mRNA_P-littoralis_Contig756.15.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: D7G906_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G906_ECTSI) HSP 1 Score: 139 bits (350), Expect = 2.450e-35 Identity = 85/134 (63.43%), Postives = 93/134 (69.40%), Query Frame = 2
Query: 254 MLNAMSRNRWLC---AVTAVAE----ARAVLAKHFTPMVPPVLKRRPQQRFDFSSSSGGTREDVIASILESKVEASKAVVHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLTRPTP 634
M A +RN LC AV A AE A AV P+ +RR S+ S RED IASILESK+EASKAVVHDISGGCGSM+KIEVESPLFRGKGLVAQHR+VK AL EIADMHGLTLLTRP+P
Sbjct: 1 MWAAFARNPRLCVPAAVKACAEFPLRAIAVAGSDSRACYWPLEQRR-----GLSNGSDSPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSP 129
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: A0A7S2CEL3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEL3_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 6.240e-20 Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 2
Query: 251 VMLNAMSRNRWLCAVTAVAEARAVLAKHFTPMVPPV--LKRRPQQRFDFSSSSGGTREDVIASILESKVEASKAVVHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLTRPTP 634
VML A+ R+ A +A V+A P +P + + RP SS +ED++ L + +E + +V D+SGGCGSM+KIEVESPLFRG LV QHR+V D LK EI +MHGLT+ TR +P
Sbjct: 10 VMLRAIGRSA--AAAIPARQAPCVVAPSSLPALPALGGVLHRPM-------SSEVPKEDLMKEALIAALEPTDVLVEDVSGGCGSMYKIEVESPLFRGVNLVKQHRMVTDTLKKEIGEMHGLTINTRRSP 130
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: A0A836CI04_9STRA (Bola protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI04_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.080e-17 Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query: 395 SSSGGTREDVIASILESKVEASKAVVHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLTRPTP 634
+ + G++E + +L +++A+K V DISGGCGSM+ I +ESPLF+G LV QH++VK LK EIA MHGLTL T+ +P
Sbjct: 34 TEAAGSQEKAMEKLLGKELKATKVTVEDISGGCGSMYSIAIESPLFKGLSLVKQHQLVKSTLKKEIAAMHGLTLQTKVSP 113
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: A0A7S2H125_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H125_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 8.740e-17 Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 2
Query: 392 SSSSGGTREDVIASILESKVEASKAVVHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLTRPTP 634
S S G ++E+ + L + AS V DISGGCG+M+K+EVESP FRG ++ QHR+V LK EI +MHGLTL TR TP
Sbjct: 31 SESDGVSKEESMRLALSQALNASFVSVDDISGGCGAMYKLEVESPDFRGLNMLKQHRLVTQVLKKEIGEMHGLTLQTRVTP 111
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: A0A3R7H807_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H807_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.950e-16 Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 2
Query: 365 RRPQQRFDFSSSSGGT---REDVIASILESKVEASKAVVHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLT 622
+RP R FSSS GT E + S L +++EA V D+SGGCGSMF IEV SP F+G+ V QHR+V + LK EI MHGLT+ T
Sbjct: 14 KRPMSRAWFSSSGDGTGSEAEQAMHSALAARLEAVHVKVTDVSGGCGSMFDIEVASPQFKGQSRVKQHRMVNEILKEEIKSMHGLTIRT 102
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: A0A4D9DBR1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBR1_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 4.470e-16 Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 2
Query: 392 SSSSGGTREDVIASILESKVEASKAVVHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLTRP 628
+S+ RED + ++L + + ++ D+SGGCG+M+ +EVES LFRGK LVAQHR+V L EI++MHGL+L TRP
Sbjct: 45 NSAESVAREDRMRALLSEHFKPTHLLIQDVSGGCGAMYNMEVESELFRGKALVAQHRMVNQVLAKEISEMHGLSLKTRP 123
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: A0A1V9Y5G4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5G4_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 5.510e-16 Identity = 47/83 (56.63%), Postives = 57/83 (68.67%), Query Frame = 2
Query: 389 FSSSSGGTREDVIASILESKVEASKAVVHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLTRPTPA 637
FSS++ E+ +A L ++ A+ V DISGGCGSM+KIEV SP F GK +VAQHR+V LK EIA MHGLTL T TPA
Sbjct: 14 FSSAA----EEKMAVALRQELSATHVKVDDISGGCGSMYKIEVASPTFEGKNVVAQHRLVNQVLKEEIAGMHGLTLKTY-TPA 91
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: A0A067C2D2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C2D2_SAPPC) HSP 1 Score: 83.2 bits (204), Expect = 1.090e-15 Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 2
Query: 410 TREDVIASILESKVEASKAVVHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLTRPTPA 637
T E+ +A+ L + A+ V DISGGCGSM+KIEV SP F GK VAQHR+V + LK EI MHGLTL T TPA
Sbjct: 21 TAEEKMATSLRQALSATHVKVDDISGGCGSMYKIEVASPTFEGKNRVAQHRLVNEVLKEEIGGMHGLTLKTY-TPA 95
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: C5K6X1_PERM5 (Uncharacterized protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5K6X1_PERM5) HSP 1 Score: 82.0 bits (201), Expect = 1.920e-15 Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 2
Query: 377 QRFDFSSSSGGTREDVIASILESKVEASKAVVHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLTRPTP 634
+RF S ++ T E + S+L + + A+ A V D+SGGCGS +K+EV SP F G + QH++V DALK EI H +T++T+PTP
Sbjct: 3 RRFFCSPAATNTYEKSLESLLRASLGATSAKVQDVSGGCGSSYKVEVHSPKFIGLTRIKQHQMVNDALKDEIKKWHAITIITKPTP 88
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Match: A0A7S1PLD1_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1PLD1_NEODS) HSP 1 Score: 80.9 bits (198), Expect = 4.890e-15 Identity = 38/79 (48.10%), Postives = 58/79 (73.42%), Query Frame = 2
Query: 422 VIASILESKVEASKAV-------VHDISGGCGSMFKIEVESPLFRGKGLVAQHRIVKDALKAEIADMHGLTLLTRPTPA 637
V A+ +ESK+ A+ A+ + DISGGCGS FK++VESP F+GK ++ QHR+V + LK EIA++HG+T++++ PA
Sbjct: 10 VTAADIESKLRAADALAPLRDVKIDDISGGCGSFFKVQVESPAFQGKSMLQQHRLVHEVLKKEIAEIHGITVVSKVPPA 88 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig756.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig756.15.1 >prot_P-littoralis_Contig756.15.1 ID=prot_P-littoralis_Contig756.15.1|Name=mRNA_P-littoralis_Contig756.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp MYRCSIHVSDPPNRYSIAVVRRHLNCSHHFRFPVRAPPSPSATPTTAVLLback to top mRNA from alignment at P-littoralis_Contig756:53443..56124- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig756.15.1 ID=mRNA_P-littoralis_Contig756.15.1|Name=mRNA_P-littoralis_Contig756.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2682bp|location=Sequence derived from alignment at P-littoralis_Contig756:53443..56124- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig756:53443..56124- >mRNA_P-littoralis_Contig756.15.1 ID=mRNA_P-littoralis_Contig756.15.1|Name=mRNA_P-littoralis_Contig756.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig756:53443..56124- (Pylaiella littoralis U1_48)back to top |