mRNA_P-littoralis_Contig756.21.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig756.21.2
Unique NamemRNA_P-littoralis_Contig756.21.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 493 bits (1268), Expect = 2.200e-147
Identity = 390/1046 (37.28%), Postives = 515/1046 (49.24%), Query Frame = 3
Query: 1605 DAGVMAQLSLFVRENFPFVLTHRSAAHMCVMEDVTYNLVHGKGFGASRTALEQAHRKEFHAIDLISVAESKSASTIGHIGETLLQWVCPFGTLPFIGVDRRNADQTGGQERQASPRSGGRVGRGSTSSTCANNAWMGEC*RSTAPISTSSLFDCPTLELREARSLSSSSSQSSTSSNRWCFRRVLQSASLKEIKADVKTMVATRYKGRWFQLRRVLYMGMYCEDRALMVEIFRELCDEGHNFSINDDKPAPSDGPVFDLPPDVNPIGCINASGDTKVVRAGVDKLRQEAKYNGGVLGLDIEWEVSLFGALAIPPATIKLAAGKLVVILHVLHGQQKPPEKLPQSLVGSMEDASLFKTGVGIKGDCTRLQRFFGVDVRNVVDLPGLTHQ-----------LDLCLHLLGKRLEKEQHLKSTNVKTQLSR*NLAELTEEQKRYGMLREVRTCLTFG-IGASRSGLTQFSGEWRICTPGTACISTHGGRDECVREGCIIEY-DKNMGVDRY--LPRALSCYSSTLGRKRR*VVRASKVLVPLANMVYPDETDTPRTQPTAHVGDWEDKLLLCDADRMRKAT------------------------------------------NNACDCARVAPPPAATSSQDSGGLFAAPESASTAQGGEQKVGGAYLVGRGQKESPNCSGTTELSNAT-ATGTGG--LVTPSEPFTPGSF-----LMSK---LSAPNQCFLPRMRRVAG*GDDETRQ-----VAANFFTASADHLPRMRLWTASAKTARLCLCLDPFHGMQRPSKLVLKSYGACGAYMARLRDAWFIVYKEDLAGVEEALRLLGKSPEDIETKKRTDRSYFRQRCRRGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYFEGGKDDARSIAVCVAPMTWRDTTCTCSCWRHGAFRRGSLISSSST-------TTGGTLRQAVKNRGLDSSFRVFYDQPVLEAVQKITSVLFGKAAYPAWHPAWVPTSAHGDTGERSWFVRNI 4502
            ++ V+A L L+V+E+FPF LT +SA H  V+ +V  NL+H KGF AS  AL+QAH   FH+++L   +              +L W             RR      G E +           GS       N +      S +    S+++ C  ++   A  L       +        ++ LQSASL+E+K D+K +  TRY G  F+L R++     C D+AL+ EIF EL  EGH FS+ +  P  S+ PV  LPPDV     + A+ D+  ++A VD +R +A+ N G+L LDIEWE+S  GA A PPATI+LAAGK VVI HVLHGQ+  P +LP  LV  +ED  L KTGVGIKGDCTRL  F+GV+V + VDL  L  +            DLC+HLLG++L K+  ++       LS+ N  +L+++QKRY  L      L  G IG     + + + E  +       + T  G D CV EGCI+E+ D+  G   +  +PR      +T    RR  VR  +V VP A  +YPD TD   T  TA +    D ++L DA R+RK T                                              + AR A     TSS     +     + S  +GG    GG        KE P    +   ++A    G GG   VTPSEPF  G       L S+    SA +       +     GDDE        V A+  +A  + L  +       K A L + LD FH MQR SKL+LKS+GAC AY+ARLRDA+F V  EDLA VE ALR  G S E++E KK  D  YF +RCRR IP PAELL RFD V  +         L+ KKT+QPL RAEA  A KRL VHI   C +D    +LYFE GKD   +  +C      R T        H        IS                LRQ++KNRGLD +   FYDQP+LEA+Q++TS L+GKA Y  W    +PTSA+GDTGERS FVR+I
Sbjct:    6 NSDVLALLPLYVQESFPFFLTRKSAIHRDVVAEVADNLMHAKGFSASSEALQQAHLYRFHSMELKYYS--------------MLLW-------------RREEQLDAGVEDEF----------GSFEDADGYNGF------SPSEHYLSTVW-CERMQQSRAARLDK---HVNGVQGEVVLQKALQSASLRELKQDLKALFITRYTGGGFKLPRLVSTDECCNDKALLNEIFEELASEGHQFSVTNSVPIASECPVLHLPPDVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVR-------LSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFRDAEELHVGD--RVRLYTRAGND-CVGEGCIVEHTDETWGTTGFYLVPRR-----ATRRFARRWAVRLDRVHVPRAKTLYPDATDPRGTPATAQLASRVDSVILWDASRLRKTTAILTVGAAGEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEARTAAXXXXTSS-----VHVETSTVSCERGGPGGGGG--------KEGPRLPDSVGEADARRGAGQGGTEFVTPSEPFFCGELDGIEALSSESVACSAGSGGLADEGQAATAGGDDEEEDEVPLDVTADTSSAEVEELLFL-------KVAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGG------LIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKD---AETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQW----LPTSAYGDTGERSGFVRSI 956          
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 2.120e-59
Identity = 207/597 (34.67%), Postives = 275/597 (46.06%), Query Frame = 3
Query: 2772 DLCLHLLGKRLEKEQHLKSTNVKTQLSR*NLAELTEEQKRYGMLREVRTCLTFGIGASRSGLTQFSGEWRICTPGTACISTHGGRDECVREGCIIEY-DKNMGVDR-YL-PRALSCYSSTLGRKRR*VVRASKVLVPLANMVYPDETDTPRTQPTAHVGDWEDKLLLCDADRMRKATNNACDCARVAPPPAATSSQDSGGLFAAPE----SASTAQGGEQKVGGAYLVGRGQKESPNC--SGTTELSNATATGTGGLVTPSEPFTPGSFLMSKLSAPNQCFLPRMRRVAG*GDDETRQV----AANFFTASADHLPRMRLWTASAKTARLCLCLDPFHGMQRPSKLVLKSYGACGAYMARLRDAWFIVYKEDLAGVEEALRLLGKSPEDIETKKRTDRSYFRQRCRRGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYFEGGKDDARSIAVCVAPMTWRDTTCTCSCWRHGAFRRGSLISSSST-------TTGGTLRQAVKNRGLDSSFRVFYDQPVLEAVQKITSVLFGKAAYPAWHPAWVPTSAHGDTGERSWFVRNI 4502
            DLC++LL K+L K+  ++       LS+ N  +L+++QKR              IG     + + + E  +    +  + T  G D CV EGCI+E+ D+  G    YL PR      +T G  RR  V   +V VP A  +YPD TD      TA +    D ++L DA R+RK T      A  AP                       A+ A   E      ++    +  + +C  SG    +     G GGL    +     +                    A  GDDE  +V     A+  +A  + L  ++L     +   L             SKL+LKS+GAC AY+ARLRD +F V  EDLA VE ALR  G S E++E KK  D   F +RCRR IP PAELL+RFD V  +         LL KKT+QPL RAEA  A KRL VHI   C +D    +LYFE GKD   +  +C      R T        H        IS                LRQ++KNRGLD +   FYDQP+LEA+Q++TS L+GKA Y  W    +PTSA+GDTGERS FVR+I
Sbjct:   17 DLCVNLLEKQLPKDPIVR-------LSKWNKLDLSDDQKRR-------------IGELSDSIFRDAEEMHVGD--SVRLYTRAGND-CVGEGCIVEHTDETWGTTGIYLVPRR-----ATRGFARRWAVHLDRVHVPRAKALYPDATDRRGDPATAQLASRVDSVILWDASRLRKMTATPSAGAAGAPXXXXXXXXXXXXXXXXXXXXXXEAARAPAEEAATSSEHV----EASTVSCERSGLRATNGGGKEGAGGLTDERQ-----AXXXXXXXXXXXXXXXXXXATARGGDDEEAEVLLDVTADMSSAEVEELLFLKLKALDQRNYALLRL-----AAGEVSKLILKSHGACRAYLARLRDEFFKVNAEDLAAVEAALRQAGMSKEEVEAKKGKDWVLFLKRCRRLIPRPAELLKRFDVVNNLYGG------LLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKD---AETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQW----LPTSAYGDTGERSGFVRSI 558          
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.590e-41
Identity = 242/967 (25.03%), Postives = 387/967 (40.02%), Query Frame = 3
Query: 1416 PCPRCKTTSHVIAKRFTQKESRRAVLRDSCCDLLGFLHHCHGCESKNQGKPKNSKVPESFPIRDAGVMAQLSLFVRENFPFVLTHRSAAHMCVMEDVTYNLVHGKGFGASRTALEQAHRKEFHAIDLISVAESKSASTIGHIGETLLQWVCPFGTLPFIGVDRRNADQTGGQERQASPRSGGRVGRGSTSSTCANNA----WMGE--C*RSTAPISTSSLFDCPTLELREARSLSSSSSQSS--------TSSNRW---CFRRVLQSASLKEIKADVKTMVATRYKGRWFQLRRVLYMGMYCEDRALMVEIFRELCDE--GHNFSINDDKPAPSDG----PVFDLPPDVNPIGCINASGDTKVVRAGVDKLRQEAKYNGGVLGLDIEWEVSLFGALAIPPATIKLAAGK-LVVILHVLHGQQKPPEK-LPQSLVGSMEDASLFKTGVGIKGDCTRLQRFFGVDVRNVVDLPGLTHQL----------DLCLHLLGKRLEKEQHLKSTNVKTQLSR*NLAELTEEQKRYGMLREVRTCLTFGIGASRSGLTQFSGEWRICTPGTACISTHGGRDECVREGCIIEYDKNM-GVDRYLPRALSCYSSTLGRKRR*VVRASKVLVPLANMVYPDETDTPRTQPTAHVGDWEDKLLLCDADRMRKATNNACDCARVAPPPAATSSQ---DSGGLFAAPESASTAQGGEQKVGGAYLVGRGQKESPNCSGTTELSN-------ATATGTGGLVTPSEPFTPGSFLMSKLSAPNQCFLPRMRRVAG*GDDETRQVAANFFTASADHLPRMRLWTASAKTARLCLCLDPFHGMQRPSKLVLKSYGACGAYMARLRDAWFIVYKEDLAGVEEALRLLGKSPEDIETKKRTDRSYFRQRCRRGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYFEGGKDDA 4178
            PCP C   +          E RR  L D  C L+G+ + C GC   N+G+P++ +  ++F   DAGV+A +  +V + FPFVLT ++A    V++ +  +L+ G GF A+  +L   +   +    L S     +     H G     W  P   L  I       D +G      S    G +       T    A    W  E    R    +   SL    + +  +   LS+ +  +         T  N +    F + + +AS+ ++K D+K M   R+ G  F+L  + Y    C+DR L++ +F+E+  E     +   ++    S G    P  + PP        +   ++  +   V  L    +  G VLGLD EWE SL G    P +T++L+          +  G +K      P++L   +E+ S+ K GV I  D T L+R +G++V N VDL     Q            +   LLG++L K+  ++ +   + LS        ++Q R        +C+  G+G              +    TA  +  G      R+G + +    + GV  + P A   Y++  G  R     AS V       V  DE         A+ GD   +L+L D   +R  ++     A  AP     +S+   D+   F +P                ++V     E P+     E          ++A G  GL    E    G        A N                              D    M  W    + A L + LD FH +QR S+L  KS+GA   +MARL+DA FIV ++D+  VE+AL   G +PE +   K    +YF + CRR +P    LL RF+SVI    N      ++  K+ + L+  +   A  +L  HI++  ++DP G  LY+  G++ A
Sbjct:   54 PCPHCNKRAQPDG---WNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSLANTYHARYFN-QLRSYVSLANRCVSRHKG----MW--PNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQADGCSWTREEYLQRRAQLVDGCSLAGDASFKYAKVIRLSAGADGTRARPVHGIFTIMNEYDQVVFSKAMTTASVHDLKNDLKMMFVKRFLGHGFKLPVIFYSDECCDDRQLLLTMFKEIELETGARLYDTAEEAGGGSPGVEVLPALEFPPGKRGECVFDFRPNS--IAPSVVALIDGCQLQGNVLGLDCEWEPSLGGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETPSRSLAGMASSLLGRQLPKDPVIRLSRWSSPLS--------DDQVRLYSNNHA-SCV--GVG-------------EVQDDDTAAEALAGWFPGARRKGRLTQVVVGLSGV--FKPAA---YTAHKGAPRA----ASGV-----GRVTMDE---------AYKGD---RLVLWDVAHVRLVSDWKPSPAAAAPSSNENASEAYNDNAQFFTSPRPP-------------HVVRLQDDEDPDDGDEEEYDGHDCGDLGSSARGDHGLWAGVEAGGGGG------GAVNGTXXXXXXXXXXXXXXXXXXXXXXXXXXGGD--VDMDDWLGDEQCA-LQVRLDIFHALQRISRLCKKSHGAFKPFMARLKDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKSWTYFLRNCRRLVPERQRLLERFNSVINQFCN------VVDAKSGEVLILPKVMQAVDQLRKHIESDRLSDPHGVPLYYTTGQNAA 930          
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 9.620e-37
Identity = 210/816 (25.74%), Postives = 325/816 (39.83%), Query Frame = 3
Query: 2157 LQSASLKEIKADVKTMVATRYKGRWFQLRRVLYMGMYCEDRALMVEIFRELCDE--GHNFSINDDKPAPSDG----PVFDLPPDVNPIGCINASGDTKVVRAGVDKLRQEAKYNGGVLGLDIEWEVSLFGALAIPPATIKLAAGK-LVVILHVLHGQQKPPEK-LPQSLVGSMEDASLFKTGVGIKGDCTRLQRFFGVDVRNVVDLPGLTHQL----------DLCLHLLGKRLEKEQHLKSTNVKTQLSR*NLAELTEEQKRYGMLREVRTCLTFGIGASRSGLTQFSGEWRICTPGTACISTHGGRDECVREGCIIEYDKNM-GVDRYLPRALSCYSSTLGRKRR*VVRASKVLVPLANMVYPDETDTPR--------TQPTAHVGDWEDKLLLCDADRMRKATNNACDCARVAPPPAATSSQ---DSGGLFAAPESASTAQGGEQKVGGAYLVGRGQKESPNCSGTTELSNATATGTGGLVTPSEPFTPGSFLMSKLS-APNQCFLPRMRRVAG*GDDETRQVAANFFTASADHLPRMRLWTASAKTARLCLCLDPFHGMQRPSKLVLKSYGACGAYMARLRDAWFIVYKEDLAGVEEALRLLGKSPEDIETKKRTDRSYFRQRCRRGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYFEGGKDDAR-SIAVCVAPMTWRDTTCTCSCWRHGAFRRGSLISSSSTTTGGTLRQAVKNRGLDSSFRVFYDQPVLEAVQKITSVLFGKAAYP--AWHPAWVPTSAHGDTGERSWFVRNI 4502
            + +AS+ ++K D+K M   R+ G  F+L  V++    C+DR L++ +F+E+  E     +   ++    S G    P  + PP        +   ++  +   V  L    +  G VLGLD EWE SL G    P +T++L+          +  G +K      P++L   +E+ S+ K GV I  D T L+R +G++V N VDL     Q            +   LLG++L K+  ++S+   + LS  +  E+ + Q                          FS       PGT           CV  G + + D     +  + P A        GR  + VV  S V  P A   Y     TP         T   A+ GD   +L+L D   +R  ++     A  AP     +S+   D+   F +P                ++V     E P+     E         G        F  G         A N                              D    M  W    + A L + LD FH +QR S+L  KS+GA   +MARLRDA FIV ++D+  VE+AL   G +PE +   K  + +YF + CRR +P    LL RF+SVI    N      ++  K+ + L+R +A  A  +L  HI++ C++DP G  LY+  G++ A  +   CV    + +            +R               +R AVKNRGL      F+DQ  +E +Q+ TS     + YP     P W+      DTGE+S   +++
Sbjct:    1 MTTASVHDLKNDLKMMFVKRFLGHGFKLP-VIFSDECCDDRQLLLTMFKEIELETGARLYDTAEEAGGGSPGVEVLPALEFPPGKRGECVFDFRPNS--IAPSVVALTDGCQLQGNVLGLDCEWEPSLAGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETPSRSLAGMASSLLGRQLPKDPVIRSSRWSSPLS--DNQEVAKFQDPI-----------------------FSPPPVELHPGTKVRLYSNNHASCVGVGEVQDDDTAAEALAGWFPGA-----RRKGRLTQVVVGLSGVFKPAA---YTAHKGTPSAASGVGRVTMDEAYKGD---RLVLWDVAHVRLVSDWKPSPAAAAPSSNENASEAYNDNAQFFTSPRPP-------------HVVRLQDDEDPDDGDEEEYDGHDCGDLGSSARGDHGFWAGVEAGGGGGGAVNGTXXXXXXXXXXXXXXXXXXXXXXXXXXXGD--VDMDDWLGDEQCA-LQVRLDIFHALQRISRLCKKSHGAFKPFMARLRDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKNWTYFLRNCRRLVPERQRLLERFNSVINQFCN------VVDAKSGEVLIRPKAMQAVDQLRKHIESDCLSDPHGVPLYYTTGQNAAGITTRRCVRGTNYTEFN----------YRWN-------------IRMAVKNRGLPREVGEFFDQFEIEIIQRETS-----SWYPDNPLFPEWISALDAADTGEKSGLSQSL 727          
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.940e-27
Identity = 174/677 (25.70%), Postives = 263/677 (38.85%), Query Frame = 3
Query: 2424 DTKVVRAGVDKLRQEAKYNGGVLGLDIEWEVSLFGALAIPPATIKLAAGKLVVILHVLH--GQQKPPEKLPQSLVGSMEDASLFKTGVGIKGDCTRLQRFFGVDVRNVVDLPGLTHQ--LDL-CLHLLGKRLEKEQHLKSTNVKTQLSR*NLAELTEEQKRYGMLREVRTCLTFG-IGASRSGLTQFSGEWRICTPGTACISTHGGRDECVREGCIIEYDKNMGVDRYLPRALSCYSSTLGRKRR*VVRASKVLVPLANMVYPDETDTPRT--QPTAHVGDWEDK--LLLCDADRMRKATNNACDCARVAPPPAATSSQDSGGLFAAPESASTAQGGEQKVGGAYLVGRGQKESPNCSGTTELSNATATGTGGLVTPSEPFTPGSFLMSKLSAPNQCFLPRMRRVAG*GDDETRQVAANFFTASADHLPRMRLWTASAKTARLCLCLDPFHGMQRPSKLVLKSYGACGAYMARLRDAWFIVYKEDLAGVEEALRLLGKSPEDIETKKRTDRSYFRQRCRRGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYFEGGKD-DARSIAVCVAPMTWRD------TTCTCSCWRHGAFRRGSLISSSSTTTGGTLRQAVKNRGLDSSFRVFYDQPVLEAVQKITSV 4403
            D   +   V  L       G VLG+D EWE +  G+   P  T++LA       L  L   G+   P     +L   + D ++ K GV +KGD  RLQR + V+ R +VDL        +DL C  L G          S +   + S  +  ELT  Q  Y  L      L    IG  +  +    GE     P     +         + G ++     +G                G  +R VV+    L P ++ V  D+   P    Q    V D  D    +L D   +R A+ +        P  AA +       F AP  A       Q V   Y  G   +        ++      +G G  +  SE  + G         P+         VA      +++ A + F                         LD FH + R S+ + K +GA    MARLRDA F+V ++D+  +E+ L   G SP  ++  K  D SYF ++CRR +PPP+ELL+RFD V++   N       +   +++ LLR ++  A   L  HI AGC++DP G ++Y+  GK  D      CV      +       T   S     A  +  L+  +       L+  VKNRGL +     Y+Q ++E +Q+ T +
Sbjct:  165 DKTAIDIAVANLVGGCATQGMVLGMDCEWEPAFNGSSERPVCTLQLALPDGTSSLFHLQRGGRGITPSTFNTNLKRLLGDLAITKVGVAVKGDGKRLQRDYDVETRGMVDLRSYARACWVDLPCRSLAGMTATALGKYLSKDAAGRFSHWSRPELTPNQIEYACLDAYAAVLLHAEIGKFKDPIF---GEAPSEVPAAGTKTEEEATSLLEKWGTVLTLGGRVGTRS-------------GGLQRVVVKVDNALKP-SSFVPHDKAPPPAQDGQRRVTVKDVVDGAGFVLWDIVHVRLASAHRSFEGTPLPGGAADADAHQDDFFDAPRPA-------QAV---YQNGGDVESDLEADSESDDDTFGESGAGADLASSEASSGG---------PSASXXXXDAAVA------SQEEAGDMFFVR----------------------LDLFHALNRLSRTIKKGHGAFRPIMARLRDACFLVNRDDVLQIEKVLERRGMSPAQVQQAKDQDWSYFLRKCRRLVPPPSELLKRFDKVVQEFGN------CVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTTDGLVNYRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWN---LKMMVKNRGLPAELGEHYNQHLVEIIQRATEL 768          
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 6.330e-27
Identity = 188/745 (25.23%), Postives = 292/745 (39.19%), Query Frame = 3
Query: 2424 DTKVVRAGVDKLRQEAKYNGGVLGLDIEWEVSLFGALAIPPATIKLAAGK-LVVILHVLHGQQKP-PEKLPQSLVGSMEDASLFKTGVGIKGDCTRLQRFFGVDVRNVVDLPGL--THQLDL-CLHLLGKRLEKEQHLKSTNVKTQLSR*NLAELTEEQKRYGMLREVRTCLTFG-IGASRSGLTQFSGEWRICTPGTACISTHGGRDECVREGCIIEYD------KNMGVDRYLPRALSCYSSTLGRKRR*VVRASKVLVPLANMVYPDETDT-------PRTQPT---AHVGDWEDKLLLCDADRMRKATNNACDCARVAPPPAATSSQDS--GGLFAAPESASTAQGGEQKVGGAYLVGRGQKESPNCSGTTELSNATATGTGGLVTPSEPFTPGSFLMSKLSAPNQCFLPRMRRVAG*GDDETRQVAANFFTASADHLPRMRLWTASAKTARLCLCLDPFHGMQRPSKLVLKSYGACGAYMARLRDAWFIVYKEDL-------------AGVEEALRLLGKSPEDIETKKRTDRSYFRQRCRRGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYFEGGKD-----DARSIAVCVAPMTWRDTTCTCSCWRHGAFRRGSLISSSSTTTG--------GTLRQAVKNRGLDSSFRVFYDQPVLEAVQKITSVLFGKAAYPAWHPAWVPTSAHGDTGERSWFVRNIRG 4508
            D K +   V +  +  K  G VLG+D EWE    G+      T++LA       + H+  G ++  P    +SL   + D ++ K GV +KGD +RLQR +GV+   +VDL     T  +DL C  L G          S N   + SR + AELT+ Q  Y  L      +    IG S+  +   +    I   GT         + CV  G + + +      +  G D  L +     S  L   +R VV+   VL P +   + D           PR   +    H G   +  +L D   +R A+++     +  P PAA++  D+     F  P  A      +  V  A L G      P+ S   +  + +A G G                              +  A                      P       S +       LDPFH + R S++  KS+GA   +MARLRDA F+V ++D+               VE  L   G  PE+++     + S+F +  RR +P    LL+RFD VI            +   + + LLR +A  A ++L  HI+  C++DP G ++YF  GK+     D R +         R T       R+      S  +S S              LR  +KNRGL ++    Y+Q ++E++Q+ T+     +++P + P W       DTGER    R++ G
Sbjct:   68 DEKAINLAVMEFVEGCKQQGHVLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCRSLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQVNYACLDAYAAVVLHAEIGKSKDPIFCMAPS-DIPIAGTEVRLYTNNHESCVGVGQVQDEEAARSLVEKWGTDLKLAQREGTRSGGL---KRVVVKVVDVLKPASLTPHQDAPPXXXXXXGQPRVAVSMNDVHSGKGFEGFVLWDLVHVRLASDH--HPFQGIPVPAASADPDAHVDNFFDEPRPAQAVYQNDGDVESA-LGGE-----PDGSSDDDTLDESAAGVGAXX-------------------XXXXXXXXKGAASAAXXXXXXXXXXXXXXXXXXAPEEPHGVFSVR-------LDPFHTLNRISRMTKKSHGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRFDRVIEEFGG------CVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNKHGLTDYRCV---------RGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADW--DSSHPVF-PEWPAAIDSVDTGERFGLERSLWG 756          
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.630e-27
Identity = 100/287 (34.84%), Postives = 145/287 (50.52%), Query Frame = 3
Query: 3684 MRLWTASAKTARLCLCLDPFHGMQRPSKLVLKSYGACGAYMARLRDAWFIVYKEDL---AGVEEALRLLGKSPEDIETKKRTDRSYFRQRCRRGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYFEGGKDDAR-SIAVCVAPMTWRDTTCTCSCWRHGAFRRGSLISSSSTTTGGTL--------RQAVKNRGLDSSFRVFYDQPVLEAVQKITSVLFGKAAYPAWHPAWVPTSAHGDTGERSWFVRNIRG 4508
            M  W  + ++A L + LD FH +QR SKL  KS+GA   +MARLRDA FIV  +D+   + VE+AL   G +PE +   K  + ++F + CRR +P    LL RF+ VIR         +++  K+ + LLR  AR A + L  HI++GC++DP    LY+  GK+ A  +   CV     R T CT    R+      +  +S S      L        R AVKNRGL      F+DQ  +E +Q+ T+  +  +      P WV      DTGE+S    ++ G
Sbjct:  165 MDYWVGNGESA-LKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIR------QFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNSAGITTRRCV-----RGTNCTEGYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPL---FPEWVSALDAADTGEQSGLSESLWG 436          
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.640e-26
Identity = 86/191 (45.03%), Postives = 104/191 (54.45%), Query Frame = 3
Query: 3951 RGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYFEGGKDDARSIAVCVAPMTWRDTTCTCSCWRHGAFRRGSLISSSST-------TTGGTLRQAVKNRGLDSSFRVFYDQPVLEAVQKITSVLFGKAAYPAWHPAWVPTSAHGDTGERSWFVRNI 4502
            R IP PAELL RFD V  +         L+ KKT+QPL RAEA  A KRL VHI   C +D    +LYFE GKD   +  +C      R T        H        IS                LRQ++KNRGLD +   FYDQP+LEA+Q++TS L+GKA Y  W    +PTSA+GDTGERS FVR+I
Sbjct:  206 RLIPRPAELLERFDLVNNLYGG------LIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKD---AETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQW----LPTSAYGDTGERSGFVRSI 383          
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.040e-24
Identity = 98/286 (34.27%), Postives = 142/286 (49.65%), Query Frame = 3
Query: 3684 MRLWTASAKTARLCLCLDPFHGMQRPSKLVLKSYGACGAYMARLRDAWFIVYKEDL---AGVEEALRLLGKSPEDIETKKRTDRSYFRQRCRRGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYFEGGKDDARSIAVCVAPMTWRDTTCTCSCWRHGAFRRGSLISSSSTTTGGTL--------RQAVKNRGLDSSFRVFYDQPVLEAVQKITSVLFGKAAYPAWHPAWVPTSAHGDTGERSWFVRNIRG 4508
            M  W  + ++A L + LD FH +QR SKL  KS+GA   +MARLRDA FIV  +D+   + VE+AL   G +PE +   K  + ++F + CRR +P    LL RF+ VIR         +++  K+ + LLR  AR A + L  HI++GC++DP    LY+   K    +   CV     R T CT    R+      +  +S S      L        R AVKNRGL      F+DQ  +E +Q+ T+  +  +      P WV      DTGE+S    ++ G
Sbjct:  165 MDYWVGNGESA-LKVRLDIFHALQRVSKLCKKSHGAFRPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIR------QFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYT--KSAGITTRRCV-----RGTNCTEGYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPL---FPEWVSALDAADTGEQSGLSESLWG 433          
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 120 bits (302), Expect = 4.920e-24
Identity = 87/243 (35.80%), Postives = 119/243 (48.97%), Query Frame = 3
Query: 3732 LDPFHGMQRPSKLVLKSYGACGAYMARLRDAWFIVYKEDLAGVEEALRLLGKSPEDIETKKRTDRSYFRQRCRRGIPPPAELLRRFDSVIRV*SNYTS*HNLLHKKTEQPLLRAEAR*AAKRLIVHIKAGCINDPVGASLYF-EGGKDDARSIAVCVAPMTWRDTTCTCSCWRHGAFRRGSLISSSST--------TTGGTLRQAVKNRGLDSSFRVFYDQPVLEAVQKITSVLFGKAAYPAW 4433
            LD FH M R +K +LKS+GA   +MARLRDA+F++ K+DL  V  AL+  G S ++IE KK  D ++F + C R IP   ELL+R+D V     +      +L  KT +PL R+  +   + L  HI+ GC++D     LYF EG       I  C      R T       RH         SS                +R AVKNRGL S +  FY Q +L+ + + +S L     Y AW
Sbjct:  437 LDCFHAMNRINKTLLKSHGAYKPFMARLRDAFFLISKDDLDLVVAALKTAGLSDDEIEAKKDYDWAFFLKYCHRLIPCKEELLKRYDFVCNTFQD------ILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRTSQGLPIYRCA-----RGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGFYSQSLLDEINRNSSGLSVHVPYLAW 668          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig756.21.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE2.200e-14737.283'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE2.120e-5934.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV2_ECTSI1.590e-4125.033'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV1_ECTSI9.620e-3725.74Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
D7G3Q9_ECTSI2.940e-2725.703'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE6.330e-2725.233'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JPK9_9PHAE7.630e-2734.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD89_9PHAE3.640e-2645.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE3.040e-2434.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2A9B5_9FUNG4.920e-2435.803'-5' exonuclease domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig756contigP-littoralis_Contig756:74361..80788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIV2
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size4511
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categorysignal peptide
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons11
Evalue2.79e-14
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size1245
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig756.21.2prot_P-littoralis_Contig756.21.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig756 75197..77282 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791561.4347308-UTR-P-littoralis_Contig756:74360..747391680791561.4347308-UTR-P-littoralis_Contig756:74360..74739Pylaiella littoralis U1_48UTRP-littoralis_Contig756 74361..74739 +
1680791561.4478047-UTR-P-littoralis_Contig756:74758..750821680791561.4478047-UTR-P-littoralis_Contig756:74758..75082Pylaiella littoralis U1_48UTRP-littoralis_Contig756 74759..75082 +
1680791561.4601102-UTR-P-littoralis_Contig756:75120..751961680791561.4601102-UTR-P-littoralis_Contig756:75120..75196Pylaiella littoralis U1_48UTRP-littoralis_Contig756 75121..75196 +
1680791561.53169-UTR-P-littoralis_Contig756:77282..773951680791561.53169-UTR-P-littoralis_Contig756:77282..77395Pylaiella littoralis U1_48UTRP-littoralis_Contig756 77283..77395 +
1680791561.5434802-UTR-P-littoralis_Contig756:77549..783021680791561.5434802-UTR-P-littoralis_Contig756:77549..78302Pylaiella littoralis U1_48UTRP-littoralis_Contig756 77550..78302 +
1680791561.553404-UTR-P-littoralis_Contig756:78510..793301680791561.553404-UTR-P-littoralis_Contig756:78510..79330Pylaiella littoralis U1_48UTRP-littoralis_Contig756 78511..79330 +
1680791561.5626643-UTR-P-littoralis_Contig756:79582..798241680791561.5626643-UTR-P-littoralis_Contig756:79582..79824Pylaiella littoralis U1_48UTRP-littoralis_Contig756 79583..79824 +
1680791561.571854-UTR-P-littoralis_Contig756:80072..805081680791561.571854-UTR-P-littoralis_Contig756:80072..80508Pylaiella littoralis U1_48UTRP-littoralis_Contig756 80073..80508 +
1680791561.5841112-UTR-P-littoralis_Contig756:80665..807881680791561.5841112-UTR-P-littoralis_Contig756:80665..80788Pylaiella littoralis U1_48UTRP-littoralis_Contig756 80666..80788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791561.4788122-CDS-P-littoralis_Contig756:75196..756151680791561.4788122-CDS-P-littoralis_Contig756:75196..75615Pylaiella littoralis U1_48CDSP-littoralis_Contig756 75197..75615 +
1680791561.4908853-CDS-P-littoralis_Contig756:76030..764031680791561.4908853-CDS-P-littoralis_Contig756:76030..76403Pylaiella littoralis U1_48CDSP-littoralis_Contig756 76031..76403 +
1680791561.5060868-CDS-P-littoralis_Contig756:76561..769551680791561.5060868-CDS-P-littoralis_Contig756:76561..76955Pylaiella littoralis U1_48CDSP-littoralis_Contig756 76562..76955 +
1680791561.5201964-CDS-P-littoralis_Contig756:77223..772821680791561.5201964-CDS-P-littoralis_Contig756:77223..77282Pylaiella littoralis U1_48CDSP-littoralis_Contig756 77224..77282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig756.21.2

>prot_P-littoralis_Contig756.21.2 ID=prot_P-littoralis_Contig756.21.2|Name=mRNA_P-littoralis_Contig756.21.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=415bp
MVEKTIFVALLLLVHGQLVVSPPAPAPAPVGRPKRKKSRPGSAKTSPPTH
AEKERKSKINSGGRGRGGRVTLLSEAVVLQGVMPVAAAAAAAAAAAVARE
EAAAEVVVAAVAAVAMRVRCPNQPVAAAAAAVACNVRPHRCGSRVKASRR
GYEGQDFRERPNSRHTQLFCRRPVGVPSEPDHAQDVGLGRFPPPCLFGSV
SRRLHNFPEGRQPCPRCKTTSHVIAKRFTQKESRRAVLRDSCCDLLGFLH
HCHGCESKNQGKPKNSKVPESFPIRDAGVMAQLSLFVRENFPFVLTHRSA
AHMCVMEDVTYNLVHGKGFGASRTALEQAHRKEFHAIDLISVAESKSAST
IGHIGETLLQWVCPFGTLPFIGVDRRNADQTGGQERQASPRSGGRVGRGS
TSSTCANNAWMGEC*
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mRNA from alignment at P-littoralis_Contig756:74361..80788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig756.21.2 ID=mRNA_P-littoralis_Contig756.21.2|Name=mRNA_P-littoralis_Contig756.21.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6428bp|location=Sequence derived from alignment at P-littoralis_Contig756:74361..80788+ (Pylaiella littoralis U1_48)
TTTTCCTCCTAGCACGATATGTGCCTGGTTTGTGACCACGGGCTAGACTG CGGCGGTAGTGAGCTAATGTGAGAATCAACAACAACAACAACCAACACCC ACACCCACACCCACACCTACACCTTCGCTGTATGTACGACCTTCCTTCTG TGTGACCCCGGCTGGTGTGCCCACTTCATACCGAAAGGTGTCTGGTGCCT AGAACAAATGGGATGAAAATACAAATCACACACGTGTACTTGTTACAGGC AACAATCGTGGTACAGGGGTAGATTTGTAGATTATAGTATTCGGAAAGGC TGTCCTATTTTTGCGGGTACTGACTGTACTCGTACAGTAGTGGGTCTCGA ATAGCCTTTGTTCACTCTAATCAAACAAGAAATAAGTTCAAGAGGCACCA CATGAAAAAGTGCATCTCATTTTTTTACGTACGTACTTCGGAGTATTGTT TTTCCCCTGTCGGAGCACTACTATATCATATTGATACGTAGCCTGCGTTG GGGTAAAAACTTGTTTTTTGTGTAAAGGGATGACATATCAGTGGGGTGCC CGACATAAGTCGGCCGCACGCCCATGCTCTTACCTGACTACCCGTAGCAC AGAATCAGAGAGCTCCAATTTTGCTTTTAAGGGGGTGCAAGAAGAGACTC CCCATGAGTACACCATAGTACAGGCAAGCACAGGGAGTGTTTTTGCGGCG CGACCAGCAGCTTCACAGTGCCGTCCGGTGTGGCAGCTCCGGCTGTGACA GCAGAGCTAGGTCGCCTGTGTGTCAGGTCGCCTGTGTGTGAGACAGAGTG GACTATCGCCGGCTTAATATCCCTCTGGTATGAGGTATGGTGGAGAAGAC CATCTTTGTCGCATTGCTACTCTTAGTTCATGGCCAGCTTGTGGTCTCCC CTCCTGCTCCCGCCCCTGCTCCTGTTGGGAGGCCCAAACGGAAAAAAAGC CGTCCTGGTTCGGCCAAGACAAGTCCTCCAACCCATGCCGAAAAGGAACG GAAAAGTAAAATAAACAGTGGAGGCCGTGGTCGGGGGGGCAGGGTGACTC TTCTGTCGGAGGCAGTAGTGCTGCAAGGGGTAATGCCGGTGGCGGCGGCA GCAGCAGCAGCAGCAGCAGCAGCGGTGGCGCGGGAGGAAGCAGCAGCGGA GGTGGTGGTAGCAGCAGTAGCAGCAGTAGCAATGCGAGTTCGATGCCCCA ACCAGCCAGTAGCAGCAGCGGCAGCAGCTGTAGCTTGCAACGTCCGTCCT CACCGGTGAGAACTATTTGAGGGTGTGGGCGTGCTTTGATTTGGTGCAAC AGCAGTTTTGCCACGTATGCCTTGCCTTCCCGATCGTGATTACACCAGGG ATAGCGCCGCATCCCGATCTGTTGTTCACTCGTATCTGACGTACCCAACC GTAAAGACTGCTGTAGTCTTTGTTGCGAGATTTTGGAGTGCAAAACATTC GGTATCTGTGGACTTGTAGTGTACAAAGCATGTGTATGGAGACGATATCG TCGAGAAGAATCACCGCCACATTGACGCAGGCCGCAACCCCCATGTGCAT CTTCTGCAAGCTCCGTATCGGTGTCTATATTGAAGTATTTTTTGTCAAAA CGACCCCCAGCCCACATGTTTCTTGTTTTTTATTGTTTGTGTGTCAAATT TGCGGGGCATATGTATACAGGTGCGGATCTCGGGTCAAAGCAAGTCGTCG CGGATATGAAGGCCAAGATTTCCGAGAGCGCCCCAACTCACGTCATACGC AATTATTCTGTCGACGACCTGTGGGAGTACCCTCCGAACCCGACCATGCT CAAGACGTTGGGCTTGGTAGATTTCCACCTCCGTGTTTGTTCGGATCCGT GAGTAGACGTCTACATAACTTTCCGGAGGGACGGCAGCCTTGTCCACGCT GCAAGACGACATCCCACGTGATTGCGAAGAGATTTACGCAGAAGGAGTCA CGGCGAGCTGTTCTGCGGGATTCCTGCTGTGACCTCCTCGGGTTTCTTCA CCACTGCCATGGGTGCGAGAGCAAGAATCAGGGGAAGCCGAAGGTAAGAT TTAATAAATGCTCCTTCTCACTAGCTACGTTCGAAGGATCAGAGTAACGC TACCCGGCAACCCTAGTGCTGTTTGCGTTCACGGCCTGTCCAACCTCACT CAACCGCAACTCACCCGCACATCTTCATGCGTTTTCCCGCTATGCGATCA GAATTCCAAGGTCCCGGAGAGTTTCCCGATTCGAGATGCTGGAGTCATGG CGCAGCTTTCCCTTTTCGTGCGTGAGAATTTTCCTTTCGTCCTGACCCAC AGGTCGGCTGCTCACATGTGCGTGATGGAGGACGTGACTTATAACTTGGT GCACGGCAAAGGCTTCGGCGCGTCGCGCACCGCCTTGGAACAGGCGCATC GAAAGGAGTTCCACGCGATTGACCTAATCTCTGTGGCGGAATCAAAATCT GCTTCTACAATCGGCCATATCGGAGAGACCCTTTTACAATGGGTTTGTCC CTTTGGCACACTACCTTTCATCGGTGTGGACCGACGTAATGCAGACCAGA CCGGTGGCCAAGAACGACAAGCTAGTCCAAGGAGTGGAGGGCGAGGTATG GGAACTTTGGTAGATATCCATCATTTTCTAGAAAAGTGGTCGCCTTGGTA GGGTCGTTGTAAGGTGGTGTAGTAGCCGGCTTGAAGTTTGACAGACAAAC GTTAGTTAGTTGTGTCAGTCGAAAACATAGCATATCGTCCTTGGTCGCCG CTTGCGCTACTACTGATAGCATACAATGTGGTGTCTACCAGTTTACTATT GCTGAGTCGCTCGCTCTCTCTACTTGATGCTCATTGATTTCACGTGGATG ATTCCCGGTCAAGTTGGTCGCGGGAGCACTTCATCCACCTGCGCCAACAA TGCATGGATGGGAGAGTGCTGAAGGTCGACGGCTCCCATAAGTACATCAA GCTTGTTCGATTGTCCGACTCTGGAGCTGCGGGAGGCACGAAGCCTGTCT TCTTCATCATCACAATCTTCGACGAGTTCGAACAGGTTCGTGTGTTTTCC GTAGTTACGAACAGATCTTCTCGCTTTTTGAACGCACGGTGTAGGTTGTA CATGGTCATGCAGCTCCACAGCTTTAAAAACGGGTGAGCGTCAACGTGAC TCTACATGCATGTATTGATGCCCCGAAATCGGCCCACAGGTGGTGTTTCA GAAGAGTTTTGCAGTCAGCTTCTCTCAAAGAGATCAAGGCAGACGTGAAG ACGATGGTCGCGACACGGTACAAGGGTAGATGGTTTCAGCTGCGGAGGGT GTTGTACATGGGCATGTACTGCGAAGACCGAGCGCTGATGGTGGAGATCT TTCGGGAACTGTGCGATGAGGGGCACAATTTTTCGATCAACGACGACAAG CCAGCCCCCTCTGACGGCCCAGTTTTTGACCTTCCTCCCGACGTTAATCC AATCGGCTGCATTAATGCGAGTGGGGACACGAAGGTTGTGAGGGCAGGGG TTGACAAGTTGCGGCAGGAAGCGAAGTACAACGGTGGTGTGCTTGGTTTG GACATCGAGTGGGAAGTATCTCTCTTCGGCGCCCTTGCTATTCCTCCTGC AACGATTAAACTTGCTGCAGGGAAGCTAGTCGTCATTTTGCACGTCTTGC ATGGCCAGCAAAAGCCTCCGGAGAAGCTGCCCCAGTCGCTGGTTGGTTCG ATGGAGGATGCTAGTCTATTCAAGACGGGTGTCGGGATCAAGGGCGACTG CACTCGGCTCCAGCGGTTCTTTGGGGTGGATGTGCGAAATGTGGTAGATC TGCCAGGACTGACGCATCAGCTGGATTTATGCCTTCATCTGCTGGGAAAA CGCTTGGAGAAGGAGCAGCACCTGAAATCAACAAACGTGAAAACTCAACT TTCGCGCTAGAACTTGGCGGAGCTAACGGAGGAGCAGAAGAGGTGAGGTG TCACGTTTGAGTAGCCTTGCAAGCAAACTGCTGCTTGAAGCTAAGCCTCT CCTGTTGTGCATCGTGCAAAACGAGTACTTCCCCCCGTCCATTCGTAGTC TTGGCCCAGTGATGCTTGATGTGGTGCATAGAGCTGTTTGCAGATTTTTA TGTCTGGTCACCCTTTTGTTTTGTACGCCTCGAACGCTTTCTTTTACAAG GTATGGTATGCTGCGCGAGGTGCGTACGTGTCTTACCTTTGGTATAGGTG CATCACGGAGCGGTCTGACGCAATTTTCAGGAGAGTGGAGGATTTGCACG CCGGGGACTGCGTGCATCTCTACACACGGGGGACGGGATGAGTGTGTGCG CGAGGGCTGCATCATCGAGTATGACAAAAACATGGGGGTCGACAGGTATC TTCCTCGCGCCTTGTCGTGCTACAGCAGTACACTCGGTCGCAAGCGTCGA TGAGTTGTGCGGGCATCGAAGGTACTTGTGCCCCTCGCAAACATGGTGTA CCCAGACGAGACCGACACCCCGCGGACCCAGCCGACCGCGCACGTGGGAG ATTGGGAGGACAAACTCCTGTTGTGCGACGCAGATCGCATGCGAAAGGCC ACGAACAACGCTTGTGACTGCGCGAGGGTCGCGCCACCTCCGGCTGCCAC GTCGAGTCAAGACAGCGGTGGCCTATTTGCTGCGCCAGAATCTGCGTCCA CAGCCCAAGGTGGGGAGCAAAAGGTTGGTGGTGCTTATCTCGTCGGAAGA GGACAAAAGGAGTCGCCAAACTGTTCCGGCACAACTGAGCTGTCGAATGC GACCGCGACTGGAACGGGTGGATTGGTTACTCCTTCGGAGCCGTTTACGC CGGGGAGCTTCCTGATGTCGAAGCTCTCAGCGCCGAATCAGTGTTTCTTG CCACGAATGCGACGGGTTGCGGGTTGAGGGGATGATGAGACGAGGCAGGT GGCAGCAAACTTCTTCACGGCGAGCGCCGACCACCTGCCGAGGATGAGGC TATGGACGGCGTCAGCAAAGGTCAGCATGAAGAGCAAGTGCTGCTTGAGA TGAGTGAGGGTTGTCGGACGGTCGTCGTAAGTCGCTTTTCAAATGCCGAG CACGTCTCACCGGGGACATCGCCTGCCCCCTACGATACCTAGAAATAGTG CTCTCCGTGTGTTGTCTTTCTTCGTTTCTCTTTGTTTCAGCAGCCTCGCG GAACCCCGTACAGCCCGACGCTCTCATGATTGAATCGAACAATCTCATGC TTTACACTCGATACCTATGCAGACGGCACGGCTGTGCCTCTGCCTGGACC CTTTTCACGGAATGCAACGACCGAGCAAACTGGTCCTCAAGAGTTACGGC GCGTGTGGTGCATACATGGCGCGGCTGAGAGATGCTTGGTTCATCGTGTA CAAGGAAGACCTTGCCGGCGTGGAAGAAGCCCTACGTCTTTTGGGCAAGA GCCCGGAAGATATCGAGACCAAGAAGAGAACTGATCGGTCATATTTTCGA CAGAGGTGCCGCAGGTAAGCAGAGTCGGAGCGTTTAGAGAGAGGGATCTG GTTGGGAGGGATATGGCGCTCAAATATTTCGTGTGCGGTGTCTGTGAAAT TGCAAGTGGAGCACCTTGTTATTTATTTCGACGACGCTTGTACGCAGCTC GGCCTTTCTTGCGGCAGCTAAAAAGGGGTTGTGCATTTGCCCACCAATCT CGCCTTCTCAAATGACGCGTGAACCGTACGTTCCCTCATTTCGACTTGTG TGTATCTTACAGGGGGATTCCGCCACCCGCCGAGCTGCTCAGGCGGTTTG ACTCGGTCATCCGTGTCTAAAGCAACTACACCTCTTAACACAACCTCTTG CATAAGAAAACTGAGCAGCCTTTGCTCAGGGCAGAAGCGCGGTAGGCCGC GAAGCGACTAATAGTCCACATCAAAGCAGGCTGCATCAACGACCCGGTGG GCGCGTCGCTGTATTTCGAGGGGGGGAAGGATGATGCCCGCTCTATCGCT GTGTGCGTGGCACCAATGACCTGGAGGGATACCACCTGCACGTGCTCCTG CTGGCGGCATGGTGCGTTTCGCCGAGGCTCGCTCATCTCCTCCTCGAGCA CGACTACAGGTGGAACCCTACGCCAGGCCGTCAAAAACCGAGGTCTTGAC TCCTCTTTTCGGGTTTTTTACGACCAGCCGGTGCTGGAGGCCGTACAGGT CAGTTCTAAGATTGTGCGGAATCCATTCCGAAGACCGTGGCTAGCTCTCT GTATTGCGGTGGGGTTTAATTTGTGTTTCAACTTTGACTGCATTCTTCAT GATAAAGAGCAAAGCCCTTTTTCCCACTCTCCTATTGTCAAACTCTTTTT GCCAGAAAATTACATCAGTGCTTTTCGGCAAAGCTGCGTACCCGGCCTGG CACCCGGCCTGGGTGCCGACGAGTGCGCACGGTGACACTGGGGAACGCAG CTGGTTCGTTCGGAACATTCGAGGTTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig756:74361..80788+

>mRNA_P-littoralis_Contig756.21.2 ID=mRNA_P-littoralis_Contig756.21.2|Name=mRNA_P-littoralis_Contig756.21.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1245bp|location=Sequence derived from alignment at P-littoralis_Contig756:74361..80788+ (Pylaiella littoralis U1_48)
ATGGTGGAGAAGACCATCTTTGTCGCATTGCTACTCTTAGTTCATGGCCA
GCTTGTGGTCTCCCCTCCTGCTCCCGCCCCTGCTCCTGTTGGGAGGCCCA
AACGGAAAAAAAGCCGTCCTGGTTCGGCCAAGACAAGTCCTCCAACCCAT
GCCGAAAAGGAACGGAAAAGTAAAATAAACAGTGGAGGCCGTGGTCGGGG
GGGCAGGGTGACTCTTCTGTCGGAGGCAGTAGTGCTGCAAGGGGTAATGC
CGGTGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGTGGCGCGGGAG
GAAGCAGCAGCGGAGGTGGTGGTAGCAGCAGTAGCAGCAGTAGCAATGCG
AGTTCGATGCCCCAACCAGCCAGTAGCAGCAGCGGCAGCAGCTGTAGCTT
GCAACGTCCGTCCTCACCGGTGCGGATCTCGGGTCAAAGCAAGTCGTCGC
GGATATGAAGGCCAAGATTTCCGAGAGCGCCCCAACTCACGTCATACGCA
ATTATTCTGTCGACGACCTGTGGGAGTACCCTCCGAACCCGACCATGCTC
AAGACGTTGGGCTTGGTAGATTTCCACCTCCGTGTTTGTTCGGATCCGTG
AGTAGACGTCTACATAACTTTCCGGAGGGACGGCAGCCTTGTCCACGCTG
CAAGACGACATCCCACGTGATTGCGAAGAGATTTACGCAGAAGGAGTCAC
GGCGAGCTGTTCTGCGGGATTCCTGCTGTGACCTCCTCGGGTTTCTTCAC
CACTGCCATGGGTGCGAGAGCAAGAATCAGGGGAAGCCGAAGAATTCCAA
GGTCCCGGAGAGTTTCCCGATTCGAGATGCTGGAGTCATGGCGCAGCTTT
CCCTTTTCGTGCGTGAGAATTTTCCTTTCGTCCTGACCCACAGGTCGGCT
GCTCACATGTGCGTGATGGAGGACGTGACTTATAACTTGGTGCACGGCAA
AGGCTTCGGCGCGTCGCGCACCGCCTTGGAACAGGCGCATCGAAAGGAGT
TCCACGCGATTGACCTAATCTCTGTGGCGGAATCAAAATCTGCTTCTACA
ATCGGCCATATCGGAGAGACCCTTTTACAATGGGTTTGTCCCTTTGGCAC
ACTACCTTTCATCGGTGTGGACCGACGTAATGCAGACCAGACCGGTGGCC
AAGAACGACAAGCTAGTCCAAGGAGTGGAGGGCGAGTTGGTCGCGGGAGC
ACTTCATCCACCTGCGCCAACAATGCATGGATGGGAGAGTGCTGA
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