mRNA_P-littoralis_Contig755.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig755.29.1
Unique NamemRNA_P-littoralis_Contig755.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: D8LR18_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR18_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.150e-22
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1
Query:   52 IAALPVEALTAGSLSNLAEDSRECCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECK 249
            IAALP EALTAG+L++L +D R+CCICL+DF+AG++ATRLPC+ HLYHT CI  WL+ S  CP+CK
Sbjct:  405 IAALPGEALTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCL-HLYHTVCIENWLQTSGTCPQCK 469          
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: A0A6H5L176_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L176_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.930e-21
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   52 IAALPVEALTAGSLSNLAEDSRECCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECK 249
            IAALP E LTAGSL++L +D R+CCICL++F+AG+RATRLPC+ HLYH+ CI  WL+ S  CP+CK
Sbjct:  538 IAALPGETLTAGSLAHLKDDGRQCCICLEEFEAGERATRLPCL-HLYHSVCIENWLQTSGTCPQCK 602          
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: A0A0L0FCC5_9EUKA (RING-type domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FCC5_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 3.590e-17
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   28 GQATSRAVIAALPVEALTAGSLSNLAEDSRECCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECK 249
            G+A +R +I ALP E L+  +++ L E S+ CCICL+DF+AG++  RLPC+ H YH  CI  WL +   CP CK
Sbjct:   46 GRAANRWLIHALPTETLSKAAIAKLEEGSQNCCICLEDFKAGEKMKRLPCL-HTYHDHCIDEWLSRRGTCPVCK 118          
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: A0A7S2I4A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4A8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.340e-12
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   40 SRAVIAALPVEALTAGSLSNLAEDSRECCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECKQDV 258
            S+  I  LP  ++T   L +  E++RECCICL +   GDR TRLPC  H++H KCI  WL KS  CP C+ ++
Sbjct:   65 SKKAILQLPTVSVTPEDLVD--ENNRECCICLDENNLGDRVTRLPC-AHIFHQKCIYDWLLKSCTCPVCRYEL 134          
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: A0A8J2SU41_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SU41_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.870e-12
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   61 LPVEALTAGSLSNLAEDSRECCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECKQDVG 261
            LPV   T   L+   + +RECC+CL+  + GDRAT+LPC  HL+HT+C+  WLRK   CP C+ ++ 
Sbjct:  152 LPVVRATEEDLAK--DGNRECCVCLEAQEVGDRATKLPC-GHLFHTECVVQWLRKHGTCPSCRYELA 215          
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: A0A0D9XAL5_9ORYZ (RING-type domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XAL5_9ORYZ)

HSP 1 Score: 67.8 bits (164), Expect = 1.470e-11
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   52 IAALPVEALTAGSLSNLAEDSRECCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECKQDV 258
            IAALPV   T  SL+  A D   C +CLQDF+AG+ A RLP   H +H +CI  WL +   CP C++ V
Sbjct:  175 IAALPVTTFTHQSLAADAGDHAGCSVCLQDFEAGEEARRLPECEHTFHLQCIDSWLMRHASCPLCRRTV 243          
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: A0A7S4RBJ6_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBJ6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.610e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   40 SRAVIAALPVEALTAGSLSNLAEDSRECCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECKQDV 258
            S+  I  LP   +T   L +  E++RECCICL +   GD+ TRLPC  H++H +CI+ WL KS  CP C+ ++
Sbjct:   60 SKKAIRQLPTVTVTPEDLVD--ENNRECCICLDENNLGDKVTRLPC-AHIFHQRCIQDWLLKSCTCPVCRYEL 129          
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: A0A835Z4Y2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.110e-10
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   40 SRAVIAALPVEALTAGSLSNLAEDSRECCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECKQDVG 261
            S+A + AL    L+A  ++ L E  R CCICL++F+AG     L C+ H +HT CI   L++ ++CP CK  VG
Sbjct:   78 SQAALDALTDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECL-HCFHTTCIDAALQRRDECPICKHRVG 150          
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: L1J3G9_GUITC (RING-type domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J3G9_GUITC)

HSP 1 Score: 59.7 bits (143), Expect = 5.510e-10
Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   52 IAALPVEALTAGSLSNLAEDSRECCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECKQDV 258
            I+ LP E     +     E++ ECCICL ++  G++  +LPC+ H +H+ C+  WL  +  CP CK+ +
Sbjct:    6 ISRLPFERFEPATGKGSGEEATECCICLCEYDVGEKLRKLPCL-HRFHSVCVDRWLLSNKMCPICKESI 73          
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Match: A0A6G1CCI8_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CCI8_9ORYZ)

HSP 1 Score: 62.8 bits (151), Expect = 8.930e-10
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   52 IAALPVEALTAGSLSNLAEDSRE-CCICLQDFQAGDRATRLPCMTHLYHTKCIRMWLRKSNKCPECKQDV 258
            IAALPV   TA + +  A   R  C +CLQDF+AG+ A RLP   H +H +CI  WL +   CP C++ V
Sbjct:  178 IAALPVTTFTAHTAAADARGERAGCSVCLQDFEAGEEARRLPECGHTFHLECIDSWLLRHASCPLCRRTV 247          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig755.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR18_ECTSI2.150e-2266.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L176_9PHAE1.930e-2165.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A0L0FCC5_9EUKA3.590e-1748.65RING-type domain-containing protein (Fragment) n=1... [more]
A0A7S2I4A8_9STRA2.340e-1246.58Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A8J2SU41_9STRA2.870e-1246.27Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0D9XAL5_9ORYZ1.470e-1147.83RING-type domain-containing protein n=1 Tax=Leersi... [more]
A0A7S4RBJ6_9STRA6.610e-1143.84Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A835Z4Y2_9STRA3.110e-1041.89RING-type domain-containing protein n=1 Tax=Tribon... [more]
L1J3G9_GUITC5.510e-1034.78RING-type domain-containing protein (Fragment) n=1... [more]
A0A6G1CCI8_9ORYZ8.930e-1045.71RING-type domain-containing protein n=1 Tax=Oryza ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig755contigP-littoralis_Contig755:114326..114589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LR18
PFAMszf-RING_2
Model size264
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.53e-23
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
Descriptionubiquitin-protein transferase activity
Cds size264
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791560.1363559-CDS-P-littoralis_Contig755:114325..1145891680791560.1363559-CDS-P-littoralis_Contig755:114325..114589Pylaiella littoralis U1_48CDSP-littoralis_Contig755 114326..114589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig755.29.1prot_P-littoralis_Contig755.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig755 114326..114589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig755.29.1

>prot_P-littoralis_Contig755.29.1 ID=prot_P-littoralis_Contig755.29.1|Name=mRNA_P-littoralis_Contig755.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
MSASNISPEGQATSRAVIAALPVEALTAGSLSNLAEDSRECCICLQDFQA
GDRATRLPCMTHLYHTKCIRMWLRKSNKCPECKQDVG*
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mRNA from alignment at P-littoralis_Contig755:114326..114589-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig755.29.1 ID=mRNA_P-littoralis_Contig755.29.1|Name=mRNA_P-littoralis_Contig755.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig755:114326..114589- (Pylaiella littoralis U1_48)
ATGTCGGCGTCAAACATCTCACCAGAGGGGCAAGCGACGAGCCGAGCGGT GATCGCGGCGCTGCCGGTGGAGGCACTGACGGCGGGCTCATTGTCGAATT TGGCAGAGGACAGTCGTGAGTGCTGCATCTGTTTACAGGACTTTCAAGCG GGGGACCGCGCTACGCGCTTGCCGTGCATGACACATCTGTACCACACGAA ATGTATCAGAATGTGGCTCCGGAAGTCCAACAAATGCCCGGAGTGCAAAC AGGACGTGGGCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig755:114326..114589-

>mRNA_P-littoralis_Contig755.29.1 ID=mRNA_P-littoralis_Contig755.29.1|Name=mRNA_P-littoralis_Contig755.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig755:114326..114589- (Pylaiella littoralis U1_48)
ATGTCGGCGTCAAACATCTCACCAGAGGGGCAAGCGACGAGCCGAGCGGT
GATCGCGGCGCTGCCGGTGGAGGCACTGACGGCGGGCTCATTGTCGAATT
TGGCAGAGGACAGTCGTGAGTGCTGCATCTGTTTACAGGACTTTCAAGCG
GGGGACCGCGCTACGCGCTTGCCGTGCATGACACATCTGTACCACACGAA
ATGTATCAGAATGTGGCTCCGGAAGTCCAACAAATGCCCGGAGTGCAAAC
AGGACGTGGGCTGA
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