mRNA_P-littoralis_Contig756.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig756.18.1
Unique NamemRNA_P-littoralis_Contig756.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig756.18.1 vs. uniprot
Match: A0A6H5JJC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.370e-27
Identity = 87/224 (38.84%), Postives = 120/224 (53.57%), Query Frame = 2 
Query:   92 SLKLRG*RRDT------VTYCDNDEDALCLKAKEMAEKLFKNTLEKFNKA--------------QMANEELAGTPVAGALLTAR*AAL*ERYCQGGLALGPSMWSPTEVPPEKEAPEKEDWRKTAPAIVSEMRSMTKEASLEQLASLDIPAATELQTEGVELGELPQFAGGIRNAVA-AASWRRNNEGRRTFQTLLTAVAHDGDDDTKLTLKRKSELIGVNPGH 700
            + KL   R+DT      V Y  +DEDALC KA+E AE++ K   +++ K               + A+ E+ G PV  AL          R  + G+    +     + PPE+E PE+ +W  T+PA V+ MR+MT    L  LA L +PAA +L+ +   L E  +     R A+  AA   R  EGRRTFQTLLTAVA+DGD  +K+T KRKSE+ GV+P H
Sbjct:   42 TTKLMDQRKDTRVVVQLVAYPKDDEDALCSKAREKAEEILKTRRDRYEKTLQPSSGVRRCGNTGRRADSEM-GCPVRAAL---------PRKTRAGVTRPTTP----DRPPEEEPPEQFEWSDTSPAFVAAMRAMTTTELLRCLAELKVPAADKLREQ---LEEARELQSACRRALKDAAIQGRTKEGRRTFQTLLTAVAYDGDGPSKVTAKRKSEIFGVHPEH 248
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BLAST of mRNA_P-littoralis_Contig756.18.1 vs. uniprot
Match: A0A6H5JIQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.120e-17
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 2 
Query:  362 PEKEAPEKEDWRKTAPAIVSEMRSMTKEASLEQLASLDIPAATELQTEGVELGELPQFAGGIRNAVA-AASWRRNNEGRRTFQTLLTAVAHDGDDDTKLTLKRKSELIGVNPGH 700
            PE+E PE+ +W  T+PA V+ MR+MT    L  LA L +PAA +L+ +   L E  +     R A+  AA   R  EGRR FQTLLTAVA+DG+  +K+T KRKSE+ G++P H
Sbjct:   27 PEEEPPEQFEWSDTSPAFVAAMRAMTTTELLRCLAELKVPAADKLREQ---LEEARKLQSACRRALKDAAIQGRAKEGRRAFQTLLTAVAYDGNGPSKVTAKRKSEIFGIHPEH 137
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BLAST of mRNA_P-littoralis_Contig756.18.1 vs. uniprot
Match: A0A6H5KDQ3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.240e-15
Identity = 70/233 (30.04%), Postives = 111/233 (47.64%), Query Frame = 2 
Query:   14 KSIKYIIE*VDSARKGSRSPAD**CGSLKLRG*RRDTVTYCDNDEDALCLKAKEMAEKLFKNTLEKFNKAQMANEELAGTPVAGALLTAR*AAL*ERYCQGGLALGPSMWSPTEVPPEKEAPEKEDWRKTAPAIVSEMRSMTKEASLEQLASLDIPAATELQTEGVELGELPQFAGGIRNAVAAASWR-RNNEGRRTFQTLLTAVAHDGDDD---TKLTLKRKSELIGVNPGH 700
            + IK     +DS RKG ++                +   YC+  E  L   A+E A+ +         K  +     +G   A  +++    A  +   +G      +  +P    PE +     DWR ++ + ++ MRSM +   L+ LA   + AA  L+ E  +  +  +   G + A+AAAS + R NEGRRTFQT+LTA A DGDD    +++T KRK+EL+GV+P H
Sbjct:   37 RGIKLRTTLLDSKRKGRKAA---------------ENTGYCEASEVVLSNLAREKADAIMAGKRNAARKNGIPQGGGSGGCGADRVMSCPVIAAIQGSHEGLRTRSSATTNPAANNPEPQP----DWRDSSESFLAAMRSMAEGELLDFLAGQGVAAADLLRKEQADARDARKMVAGTKKALAAASTQGRTNEGRRTFQTILTAAAFDGDDGDEPSRVTSKRKAELLGVHPEH 250
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BLAST of mRNA_P-littoralis_Contig756.18.1 vs. uniprot
Match: A0A6H5J8X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8X6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.220e-14
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 2 
Query:  425 MRSMTKEASLEQLASLDIPAATELQTEGVELGELPQFAGGIRNAVAAASWR-RNNEGRRTFQTLLTAVAHDGDDD---TKLTLKRKSELIGVNPGH 700
            MRSM +   L+ LA   + AA  L+ E  +  +  +   G + A+AAAS + R NEGRRTFQT+LTA A DGDD    +++T KRK+EL+GV+P H
Sbjct:    1 MRSMAEGELLDFLAGQGVAAADLLRKEQADARDARKMVAGTKKALAAASTQGRTNEGRRTFQTILTAAAFDGDDGDEPSRVTSKRKAELLGVHPEH 96
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BLAST of mRNA_P-littoralis_Contig756.18.1 vs. uniprot
Match: A0A6H5JIV9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.160e-11
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 2 
Query:  425 MRSMTKEASLEQLASLDIPAATELQTEGVELGELPQFAGGIRNAVA-AASWRRNNEGRRTFQTLLTAVAHDGDDDTK-LTLKRKSELIGVNPGH-SRPRAGVLNHWTRMP 745
            M+SMT EA L  L+   IPAA ELQ   ++L +  QF    R A+  AA + R N+GR+T+QT+LTA A+DGD+ T+ L   RK+E++GV+P   SR R  V +    +P
Sbjct:    1 MKSMTSEALLACLSQEGIPAAQELQELQLQLEDARQFQAASREALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLP 110
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BLAST of mRNA_P-littoralis_Contig756.18.1 vs. uniprot
Match: A0A6H5KQH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.390e-5
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2 
Query:  512 ELGELPQFAGGIRNAVA-AASWRRNNEGRRTFQTLLTAVAHDGDDDTK-LTLKRKSELIGVNPGH-SRPRAGVLNHWTRMP 745
            EL +  QF    R A+  AA + R N+GR+T+QT+LTA A+DGD+ T+ L   RK+E++GV+P   SR R  V +    +P
Sbjct:   28 ELEDARQFQATSRAALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLP 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig756.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JJC8_9PHAE1.370e-2738.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIQ3_9PHAE1.120e-1747.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDQ3_9PHAE3.240e-1530.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8X6_9PHAE6.220e-1446.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIV9_9PHAE1.160e-1144.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQH6_9PHAE4.390e-543.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig756contigP-littoralis_Contig756:69553..71183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1349
Hectar predicted targeting categoryother localisation
Exons2
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791561.197677-UTR-P-littoralis_Contig756:69552..700751680791561.197677-UTR-P-littoralis_Contig756:69552..70075Pylaiella littoralis U1_48UTRP-littoralis_Contig756 69553..70075 -
1680791561.2391293-UTR-P-littoralis_Contig756:70846..711831680791561.2391293-UTR-P-littoralis_Contig756:70846..71183Pylaiella littoralis U1_48UTRP-littoralis_Contig756 70847..71183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791561.212362-CDS-P-littoralis_Contig756:70075..705281680791561.212362-CDS-P-littoralis_Contig756:70075..70528Pylaiella littoralis U1_48CDSP-littoralis_Contig756 70076..70528 -
1680791561.2266598-CDS-P-littoralis_Contig756:70810..708461680791561.2266598-CDS-P-littoralis_Contig756:70810..70846Pylaiella littoralis U1_48CDSP-littoralis_Contig756 70811..70846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig756.18.1prot_P-littoralis_Contig756.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig756 70076..70846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig756.18.1

>prot_P-littoralis_Contig756.18.1 ID=prot_P-littoralis_Contig756.18.1|Name=mRNA_P-littoralis_Contig756.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
MWSPTEVPPEKEAPEKEDWRKTAPAIVSEMRSMTKEASLEQLASLDIPAA
TELQTEGVELGELPQFAGGIRNAVAAASWRRNNEGRRTFQTLLTAVAHDG
DDDTKLTLKRKSELIGVNPGHSRPRAGVLNHWTRMPFRRKQWTMSEGLTF
LFIGERGQVYRK*
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mRNA from alignment at P-littoralis_Contig756:69553..71183-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig756.18.1 ID=mRNA_P-littoralis_Contig756.18.1|Name=mRNA_P-littoralis_Contig756.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1631bp|location=Sequence derived from alignment at P-littoralis_Contig756:69553..71183- (Pylaiella littoralis U1_48)
CGGCTCGGTGAAAAAGAGCATCAAGTACATCATTGAATAAGTGGATTCCG
CACGCAAGGGCTCAAGATCACCAGCAGACTGATGATGTGGCAGTCTCAAA
CTTCGAGGGTAAAGGAGAGATACTGTGACCTACTGCGACAACGACGAGGA
CGCCTTGTGCTTGAAAGCTAAGGAAATGGCCGAGAAACTGTTCAAGAATA
CGCTGGAAAAGTTCAACAAAGCACAAATGGCGAACGAAGAGCTGGCGGGA
ACACCAGTAGCGGGGGCGCTGCTGACAGCACGGTAGGCTGCCCTGTGAGA
GCGGTACTGCCAAGGAGGACTCGCGCTGGGGCCATCCATGTGGTCGCCCA
CTGAAGTTCCTCCTGAGAAAGAGGTAGGAGGTTAGGTTTTACTTCATATT
TCACAGCAGAAGAGAAAAATGCTGTTGTGTCCACTGCTGGACGCACAATG
GATTGTTCCCGCCTCTCTAAAATGCTGCTGTGTCTACAACAATACGCATA
ATGGATTGTTATCGTCTCCGTAAAATAAACGTTGTTTTGTCATACATACG
CACAATATATTATCCCCTCTGACCACATTGTATCTGCCACCCAGCACTGA
CTGCTGTTTTGCCGTCCCGCATTGCTGTATGCTACTGCTTTACGTAATCG
CATAGGCACCGGAGAAGGAGGATTGGAGGAAAACTGCGCCAGCAATCGTG
TCCGAGATGAGAAGCATGACGAAGGAAGCTTCGCTGGAGCAGCTGGCGTC
CCTTGACATCCCCGCCGCCACCGAGCTTCAGACGGAGGGCGTCGAGTTGG
GGGAGCTCCCGCAGTTCGCGGGGGGCATCAGAAATGCTGTCGCAGCAGCT
AGCTGGAGGCGAAACAACGAGGGGAGAAGAACGTTTCAGACACTTCTTAC
GGCCGTTGCGCACGACGGGGACGATGACACAAAATTGACGCTCAAGCGCA
AGTCCGAGCTCATCGGAGTTAACCCCGGCCACTCACGGCCGCGCGCCGGC
GTGCTCAATCATTGGACCCGGATGCCCTTCCGACGGAAGCAATGGACAAT
GTCTGAGGGATTGACTTTTTTATTTATTGGGGAGAGGGGTCAGGTTTACC
GGAAATAGAGGCAAGTAAAGTATCCCCACCACGTGCATGCTGTCCTCTCC
TCCTTATTCCTCCTGATCGCTTACTCATTGATCTTGCCCATCGCGAAACG
AGCTACACCTTGCGAGTTGTGAGGTTTGCACGTGGAGGTTTGTGTGTTAT
TTTTGCTTCCCCCCGGAAAAAAAAACCGCGCTTCATTTCCTCTACAGGGG
AGACTCGGCTTAAAAAAATGAAAAATCCCTACCCCCGGGGTAATAAAGCA
GTTCAACAAGTAGCAATGGGTGTAGGCCGTGTGAAGTGGGTACGGATTCG
TCACACGGGTTTTGAAGTCATCATGAAGGAGGCACACAAACAACAATGAG
ACTAAAGAAAATAATAGTCTACAGCAGTAACGGCCCATGAGGAACATCTA
TTTTAAGCGAGGCTCAAAACCTTATCTTGTCCCGCCACGAGGCACAGGCT
GTTTCTTAGCATATGCTTCGAAGTACTTTGTATACAGGATTAGTGTGGCG
TCTGCCGCTGATCCCAATTTCTTAGACCGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig756:69553..71183-

>mRNA_P-littoralis_Contig756.18.1 ID=mRNA_P-littoralis_Contig756.18.1|Name=mRNA_P-littoralis_Contig756.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig756:69553..71183- (Pylaiella littoralis U1_48)
ATGTGGTCGCCCACTGAAGTTCCTCCTGAGAAAGAGGCACCGGAGAAGGA
GGATTGGAGGAAAACTGCGCCAGCAATCGTGTCCGAGATGAGAAGCATGA
CGAAGGAAGCTTCGCTGGAGCAGCTGGCGTCCCTTGACATCCCCGCCGCC
ACCGAGCTTCAGACGGAGGGCGTCGAGTTGGGGGAGCTCCCGCAGTTCGC
GGGGGGCATCAGAAATGCTGTCGCAGCAGCTAGCTGGAGGCGAAACAACG
AGGGGAGAAGAACGTTTCAGACACTTCTTACGGCCGTTGCGCACGACGGG
GACGATGACACAAAATTGACGCTCAAGCGCAAGTCCGAGCTCATCGGAGT
TAACCCCGGCCACTCACGGCCGCGCGCCGGCGTGCTCAATCATTGGACCC
GGATGCCCTTCCGACGGAAGCAATGGACAATGTCTGAGGGATTGACTTTT
TTATTTATTGGGGAGAGGGGTCAGGTTTACCGGAAATAG
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