRQARQTIACTKYAYGQGDNRP-DWVVTSPPYKNAFAILKQALHVAHVGVVFKLRLSFLEPSKTRGQWLKDNPHSLTIVL---PRAGYRG---RKCNVPQAWFMWYTG 450
            ++  + + G V +CC             ++  RL+ +      + +   R A +      +A  +    P DW VT+PP+  A  IL  A   +  G  F LRLS+LEP+  R  WL +    L  ++   PR  +R    +  +V  AW +W  G
Sbjct:   37 LLNRVPITGTVFECCAGHGAISDILELTDSTERLVLQSDLSWPSPNGELRDATEQRFWESWATLEAGGSPIDWTVTNPPFCEAEQILPLAWEYSRQGCAFLLRLSYLEPTAGRADWLNEMADHLRYLITLNPRPKFRRDTKKTDSVTAAWLVWEKG 192          
BLAST of mRNA_P-littoralis_Contig757.14.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.550e-5
Identity = 37/118 (31.36%), Postives = 51/118 (43.22%), Query Frame = 1
Query:   31 MMAHLDVGGLVLDCCGSTRNAVCRLLTERGFRVQTNDINSRQARQTIACTKYAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAHVGVVFKLRLSFLEPSKTR------GQWLKDNPH 366
            + A + + G VLD CG   +AV +     GF     +++   A       ++       +PDWVVTSPPYK +   +  AL VA  GV  KL L    P  T       G W  D  +
Sbjct:   58 LRAAVAITGCVLDMCGGPEDAVAQ-----GFGGTCTNLD---ASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPVPTGEVGEFWGVWYTDGSY 167          
BLAST of mRNA_P-littoralis_Contig757.14.1 vs. uniprot
Match: K7QKA5_9CAUD (Uncharacterized protein n=17 Tax=Phapecoctavirus TaxID=2733124 RepID=K7QKA5_9CAUD)

HSP 1 Score: 50.4 bits (119), Expect = 8.120e-5
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  202 DNRPDWVVTSPPYKNAFAILKQALHVAHVGVVFKLRLSFLEPSKTRGQWLKDNPHSLTIVLPRAGY-RGRKCNVPQAWFMW 441
            +NRPD ++T+PP+K A   L+++L  A V  ++ LRL FLE  K R    K+ P +L ++  R  +  G       AW+++
Sbjct:   75 ENRPDIIITNPPFKLAMEFLEKSLKEADV-CIYLLRLGFLESKKRREFHQKNPPTNLIVLSERPSFVAGGTDKTAYAWYVY 154          
BLAST of mRNA_P-littoralis_Contig757.14.1 vs. uniprot
Match: UPI001FF64C0F (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001FF64C0F)

HSP 1 Score: 50.4 bits (119), Expect = 8.120e-5
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  202 DNRPDWVVTSPPYKNAFAILKQALHVAHVGVVFKLRLSFLEPSKTRGQWLKDNPHSLTIVLPRAGY-RGRKCNVPQAWFMW 441
            +NRPD ++T+PP+K A   L+++L  A V V + LRL FLE  K R    ++ P +L ++  R  +  G       AW+++
Sbjct:   75 ENRPDIIITNPPFKLALEFLEKSLKEADVSV-YLLRLGFLESKKRRAFHQENPPTNLIVLSERPSFVAGGTDKTAYAWYVY 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig757.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE6.710e-4150.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI3.500e-1636.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A433N1N0_CHLFR9.110e-1332.05Uncharacterized protein n=1 Tax=Chlorogloeopsis fr... [more]
A0A6H5L6X2_9PHAE1.350e-863.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2W4YX34_9CYAN5.200e-726.28Uncharacterized protein n=1 Tax=Phormidesmis pries... [more]
A0A6H5L1N5_9PHAE3.550e-531.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K7QKA5_9CAUD8.120e-534.57Uncharacterized protein n=17 Tax=Phapecoctavirus T... [more]
UPI001FF64C0F8.120e-534.57hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig757contigP-littoralis_Contig757:23869..24750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog102129.Lepto7375DRAFT_7442
PFAMsAcyltransferase,MMPL,Methyltransf_21,Methyltransf_25,Methyltransf_31
Model size450
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.33e-14
EggNOG OGsCOG2813@1|root,COG2813@2|Bacteria,1GAGN@1117|Cyanobacteria,1HHWT@1150|Oscillatoriales
DescriptionSpecifically methylates the guanine in position
Cds size420
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791562.4120603-CDS-P-littoralis_Contig757:23868..241321680791562.4120603-CDS-P-littoralis_Contig757:23868..24132Pylaiella littoralis U1_48CDSP-littoralis_Contig757 23869..24132 -
1680791562.4240274-CDS-P-littoralis_Contig757:24564..247201680791562.4240274-CDS-P-littoralis_Contig757:24564..24720Pylaiella littoralis U1_48CDSP-littoralis_Contig757 24565..24720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791562.4356155-UTR-P-littoralis_Contig757:24720..247501680791562.4356155-UTR-P-littoralis_Contig757:24720..24750Pylaiella littoralis U1_48UTRP-littoralis_Contig757 24721..24750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig757.14.1prot_P-littoralis_Contig757.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig757 23869..24720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig757.14.1

>prot_P-littoralis_Contig757.14.1 ID=prot_P-littoralis_Contig757.14.1|Name=mRNA_P-littoralis_Contig757.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MMAHLDVGGLVLDCCGSTRNAVCRLLTERGFRVQTNDINSRQARQTIACT
KYAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAHVGVVFKLRLSFLEPS
KTRGQWLKDNPHSLTIVLPRAGYRGRKCNVPQAWFMWYTG
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mRNA from alignment at P-littoralis_Contig757:23869..24750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig757.14.1 ID=mRNA_P-littoralis_Contig757.14.1|Name=mRNA_P-littoralis_Contig757.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=882bp|location=Sequence derived from alignment at P-littoralis_Contig757:23869..24750- (Pylaiella littoralis U1_48)
TATCGGCATCCCTTGCGACAGGTGATTGACATGATGGCCCACTTGGACGT CGGTGGTCTTGTTCTTGACTGCTGCGGGAGCACGAGAAATGCCGTGTGTC GGCTGCTGACAGAAAGAGGCTTTCGTGTTCAGACGAACGACATCAACAGC AGGCAAGCGAGACAGACAATTGCATGTACTAAGTACGTTCAACGGCAGTG CAAACCAATTATCCAATGCCGCCTTCTCGTCCACGTGCTACACGTAATGG TGTGATATATCACAAGGGCGGGATGATAAAAATAGGCGAAACAAATATTT TACCTCCTGAAGGATAACACTGCTTTTTCTCAACGTTGTCGATTCTTGAT TTACGTTAGGCGACCCAGAATGCCCTGATGTTTGAGCCGACAAATCTCGG AAGAAAGCTTTTCAGGTCATCGCCTGCGGAGGATAAGCCTTTCTGAAAGG GGTGGTGATCATGGTGTACACGATACCAAATTCGCCACAGGCTCACAAAT ATTCGCGTATACGATCCACGTTCGTTCTGTCGCCTACGCGTGCATGCCTG TGTTGTTCCCTCACGACAGACTGCCAGCGGACACACACCTCGATGCCTCG GGTGCAGATTTTGTGCAGGCGTACGGGCAGGGAGATAATCGCCCCGACTG GGTCGTCACGAGCCCCCCATACAAAAATGCCTTCGCCATCCTGAAGCAGG CACTGCATGTAGCTCATGTCGGCGTTGTTTTCAAGCTCAGGCTGTCGTTC CTCGAGCCTTCTAAAACTCGCGGACAGTGGTTGAAAGACAACCCACATTC TCTCACGATAGTTCTGCCCCGCGCAGGTTACCGGGGTAGGAAATGTAATG TCCCACAGGCATGGTTCATGTGGTACACTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig757:23869..24750-

>mRNA_P-littoralis_Contig757.14.1 ID=mRNA_P-littoralis_Contig757.14.1|Name=mRNA_P-littoralis_Contig757.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig757:23869..24750- (Pylaiella littoralis U1_48)
ATGATGGCCCACTTGGACGTCGGTGGTCTTGTTCTTGACTGCTGCGGGAG
CACGAGAAATGCCGTGTGTCGGCTGCTGACAGAAAGAGGCTTTCGTGTTC
AGACGAACGACATCAACAGCAGGCAAGCGAGACAGACAATTGCATGTACT
AAGTACGCGTACGGGCAGGGAGATAATCGCCCCGACTGGGTCGTCACGAG
CCCCCCATACAAAAATGCCTTCGCCATCCTGAAGCAGGCACTGCATGTAG
CTCATGTCGGCGTTGTTTTCAAGCTCAGGCTGTCGTTCCTCGAGCCTTCT
AAAACTCGCGGACAGTGGTTGAAAGACAACCCACATTCTCTCACGATAGT
TCTGCCCCGCGCAGGTTACCGGGGTAGGAAATGTAATGTCCCACAGGCAT
GGTTCATGTGGTACACTGGT
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