mRNA_P-littoralis_Contig755.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig755.19.1
Unique NamemRNA_P-littoralis_Contig755.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 1.350e-126
Identity = 187/288 (64.93%), Postives = 215/288 (74.65%), Query Frame = 1
Query:    1 RFRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKVRLKMSLHLDGPPDTRQGQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTEFTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHS 864
            RFRVP+ FF  LV+LSR K+WFS G  DAA REGIP+ELKV  K +   D        QLS MS+S+A A FHKFC++ A EMF+EHIYLPTGTY DE M  + +LG TGA GSTDVTH+   MCPFTLGRSFTGKEGFP +A+EVTVDHAGRA+ +T GF G TNDKTT+RYD+ V  IR      +REYKLRK +GTE TR+GCFLIVDNGY+E              +D AFS+ LESVRKDVECFFGILKGRFRILKLR+ YH RE  DNIFFTCCILH+MLH+
Sbjct:   99 RFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVLGKGNCFDDVE------QLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368          
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 3.740e-120
Identity = 165/290 (56.90%), Postives = 214/290 (73.79%), Query Frame = 1
Query:    4 FRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKVRLKMSLHLDGPPDTRQGQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTEFTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHSIDG 873
            FR+P+ FF+ LV L +++ WF  G  DA+GR GIPV+LKV   + +   G        +S +S   AAATFH+F + FA+EM+ EHI+LPTG YQ + M  Y +LG +GA GSTDVTH+ WGMCP+   RS+TGKEG+P +A++VTVDH  R + +T GFTG+TNDK+ +RYD AV  IR + +  ++E+ + +ADGT +  KGC+L+VDNGYH+WVT   PSKYP D +D AFSK LESVRKDVECFFGI+KGRFRILKL + YH +ED DN+FFTCCILH+MLHS D 
Sbjct:  120 FRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDN 409          
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 7.450e-113
Identity = 159/290 (54.83%), Postives = 206/290 (71.03%), Query Frame = 1
Query:    4 FRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKVRLKMSLHLDGPPDTRQGQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTEFTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHSIDG 873
            FRVP+ FF+ LVEL R++ WF  G +D  GR+ +PVELKV   + +   G        +S +S    A+TFH+FCK FA E+++E++YLPTG    + M+ Y ++G  GA+GSTDVTH+ WGMCP+   R +TGKEG P +AF+VTVDH+GR + +T+GFTGATNDKT +RYD AV  IR + V  +++YKL   DG +F  KGC+L+VDNGYH+W T   PSK P D  D  FSK LES RKDVEC+FGILKGRFRI KL + +H +E  DN+FFTCCILH+MLHS D 
Sbjct:  136 FRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 425          
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 7.740e-111
Identity = 160/234 (68.38%), Postives = 183/234 (78.21%), Query Frame = 1
Query:  175 QLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTEFTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHSIDGM 876
            QLS MSKSMA  TFHKFC++FA EMF+EHIYLPTGTY DE M  + +LG TGA GSTDVTH+ W MCPFTLGRSFTGKEGFP +A++VTVDH GR + +T GFTGATNDKT +RYD+ V  IR      +REYKLRKA+GT+  R+GCFLIVDNGYHEWVT  APSKYP   +D AFS+ LESVRKDV CF        RILKLR+ YH RE  DNIFFTCCILH+MLH+ DG+
Sbjct:   55 QLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGL 280          
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 2.950e-108
Identity = 158/293 (53.92%), Postives = 202/293 (68.94%), Query Frame = 1
Query:    4 FRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKVRLKMSLHLDGPPDTRQGQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTEFTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHSIDGM 876
            FRVP +FFLRLV L + K WF+  G DAA R+  PVE KV   +++   G       Q+S MS       FHKFCK+FA+EM++EHIYLP+      D  M  Y +LG +GA+GS DVTH+ W  CP+ L RS+TGKEG P + ++VTV+HAGRAI +T+GFT +TNDKTTV +DA V+ IR +    ++ + +   DGT  T KGC+L+VDNGYH+W     P+KYP   +D  FSK LESVRKDVECFFGILKG FRI K+ + YH +E  DN+FFTCCILH+MLH+ DGM
Sbjct:   60 FRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGM 352          
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.900e-103
Identity = 159/293 (54.27%), Postives = 198/293 (67.58%), Query Frame = 1
Query:    4 FRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKVRLKMSLHLDGPPDTRQGQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTEFTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHSIDGM 876
            FRVP+ FFLRLVEL ++K WF+    DA GR   PVE KV   +++   G        LS MS       FH+FC++FA EM++EHI+LP+      D  M  Y KLG  GA+GSTDVTH+ W  CP+  GRS+TGKEG P + ++VTV+HAGR + +T+GFTG+TNDKT +  D AV  IR +K   ++ + + K DGT  T KGC+LIVDNGYH+W     PSKYP    D  FSK LESVRKDVECFFGILK RFRILKL +TY  +E  D +FFTCCILH+MLH+ DGM
Sbjct:   89 FRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 381          
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 7.450e-102
Identity = 157/241 (65.15%), Postives = 179/241 (74.27%), Query Frame = 1
Query:  217 HKFCKNFAKEMFEEHIYLPTGTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTEFTRKGCFLIVDNG----------YHE---------------WVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHS 864
            HKFC++FA EMF+EHIYL TGTY DE M  + +LG TGA GST+VTH+ W MCPFTLGRSFTGKEGFP +A EVTVDHAGRA+ +T GFTGATNDKT +RYD+ V  IR      +REYKLRKA+GTE TR+GCFLIVDNG          +H+               WVT  APSKYP   +D AFS+ LESVRKDVECFFGILKGRFRILKLR+ YH RE  DNIFFTCCILH+MLH+
Sbjct:  246 HKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 486          
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 2.370e-100
Identity = 159/321 (49.53%), Postives = 198/321 (61.68%), Query Frame = 1
Query:    4 FRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKVRLKMSLHLDGPPDTRQGQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNK----------------------------VCKDREYKLRKADGTEFTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHSIDGM 876
            FRVP+  FLRLV L + K WFS    DA G    PVE KV   +++   G       Q+S MS       FHKFC++FA+EM++E I+LPT      D  M  Y +LG TGA+GS DVTH+ W  CP+   RS+TGKEGFP +A++VTVDHAGRAI +T+GFTG+TNDKT V +D AV+ I  +K                               ++ + +   DGT  T KGC+L+VDNGYH+W     PSKYP   +D  FSK LESVRKDVECFFGILKGRFRILKL + Y  +E  DN+FFTC ILH+MLH+ DGM
Sbjct:   47 FRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGM 367          
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 6.040e-96
Identity = 135/232 (58.19%), Postives = 173/232 (74.57%), Query Frame = 1
Query:  178 LSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTEFTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHSIDG 873
            +S +S    A+TFH+FCK FA E+++E++YLPTG    + M+ Y ++G  GA+GSTDVTH+ WGMCP+   R +TGKEG P +AF+VTVDH+GR + +T+GFTGATNDKT +RYD AV  IR + V  +++YKL   DG +F  KGC+L+VDNGYH+W T   PSK P D  D  FSK LES RKDVEC+FGILKGRFRI KL + +H +E  DN+FFTCCILH+MLHS D 
Sbjct:  103 MSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 334          
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 1.200e-95
Identity = 154/274 (56.20%), Postives = 178/274 (64.96%), Query Frame = 1
Query:   55 KKWFSDGGADAAGREGIPVELKVRLKMSLHLDGPPDTRQGQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEGMDCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDHAGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTEFTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHSIDGM 876
            K W S  G     R G  ++L V  K +   D        QLS MS SMA ATFHKFC++FA EMF+EHI+ PT TY DE M  + +LG TGA  STDVTH+   MCPFTLGRSFTGKEGFP +A+EVTVDHA RA+ +T GFTGA NDKT + YD+ V  IR      +R+YKLRKA+GTE TR+GCF IVDNGYHE                            DVECFFGILKGRFRILKLR+ YH RE  DNIFFTCCI H+MLH+ DG+
Sbjct:   82 KNWSSWQGRSGGFRRGRRMQLTVLGKGNCFDDVE------QLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHE----------------------------DVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCIRHNMLHTFDGL 321          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig755.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSI7_9PHAE1.350e-12664.93DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JAU4_9PHAE3.740e-12056.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE7.450e-11354.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE7.740e-11168.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE2.950e-10853.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.900e-10354.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE7.450e-10265.15DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNX4_9PHAE2.370e-10049.53DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY50_9PHAE6.040e-9658.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K872_9PHAE1.200e-9556.20DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig755contigP-littoralis_Contig755:80940..83211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size876
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.63e-86
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size876
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791559.9927766-CDS-P-littoralis_Contig755:80939..810811680791559.9927766-CDS-P-littoralis_Contig755:80939..81081Pylaiella littoralis U1_48CDSP-littoralis_Contig755 80940..81081 +
1680791560.0049639-CDS-P-littoralis_Contig755:81907..824131680791560.0049639-CDS-P-littoralis_Contig755:81907..82413Pylaiella littoralis U1_48CDSP-littoralis_Contig755 81908..82413 +
1680791560.015751-CDS-P-littoralis_Contig755:82983..832111680791560.015751-CDS-P-littoralis_Contig755:82983..83211Pylaiella littoralis U1_48CDSP-littoralis_Contig755 82984..83211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig755.19.1prot_P-littoralis_Contig755.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig755 80940..83211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig755.19.1

>prot_P-littoralis_Contig755.19.1 ID=prot_P-littoralis_Contig755.19.1|Name=mRNA_P-littoralis_Contig755.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=292bp
RFRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKVRLKMSLHLD
GPPDTRQGQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEGM
DCYRKLGSTGAIGSTDVTHVRWGMCPFTLGRSFTGKEGFPILAFEVTVDH
AGRAIGITQGFTGATNDKTTVRYDAAVQTIRNNKVCKDREYKLRKADGTE
FTRKGCFLIVDNGYHEWVTPRAPSKYPGDVDDAAFSKMLESVRKDVECFF
GILKGRFRILKLRLTYHCREDADNIFFTCCILHDMLHSIDGM
back to top

mRNA from alignment at P-littoralis_Contig755:80940..83211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig755.19.1 ID=mRNA_P-littoralis_Contig755.19.1|Name=mRNA_P-littoralis_Contig755.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2272bp|location=Sequence derived from alignment at P-littoralis_Contig755:80940..83211+ (Pylaiella littoralis U1_48)
CGCTTTCGCGTGCCTCACGCCTTCTTCCTGAGGTTGGTGGAGCTGTCGAG GGAGAAGAAGTGGTTCTCAGACGGAGGAGCGGATGCAGCAGGCCGTGAGG GTATCCCAGTAGAGCTCAAGGTGCGCTTGAAAATGTCACTTCGTACGAAG CATAACATACTGGAAAAGAAGATAGATGGTATGTGTACAAGGACAAAATA CAGCAGCTTTCCACTGCTGTACGTCACATAACTGCTGTCCACACACCGCC GTCCCCCTCATGACTGCAGCACAACTGCTGCACCTGATGAAAGTCTGCAT GCCTTTTGGGGCCGGTATATCTGTGAAGCACTTGCAGCTGTAGGGTATGC GAAACCAATCAAGTGCGCAACGATTATTGTGGGTCGACACGACGAGGACT AGCGAATGAACCTATTCTGGATAACAAAGTGCCGCAGACGGATATCACCA CAGCAGTGTGTGTTGCTGATGCTGCCGAAGATACCGCTGCAGATTTTTGG GTACTCTTCTGTGCCTCACCCCTGGGTCGGTGGTTATTACGAGGTACTTT TATTCCGAACCTTTCTTGATGGGTCGTTTCGGTTCGAGTGGATGCGAAAA CACGGGAATGCAACCATGCATGCCTGCTGTACTGCTGTAGGCTGGCGTGC AGAATAGATGGGATGGCAACACAACACAACTGGTTTTATCACGCTTTCAC GTAAAAAAAACATGCCGTTGCTGCTCCACCACGTGACGCTATTGAGACAC AACAGCTGTCACGATATGTGTATGTGAAAATCAAAACATCATCCGTAATA AGAAATCATGTATCTGCCTGATTCGTATACACGGACTGCTTAAAATGGTA GTTGTCCAGCCGAGCGAATCGAGCAACAGCAACTAGCTGACTAAAAGACA CTCCCGCCCCCGCCCTTTTCTCCCCGCCGCCGCGCGTGCTCCCCCTCCCC CCTGACATTATTCGACAGATCTTGACGGCCCTCCAGATACTCGGCAGGGG CAACTGTCATTAATGAGCAAATCGATGGCGGCAGCAACGTTCCACAAGTT CTGCAAGAACTTCGCGAAGGAGATGTTCGAGGAGCATATCTACCTTCCAA CAGGAACGTACCAAGACGAAGGGATGGACTGCTACCGCAAACTGGGTTCT ACTGGAGCAATCGGTTCTACCGACGTCACTCACGTCCGCTGGGGCATGTG TCCGTTCACCCTTGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCCAATCC TGGCGTTCGAGGTTACCGTCGACCACGCGGGGCGCGCCATTGGCATCACC CAAGGGTTCACCGGTGCGACCAACGACAAGACGACCGTCCGCTACGACGC AGCCGTACAGACCATCAGGAACAACAAAGTGTGCAAGGATCGAGAGTACA AGCTCAGGAAGGCGGATGGCACCGAGTTCACCCGGAAAGGATGCTTTTTG ATCGTCGACAACGGCTATCACGAGGTGAGTGTATTGGGGGCGTGGGGAGT AGTAGAATATCCGAACGAAGTGCATGCTCCGTAACGCTTCGGGTTGATGT GAAGCCCGAAAAAAGCACGCCGGTACACCGAAAGCAGACCAATGCCATAT TTGTCGGTGCTGAATGAGGATCTTTATGGCATGTCGGCCCCGTGCATCGG GCGTCGACCTTACGCAGCGGCACACCAGGGTAAAAAACGTGTTGCCGCTT CGCGTTCCTTCTATTCGTAATTGTTTTTGTGCTGGTTCCGTTTGGACGGT TGCGTTCACTTTCTTACATTTCGAGCATACATTACCCCATTTATAACACC AAAGGCTTTAACTAACAAATCTGATCAGGGGTGGTCAGATGGCAAATATT GTACTTCGAAGTACGAAGTTGTAGGCATCTGTGTTGTCCACATGTCCACA CGGTTCCTGGTTCCTCCCGAGGAGTTTGATTGTGAACATATGTGCGTCGG GGCCTGAGGTATCCAGAGCCTTTCCGTAGCTCACCAGTCGTCCCTTACGA CCCCCCCCCTGCTACTGTTGTGCCGTCGTGTGCCAAATTAACAGTGGGTC ACCCCCAGGGCCCCATCGAAGTACCCGGGTGACGTGGATGACGCGGCCTT TTCCAAGATGCTTGAGAGTGTGCGCAAGGATGTGGAGTGTTTCTTCGGCA TTCTGAAAGGGCGCTTCAGAATCCTGAAGCTCCGCCTGACCTACCACTGC AGGGAAGACGCCGATAACATCTTCTTCACGTGCTGCATTCTCCACGACAT GCTCCACTCCATCGACGGCATG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig755:80940..83211+

>mRNA_P-littoralis_Contig755.19.1 ID=mRNA_P-littoralis_Contig755.19.1|Name=mRNA_P-littoralis_Contig755.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=876bp|location=Sequence derived from alignment at P-littoralis_Contig755:80940..83211+ (Pylaiella littoralis U1_48)
CGCTTTCGCGTGCCTCACGCCTTCTTCCTGAGGTTGGTGGAGCTGTCGAG
GGAGAAGAAGTGGTTCTCAGACGGAGGAGCGGATGCAGCAGGCCGTGAGG
GTATCCCAGTAGAGCTCAAGGTGCGCTTGAAAATGTCACTTCATCTTGAC
GGCCCTCCAGATACTCGGCAGGGGCAACTGTCATTAATGAGCAAATCGAT
GGCGGCAGCAACGTTCCACAAGTTCTGCAAGAACTTCGCGAAGGAGATGT
TCGAGGAGCATATCTACCTTCCAACAGGAACGTACCAAGACGAAGGGATG
GACTGCTACCGCAAACTGGGTTCTACTGGAGCAATCGGTTCTACCGACGT
CACTCACGTCCGCTGGGGCATGTGTCCGTTCACCCTTGGCCGTTCTTTCA
CGGGCAAGGAGGGGTTTCCAATCCTGGCGTTCGAGGTTACCGTCGACCAC
GCGGGGCGCGCCATTGGCATCACCCAAGGGTTCACCGGTGCGACCAACGA
CAAGACGACCGTCCGCTACGACGCAGCCGTACAGACCATCAGGAACAACA
AAGTGTGCAAGGATCGAGAGTACAAGCTCAGGAAGGCGGATGGCACCGAG
TTCACCCGGAAAGGATGCTTTTTGATCGTCGACAACGGCTATCACGAGTG
GGTCACCCCCAGGGCCCCATCGAAGTACCCGGGTGACGTGGATGACGCGG
CCTTTTCCAAGATGCTTGAGAGTGTGCGCAAGGATGTGGAGTGTTTCTTC
GGCATTCTGAAAGGGCGCTTCAGAATCCTGAAGCTCCGCCTGACCTACCA
CTGCAGGGAAGACGCCGATAACATCTTCTTCACGTGCTGCATTCTCCACG
ACATGCTCCACTCCATCGACGGCATG
back to top