mRNA_P-littoralis_Contig755.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig755.17.1
Unique NamemRNA_P-littoralis_Contig755.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: D7FXJ9_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ9_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 2.890e-103
Identity = 162/258 (62.79%), Postives = 191/258 (74.03%), Query Frame = 1
Query:   46 NAEEAKDNLRRALEASGGSTLGDEVQAAAEVLSNFNPTPSPARAWRLNSGSWTSLGQDFKGTTRTADGVECTLGRLAFNIFEPVDLLVLITDTVNVIGPREKNAAPEEETLYKICIQWVARDGSGLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLA--ERKAKQLMLKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVVTR 813
            +AE AK NLR AL  SGGSTL + V AA EVL+NFNPT SPA+AW L+SG W S+G+DFKGTTRT DGVECTLGRL FNIFEPV+L VLI    N IG R +NA P  E+ Y I  +WVARDGSGL+G VE  G C EDPS P+R+ V+FT G IEP EGQDLDAWRKVIG++       D  G ++  PL+  + KA +LMLK  FGF+GPA  LGPRGELSY+MKR+P G LDI+Y+D+EMRV+RG    LVVV R
Sbjct:   52 SAEAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVR-------DVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 302          
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: A0A835ZKX0_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKX0_9STRA)

HSP 1 Score: 156 bits (394), Expect = 5.290e-41
Identity = 103/260 (39.62%), Postives = 134/260 (51.54%), Query Frame = 1
Query:   49 AEEAKDNLRRALEASGGSTLGDEVQAAAEVLSNFNPTPSPARAWRLNSGSWTSLGQDFKGTTRTADGVECTLGRLAFNIFEPVDLLVLITDTVNVIG--PREKNAAPEEETLYKICIQWVARD---GSGLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLAERKAKQLMLKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVVTR 813
            A +AK+ L + L+A+ G T  D V  A + LS  NPT   A    L  G++ + G +F    R   G ECTLGRLAFN+FEP  L V IT  VN +   P E+      E  Y +   +VAR    G  L+G V   G+C  D    +RLRV F  G + P +GQDL  W  V   +  K        E+   PL  +K   LMLK   GF+ PA +   +G   Y M R P G LDILY+DD +RV+RG+   +VVV R
Sbjct:   58 ARDAKEELAKQLQANEGDTKNDAVAVAVDALSKTNPTTDGALQRELLKGAFATTGFNFPDGKRGPLGWECTLGRLAFNLFEPTKLPVSITHIVNTLEDVPAERQGDRPGELTYDLVNSFVARSPESGVELRGEVAVSGVCWPDSKDANRLRVAFGAGELRPAQGQDLAEWEAVFKPREGK--------EKPRVPLG-KKLTNLMLKLFMGFQPPADA--GQGVQRYTMNRPPEGYLDILYLDDALRVTRGNRGSIVVVER 306          
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: A0A1Z4N4X8_9CYAN (PAP_fibrillin domain-containing protein n=5 Tax=Nostocales TaxID=1161 RepID=A0A1Z4N4X8_9CYAN)

HSP 1 Score: 140 bits (354), Expect = 8.470e-36
Identity = 96/272 (35.29%), Postives = 144/272 (52.94%), Query Frame = 1
Query:   34 AVDTNAEEA-KDNLRRALEASGGSTLGDEVQAAAEVLSNFNPTPSPARAWRLNSGSWTSLGQ-DFKGTTRTADGVEC-TLGRLAFNIFEPVDLLVL---ITDTVNVIGPREKNAAPEEETLYKICIQWVARDGS--GLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLAERKAKQLM----LKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVVTR 813
            AV+T   +A K  LR+AL ASGG+T   EV AA E L + NP  +PAR+  L   +W  +   +F G  + ADG  C TLGRLAFN+F+P  L V    ++  V ++G  E+++       + I +++   D S   L G V  +G+C         L+V+FT G ++P + Q+L+ W+ V G Q P                A R  K ++    L   FG   P G     GE+S+ M+R+P G L+ILY+D+E+R++RG  E ++V  R
Sbjct:    2 AVNTKTSQAAKTALRQALAASGGNTKDKEVIAAIENLQSLNPITAPARSDTLLDSNWLLISAPNFPGGEQLADGSFCYTLGRLAFNMFQPTGLKVTLQRVSQPVFLLGNGEQHS-------HDIVVEFTTIDESVPKLSGIVRNQGVCQV--VSDTTLQVEFTGGILQPQDNQNLEEWKAVFGNQQPS---------------ARRSFKDILMSGFLNLMFGLVPPQGMDADTGEISFTMRRSPKGRLEILYVDEELRITRGEREAILVSER 249          
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: UPI001686A008 (fimbrial protein n=1 Tax=Richelia sinica TaxID=1357545 RepID=UPI001686A008)

HSP 1 Score: 134 bits (337), Expect = 2.520e-33
Identity = 92/264 (34.85%), Postives = 138/264 (52.27%), Query Frame = 1
Query:   37 VDT-NAEEAKDNLRRALEASGGSTLGDEVQAAAEVLSNFNPTPSPARAWRLNSGSWTSLGQ-DFKGTTRTADG-VECTLGRLAFNIFEPVDLLVLITDTVNVIGPREKNAAPEEETLYKICIQWVARDGS--GLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLAERKAKQLMLKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVVTR 813
            VDT N   AK  LR+AL A GG+T  + V AA   L   NPTP+P  + +L   +W  +    F    + ADG    TLGRLAFN+F+P  L V+I      +    +     E+  + I +++   D S   L+G V   G+C   P+    L+V+FT G + P +   ++ WR+V G Q          G+ E++ L E K +  +LK  FG   P G     GE+ + MKR+P G+L+ILY+D+E+R++RG    ++V  R
Sbjct:    3 VDTGNVAAAKAALRQALTACGGNTKDETVLAAITNLQTLNPTPAPTHSGQLLDSNWLLISAPSFPQGEQLADGRFAYTLGRLAFNMFQPTKLRVVIDRVFQPV----RYLGQGEQQSHDIVVEFTTIDESVPQLRGIVRNLGVCQ--PASDTALQVQFTGGVLTPQDMGQIEEWRRVFGEQ----------GKPEETSLKE-KFQTWLLKLMFGLVPPEGMNLDTGEIRFTMKRSPKGNLEILYLDEELRITRGEKGTVLVCER 249          
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: A0A6B3MA84_9CYAN (Fimbrial protein n=1 Tax=Symploca sp. SIO2E9 TaxID=2607812 RepID=A0A6B3MA84_9CYAN)

HSP 1 Score: 132 bits (331), Expect = 1.910e-32
Identity = 92/264 (34.85%), Postives = 135/264 (51.14%), Query Frame = 1
Query:   37 VDTN-AEEAKDNLRRALEASGGSTLGDEVQAAAEVLSNFNPTPSPARAWRLNSGSWTSLGQ-DFKGTTRTADG-VECTLGRLAFNIFEPVDLLVLITDTVNVIGPREKNAAPEEETLYKICIQWVARDGS--GLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLAERKAKQLMLKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVVTR 813
            VDT   E AK  LR+AL ASGG+T  + V AA + L+  NPT +PAR+  L    W  +   +F G  +  DG    TLGRLAFN+F+P  L ++I   +  +   E     +++  + I +++   D S   L G V+ +G+C   P     L+VKFT G + P EG ++  W+ V G Q   G  +            + K      K  FG   P       GE+S+ M R+P GSL+ILY+D E+R++RG+   L+V  R
Sbjct:    4 VDTRKCEAAKIALRQALAASGGNTKDEAVIAAIDNLTQLNPTTAPARSETLLDSQWLLINAPNFPGGKQLPDGKFTYTLGRLAFNMFQPTQLKLVIDRVLQPVRLLEN----KQQRSHDIVVEFTTIDESFPKLSGIVKNQGVCH--PISDTLLQVKFTGGTLAPQEGMNIKDWQAVFGKQHQPGKKS-----------WQEKLMSGFFKLIFGLVPPKAMNPDTGEVSFTMNRSPRGSLEILYLDQELRITRGNKGTLLVSER 250          
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: UPI00146A6814 (fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 TaxID=2546229 RepID=UPI00146A6814)

HSP 1 Score: 130 bits (328), Expect = 5.890e-32
Identity = 88/257 (34.24%), Postives = 130/257 (50.58%), Query Frame = 1
Query:   52 EEAKDNLRRALEASGGSTLGDEVQAAAEVLSNFNPTPSPARAWRLNSGSWTSLGQ-DFKGTTRTADGV-ECTLGRLAFNIFEPVDLLVLITDTVNVIGPREKNAAPEEETLYKICIQWVARDGS-GLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLAERKAKQLMLKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVVTR 813
            ++AK  L +AL+A GG+     V AA   L+  NPTP+PA+A     G W  +    F G    ADG    TLGRLAFN+F+P  L ++I      + P    A       + I + +   D    L+G V   G+C   P+  ++L+V+FT G +EP    D D W +V G       D DAS      P  + + + L+LK  FG   P       G + +QM+R+P G L+ILY+DD++R++RG    ++V  R
Sbjct:   15 QQAKAALYQALQAHGGNPAQAPVAAAIARLATLNPTPAPAQATDRLEGDWRLISAPSFPGGELLADGCYSYTLGRLAFNMFQPQTLKLVIDQVSQPVWPIADGA----HHTHDIVVDFTTLDLEVPLQGRVRNLGICQ--PATANQLQVQFTGGVLEPAVDSDRDHWHQVFG-------DPDASPR----PGLKARLQGLVLKLMFGLVPPKAMAADTGRIEFQMRRSPKGRLEILYLDDDLRITRGEKGTILVCDR 254          
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: A0A6B3N4N3_9CYAN (Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6B3N4N3_9CYAN)

HSP 1 Score: 130 bits (327), Expect = 7.250e-32
Identity = 89/267 (33.33%), Postives = 135/267 (50.56%), Query Frame = 1
Query:   52 EEAKDNLRRALEASGGSTLGDEVQAAAEVLSNFNPTPSPARAWRLNSGSWTSLGQ-DFKGTTRTADG-VECTLGRLAFNIFEPVDLLVLITDTVNVIGPREKNAAPEEETLYKICIQWVARDGS--GLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLAERKAKQLMLKEKF---------GFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVVTR 813
            E AK  LR+AL A+GG+T  + V AA + L+  NPT +PAR+  L    W  +   +F G  +  DG    TLGRLAFN+F+P  L ++I   +  +   E     +++  + I +++   D S   L G V  +G+C   P    +L+VKFT G + P EG ++  W++V G Q                    R++ Q   +E+F         G   P       GE+S+ M R+P GSL+ILY+D+EMR++RG    L+V  R
Sbjct:   10 ETAKTALRQALAANGGNTKDEAVIAAIDNLTQLNPTTAPARSETLLDSEWLLINAPNFPGGKQLPDGKFTYTLGRLAFNMFQPTQLKLVIDRVLQPVRLLEN----KQQRSHDIVVEFTTIDESFPKLTGIVHNQGVCH--PISDTKLQVKFTGGTLAPQEGTNIKDWQEVFGKQ--------------------RQSSQKSWQERFISGFFRLMFGLVPPQAMNPDTGEVSFTMNRSPKGSLEILYLDEEMRITRGEKGTLLVCQR 250          
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: A0A352ALH8_9CYAN (Fimbrial protein n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352ALH8_9CYAN)

HSP 1 Score: 130 bits (327), Expect = 7.440e-32
Identity = 88/266 (33.08%), Postives = 137/266 (51.50%), Query Frame = 1
Query:   37 VDTNAEE---AKDNLRRALEASGGSTLGDEVQAAAEVLSNFNPTPSPARAWRLNSGSWTSLGQ-DFKGTTRTADGVEC-TLGRLAFNIFEPVDLLVLITDTVNVIGPREKNAAPEEETLYKICIQWVARDGS--GLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLAERKAK--QLMLKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVV 807
            +D+ A+E   AK  L  AL   GG T  + V  A E L + NPTP+PAR   L  G W  +   +F      ADG    TLGRLAFNIF+P  L ++I   +  + P  +      +  + I +++   D +   L+G V  +G+CS  P   + L+V+FT G + P +  + +AW  + G Q+              SP    K K   L+L+  FG   P G     G +S++M+R+P G L +LY+D+++R++RG  +G+V+V
Sbjct:    1 MDSQAQERKTAKTRLTEALNTYGGDTKHESVATAIECLVSLNPTPAPARCEALRDGQWLLISAPNFPDGELRADGKYVYTLGRLAFNIFQPTSLKIVIDRVIQPVFPISQTG----KQTHDIIVEFTTADENITPLQGIVYNKGICS--PVNGNILQVQFTGGELVPRDQTNREAWNAIFGEQAK-------------SPTIGLKQKLMTLILRMIFGIVPPQGMEAETGRVSFKMQRSPKGKLKLLYLDEDLRITRGE-QGMVLV 246          
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: UPI00168986C2 (Fimbrial protein n=3 Tax=Pseudanabaenales TaxID=2881377 RepID=UPI00168986C2)

HSP 1 Score: 128 bits (322), Expect = 4.230e-31
Identity = 89/255 (34.90%), Postives = 127/255 (49.80%), Query Frame = 1
Query:   61 KDNLRRALEASGGSTLGDEVQAAAEVLSNFNPTPSPARAWRLNSGSWTSLGQD-FKGTTRTADGVEC-TLGRLAFNIFEPVDLLVLITDTVNVIGPREKNAAPEEETLYKICIQWVAR--DGSGLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLAERKAKQLMLKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVVTR 813
            KDNLR AL    G      V    E L+  NPTP P +  +L  G+W  +    F    R ADG  C TLGRLAFN+F+P DL V+I      + P E+   P + T + I + +V    +   L+G V   G+C   P+    L+V+FT G +EP    DL  W  +   ++ K   +        S + +    QL LK  FG   P       G + +QM+R+P GSL ILY+D+E+R++RG  E ++V  R
Sbjct:   17 KDNLRAALTTHDGDPRHPSVIEIIENLATLNPTPVPTQTSQLLDGNWQLISAPIFPDGKRLADGTYCYTLGRLAFNMFQPQDLTVVIQQVFQPVLPMEE---PMQRT-HDIVVDFVIAHPNNPSLRGTVRNLGICK--PASDTVLQVQFTGGVLEPAADTDLQQWNAIF--ENSKAPTH--------SSIKDWVQSQL-LKLMFGLVPPKEINKETGRIEFQMRRSPKGSLTILYLDEELRITRGQRETVLVCER 254          
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Match: A0A6H5JYC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.940e-31
Identity = 78/184 (42.39%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  328 NVIGPREKNAAPEEETLYKICIQWVARDGSGLKGFVEARGLCSEDPSKPDRLRVKFTYGFIEPGEGQDLDAWRKVIGLQSPKGADNDASGEEEDSPLAERKAKQLMLKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSEGLVVVTRD*HISYIIAVVCHSRRISADLC 879
            N  G R + A P  E+ Y I   WVARDG+GL+G VE                +  TY      EGQDLDAWR VIG++     D + + E+    + + KA +LMLK  FGF GPA +LG RGELS +MKR+PSG  ++LY+D+E+ V+RG    LVVVTR         V+   R  S D C
Sbjct:    3 NTCGDRPEPADPAYESPYDISTHWVARDGNGLRGRVE----------------IAETY------EGQDLDAWRNVIGVR-----DTEGTKEKGRLSMLKEKAAKLMLKVVFGFRGPADNLGRRGELSCEMKRSPSGHFEVLYLDEEIWVTRGHKGTLVVVTR---------VLFFYRLSSGDFC 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig755.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXJ9_ECTSI2.890e-10362.79PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A835ZKX0_9STRA5.290e-4139.62PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
A0A1Z4N4X8_9CYAN8.470e-3635.29PAP_fibrillin domain-containing protein n=5 Tax=No... [more]
UPI001686A0082.520e-3334.85fimbrial protein n=1 Tax=Richelia sinica TaxID=135... [more]
A0A6B3MA84_9CYAN1.910e-3234.85Fimbrial protein n=1 Tax=Symploca sp. SIO2E9 TaxID... [more]
UPI00146A68145.890e-3234.24fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 Ta... [more]
A0A6B3N4N3_9CYAN7.250e-3233.33Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 ... [more]
A0A352ALH8_9CYAN7.440e-3233.08Fimbrial protein n=1 Tax=Cyanobacteria bacterium U... [more]
UPI00168986C24.230e-3134.90Fimbrial protein n=3 Tax=Pseudanabaenales TaxID=28... [more]
A0A6H5JYC1_9PHAE4.940e-3142.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig755contigP-littoralis_Contig755:68854..73575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXJ9
PFAMsPAP_fibrillin
Model size1174
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons5
Evalue2.56e-18
EggNOG OGs28N1U@1|root,2S7IC@2759|Eukaryota
DescriptionPAP_fibrillin
Cds size177
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig755.17.1prot_P-littoralis_Contig755.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig755 69209..70078 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791559.876278-UTR-P-littoralis_Contig755:68853..692081680791559.876278-UTR-P-littoralis_Contig755:68853..69208Pylaiella littoralis U1_48UTRP-littoralis_Contig755 68854..69208 -
1680791559.9173326-UTR-P-littoralis_Contig755:70078..702341680791559.9173326-UTR-P-littoralis_Contig755:70078..70234Pylaiella littoralis U1_48UTRP-littoralis_Contig755 70079..70234 -
1680791559.9282997-UTR-P-littoralis_Contig755:70836..711111680791559.9282997-UTR-P-littoralis_Contig755:70836..71111Pylaiella littoralis U1_48UTRP-littoralis_Contig755 70837..71111 -
1680791559.940465-UTR-P-littoralis_Contig755:71658..717341680791559.940465-UTR-P-littoralis_Contig755:71658..71734Pylaiella littoralis U1_48UTRP-littoralis_Contig755 71659..71734 -
1680791559.9559073-UTR-P-littoralis_Contig755:73440..735751680791559.9559073-UTR-P-littoralis_Contig755:73440..73575Pylaiella littoralis U1_48UTRP-littoralis_Contig755 73441..73575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791559.8885868-CDS-P-littoralis_Contig755:69208..693761680791559.8885868-CDS-P-littoralis_Contig755:69208..69376Pylaiella littoralis U1_48CDSP-littoralis_Contig755 69209..69376 -
1680791559.9012082-CDS-P-littoralis_Contig755:70069..700781680791559.9012082-CDS-P-littoralis_Contig755:70069..70078Pylaiella littoralis U1_48CDSP-littoralis_Contig755 70070..70078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig755.17.1

>prot_P-littoralis_Contig755.17.1 ID=prot_P-littoralis_Contig755.17.1|Name=mRNA_P-littoralis_Contig755.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
MLKEKFGFEGPAGSLGPRGELSYQMKRAPSGSLDILYIDDEMRVSRGSSE
GLVVVTRD*
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mRNA from alignment at P-littoralis_Contig755:68854..73575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig755.17.1 ID=mRNA_P-littoralis_Contig755.17.1|Name=mRNA_P-littoralis_Contig755.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4722bp|location=Sequence derived from alignment at P-littoralis_Contig755:68854..73575- (Pylaiella littoralis U1_48)
CTGGGTGCATCGTCAAGTTCGACAGCAACCCCTGCCGTCGACACTAACGC CGAAGAGGCAAAGGATAACCTCAGGCGCGCGCTGGAGGCCAGTGGGGGTT CTACCCTAGGCGACGAGGTCCAGGCGGCTGCCGAGGTACAAGTAATACAA CAATCATGTTTTCTTCCTTCTGTCTTCTTGTCGTGTGTGTCGCAAGGAAG TCTCCTGTTCAATTTGGCGATGAATTGCACATCGGGTTTTTTGTCGATTG AGCATATCCACGAAGAAGTAGATGATCTTGACTTTTGCGAAATACTTTTT CACTGCCTGTAATCTGCCTCTGGGATTCGTCATTCTGGCAGCACAACTCA ACGACGGGGGTTGGGGGGGATGGGGTGGGGGCTTGGAGATTCCGAACCTC CCAACGGGGCCAGCCTTCTGACCTGACTATAACTCCGGGCCAAAACATTG GGGGGGGGATCAAGTGGGGGGGGCGAAAAACTCTGCAAGATATGATTTTC ATTTTTCAGATTTCACCGTCGTACGCACTTACTCGCCACACACAGTACAA CGTAGTTCCAGTAGTACACAGCGGTGTGGCACGCACGACGATCTCCAACT GTCATGTGTTGAGCCTCTGGTGTATGTCCACTCCGTGTCATCACGGGAGC TGCAACTATATACCTACCCGGTGTAGATGCTCGGAAACAATCGGTGCAAT TTGAAGCCAACCTGCTGTAGGACTGCTCTAAACAAAATATTGCACCAACC AGCACAGGAGAGCTTCTTCCCCCGATCCACTCTCTTCTGCAGAGCGTATG ATCCAGGCGAGTTGAAAGCACGCCCCGGTATATACCGCTTTACGGGGAGG ACGACACACTGTACTCTTTCTATGTGGGTGCCACGACCTCCGCCACAACA CGTGCAACACAAAAGCCAAGCCGCCATCACCAGCAGCAGCTGCAGCAGCA GCAGCAGCAGCAGTTTTGGGCACACACAACTCGCACCTCTCAGGTTCAAG CTCATCCACAGCCAGTCAGCGAATCAACGAAGCACGCGAGCGAGCATTTC GTTGAAAGCTGTTGAGTGCAGGCATCTGATGCTCGTCCGCAAGCTGCGCT GGCACGCAAAAAGCACGCAAAAGCTATTTCTCCTTTTTTCAGGCAGAGCA AGGTAACAAGGGGTATCACACAACAAGCAAGGTAACAAAAGGGGTTGTCA CACCAGTGCGAGGATGCAAATCTCCACCTACGGCCTCGGCGTGGCGTTTT GGTAGGGGAAAAAAATAGTAGTAGCCTTGGACGCTGGGGGGGAACGTAAT GTGTCCACTGCTGCTACTTTTGTCGCCTCCGTGCAGTCCCCGCCCCGCAC TCCCCGCGGTGAAAATCCCTTTTTTCTTGCGAAACCAATTACGTTTTCAA CCAGTAGGTACAGCTATCGTATGAACATATTCACGAGCATTTCTTCTTAA TTTATTCTCATAACTATTATTACCATCACGATCACTTTCATAATTACGAA GTACTAATTTTTTTCTTCGAAGTATTATTATCAGTATTATTATGTCTCTT GCCGTCCGACAACACGCTGACTGTCCAAAACTGATTCAAAACGTCCAAAA TCAATCACCGTCAAGCTCCTCTTCAAGGCTGACTGATCTCCGTCGTCAAG CGGGATTTCCTCCTTCCCAAGAGAGAAAATGAGTACACAGAACCCGAAAT TTGACAGCGAGACACCAGAATATACTTTTCGTCTCGGAAATCGGCCGCTC TGCCCAGGAACGGAAACGCCTCGAAATGGCTATGATTTCGTATCAACCCA TGTATGCGACCACTTAATGGTCTTCCCTGCCGCTCCATCAGGTGCTGTCA AACTTCAATCCCACTCCCTCCCCAGCTAGGGCGTGGCGTCTCAACAGCGG GAGTTGGACTTCCCTGGGTGAGAAACCCTACCAGTAGAGGGGAGGGGGCG GGGGCGGGGGCGGGGGCTGGAGGGACCCCGCGGCGAATCGAAATTATTGC CGTACGCGGACGGTTTGATATGTAGGTGGCGGTGCTATCCTCTAAATGTT GTGGAAAATATCATCAAGGTGCTCAGAGAGCATGCCTACACATACCATTT CCTCATCTTTGGGGCGCTTAATCCGGAGCGTCAATTACCACCTCGATGCA CCACAACAAGGCGCAGCATTGGAAGCGAATATAATGCGAGGACAGGCATC GATTCCGTTTGAGATGTTCGCTGATATGGAGGGTTCAGAGGCATGGGTCT GACCGTCCTTTTTTTTCTTGCACAGTTCATTTTCAATCCTGACCTCCATC CGCGCTTGCCCACTTACTCGATTCCCCGCTAAAGTTGTGCAGTCTTGGTC CTTTCCCCAACTATAACCTCGCATCTCCGGCTAACCCCATCACAACCTAG CCTTGACGATGACCTCGAAGCTACCTAATATGCGCTCTATCCCCGTCCCC TGACCCGCACACAGGCCAGGACTTCAAAGGCACGACGCGCACTGCAGACG GTGTCGAGTGCACCCTCGGTCGCCTGGCCTTCAATATCTTCGAGCCCGTC GACCTCCTCGTCCTCATCACCGACACCGTGAATGTCATCGGCCCCCGCGA AAAAAACGCTGCACCGGAGGAGGAAACCCTCTACAAGATTTGCATCCAAT GGGTGGCCCGCGACGGGAGCGGGCTCAAGGGGTTCGTGGAAGCCAGGGGG TTGTGCTCGGAAGACCCTTCTAAGCCGGACCGTCTCCGGGTGCGTTTGCG TTTTCTGAAAGTATATCTTCGAGAGCTCTGCCCAGAATAGACGTGCCGCT GGGAAGATCTCGTCGAAATCGAGATGTGGTCACGTGACGTTTGGCATTTT CTCCAGCGCGGGGGTATTCTTCGAGTTTTGGATTTCGATCAGCCCAGTAG GGTCCGGTGACATTTCACCGTCGTCGTCGTCGCCGCCGTACGTATGATAC GGTATCCGGTAAATAGTTGAAAGGCGCGGAGTCGGGAAGTACCACAGAAA CCTTCCATCCCTACCATCAAGCTCGCGCGCCCCCCACCACTATATCGTAC GAATGCTGCCTGGCTTTGGCGTCTGCTCAATAGAGGGTTACGACTGTTCT TTTTGTGGGTGGTCCCGTACTGTTTACCATTTTGAGTTGAGCTGGTGCCA GACCACGGAATAAAGTCACTCCTCTCGCATACGGGTCGGGTCGGGACAGG GGTGAGGCAGGTTTTCATACGAGCACTTTTACAGCGGTAACAGCAACAAC AGTGTCTCAGCGACGGCAACCGAAACACAACAATGTCGGACTTGGGTCGT GCATCCCCCCCCCTGGAAAATTATCGCCACGAGAGCAACAGGTAAAGTTT ACGTACGGATTCATCGAGCCGGGCGAGGGTCAAGACCTGGACGCCTGGCG TAAAGTGATCGGTTTGCAGAGCCCGAAGGGGGCAGACAACGACGCCAGCG GCGAGGAGGAAGACTCACCGCTGGCGGAGCGCAAGGCGAAACAGCTCATG CTGAAGGTGATACCCCAAGGAATTGTTGCGCGAGCCTCTGTTGCTTCCAC CGATGGCCTTCACGGAGTTCCGTGGAAAAATGAAATAGTGTCACGACACG GTCGGGCACAGCAGTTGAAAAACATTTGTTCACGAAAAATTAGGTGAATA ATATAACGACGAAAAGTAGGACACGACAACGCGAAATCGGCACACGTAGC AGACACAACAATGACCTGGCTCTTTAACTTTTTTGTTCATCTGGTTCAAC TTGCGTCGAACCACAGCCTCCTCTTAATTGTACTTGTGATACACTTAGTT CTGTTCTGGCAGCCCGCTCACTGTTTGCAGTATTGAACGCGTACGGCGCA CGTATGCATCACCAGTTTTCCAATCTAGTTTGGGGCCGGAACGAGCGTTG CTTCCGTTGAGATTCCTAACCACCCCTCTCTGCTGCTACCGTGCCTTTTG CTAGGGCATTCAGTGGAACGAAACAAATCGCAATGCAGGAACGATATACT TTTGCCTCTCTTTCTTTCTCTCTCTATTTTGTCTCCCTTTCGCGCCACAG CAAATTACATTATTGCGTGCAAATACAAAACACTGCGACACGAAACTACA TGAATTTCCCGTGCTTCGCCCTGCCCTTTGCCCTTGTCCTCTGCGCTGTC AAATACTGCTGTTGGCATCTCTGTATACTATTTTTTTTTCTAAACAAAGG AGAAGTTCGGATTTGAAGGGCCAGCCGGCTCTCTCGGTCCCCGCGGAGAG CTGTCTTACCAGATGAAACGCGCTCCGTCCGGATCTCTGGATATCCTTTA CATCGACGACGAGATGAGAGTTTCGCGCGGGAGCTCAGAAGGCCTCGTGG TCGTCACGCGCGATTGACACATTTCGTATATCATAGCCGTCGTATGTCAT AGCCGACGTATATCAGCCGATCTATGTATGTGAGGTTCGCACTTCCTTGG TGTTGGTTTGTCAAGCAGTAAAACCTCGAGAGAGGAACGGATCAAACGTC CGCACTCTTCTGTGATCACGGCACGTCGCCCTGGTTGATTTTTGCGCATG GATCCTCCCGTTCTCTTCATCAAGAGCTTTACTAATCTCGCAGGCGGAAG CGAAGCACACGTTCGTTGTCGGTGGTGTCCTCCTTCTCTTGTGAAAGTTT TTAGTGGGACTGCTGCACGTAATATTTTCATCCGGGGGCAATCTCTGGTT GCCACCACGAGCACCGAGAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig755:68854..73575-

>mRNA_P-littoralis_Contig755.17.1 ID=mRNA_P-littoralis_Contig755.17.1|Name=mRNA_P-littoralis_Contig755.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig755:68854..73575- (Pylaiella littoralis U1_48)
ATGCTGAAGGAGAAGTTCGGATTTGAAGGGCCAGCCGGCTCTCTCGGTCC
CCGCGGAGAGCTGTCTTACCAGATGAAACGCGCTCCGTCCGGATCTCTGG
ATATCCTTTACATCGACGACGAGATGAGAGTTTCGCGCGGGAGCTCAGAA
GGCCTCGTGGTCGTCACGCGCGATTGA
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