mRNA_P-littoralis_Contig755.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig755.16.1
Unique NamemRNA_P-littoralis_Contig755.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 3.520e-49
Identity = 86/157 (54.78%), Postives = 111/157 (70.70%), Query Frame = 1
Query:    1 KEYRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGDLSETRRRKRERDA 468
            + Y KL   H  FL RCIGW KR+R+DRPLSYA+ALI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY++V+D A  F  +W ++E + S   +R RE +A
Sbjct:   36 EHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQEAETSAKHQRAREAEA 192          
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 5.210e-49
Identity = 83/147 (56.46%), Postives = 105/147 (71.43%), Query Frame = 1
Query:    7 YRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGDLSETR 444
            Y KL   H  FL RCIGW KR+R+DRPLS+A+ALI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ E L AF++  DK+ G W+ SAK  + WY++V+DGA  F  +W ++E + S  R
Sbjct:   11 YTKLNGTHRQFLTRCIGWSKRKRSDRPLSHAQALIQAGCEETIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKR 157          
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5K1C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C5_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.070e-48
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   13 KLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGDLSE 438
            KL   HH FL RCIGW KR+R+DRPLSYA+ALI AGC E++EAT+RKRRLCFAGFV RM D RLP   LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK ++ WY++V+DGA  F  +W ++E + +E
Sbjct:  125 KLNGTHHQFLSRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPTRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEATE 267          
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.670e-48
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    1 KEYRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGD 429
            + Y KL   H  FL RCIGW KR+R+DRPLSYA+ALI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF +  +K+ G W+ SAK  + WYD+++DGA  F  +W ++E +
Sbjct:  121 EHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAE 264          
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 4.780e-48
Identity = 86/153 (56.21%), Postives = 109/153 (71.24%), Query Frame = 1
Query:    1 KEYRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGDLSETRRRKR 456
            + Y KL   H  FL RCIGW KR+R+DRPLSYA+ALI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF +  +K+ G W+ SAK  + WYD+++DGA  F  +W ++E + S  R+R R
Sbjct:  330 EHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRAR 482          
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 5.080e-48
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    1 KEYRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGD 429
            + Y KL   H  FL RCIGW KR+R+DRPLSYA+ALI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF +  +K+ G W+ SAK  + WYD+++DGA  F  +W ++E +
Sbjct:  151 EHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAE 294          
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5KU62_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU62_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 9.170e-48
Identity = 85/154 (55.19%), Postives = 111/154 (72.08%), Query Frame = 1
Query:    1 KEYRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGDLSETRRRKRE 459
            + Y KL   H  FL RCIGW KR+R+DRPLSYA+ALI AGC E++EAT+R+RRLCF GFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK ++ WY++V+DGA  F  +W ++E + S  R+R RE
Sbjct:  287 EHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRQRRLCFGGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRARE 440          
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5L2N2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N2_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 9.920e-48
Identity = 86/157 (54.78%), Postives = 112/157 (71.34%), Query Frame = 1
Query:    1 KEYRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGDLSETRRRKRERDA 468
            + Y KL   H  FL RCIGW KR+R+DRPLSYA+ALI AGC E++EAT+RKRRLCFAGFV RM D RLPK   L  + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK ++ WY++V+DGA  F  +W ++E + S  R+R RE +A
Sbjct:  259 EHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKCMPLEAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRARETEA 415          
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5JYX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX0_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.320e-47
Identity = 85/158 (53.80%), Postives = 112/158 (70.89%), Query Frame = 1
Query:    1 KEYRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVA-RMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGDLSETRRRKRERDA 468
            ++Y KL   H   L RCIGW KR+R+DRPLSYA+ALI AGC E++EAT+RKRRLCFAGFV  RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY++++DGA     +W ++E + S  R+R RE +A
Sbjct:   34 EQYTKLNGTHLQVLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVVVRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKIEDGAAWLMRKWHRQEAEASAKRQRARETEA 191          
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.020e-47
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    1 KEYRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDDGARRFTDEWLKKEGD 429
            + Y KL   H  FL RCIGW KR+R+DRPLSYA+ALI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF +  +K+ G W+ SAK  + WYD+++DGA  F  +W ++E +
Sbjct:  241 EHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAE 384          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig755.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGF6_9PHAE3.520e-4954.78Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX67_9PHAE5.210e-4956.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1C5_9PHAE1.070e-4857.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE2.670e-4856.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD24_9PHAE4.780e-4856.21Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KB07_9PHAE5.080e-4856.94Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KU62_9PHAE9.170e-4855.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L2N2_9PHAE9.920e-4854.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JYX0_9PHAE1.320e-4753.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5T8_9PHAE4.020e-4756.94Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig755contigP-littoralis_Contig755:45280..45765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28377.ENSACAP00000022069
Model size486
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.32e-07
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata,49BMJ@7742|Vertebrata
DescriptionRibonuclease H protein
Cds size486
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791559.8437715-CDS-P-littoralis_Contig755:45279..457651680791559.8437715-CDS-P-littoralis_Contig755:45279..45765Pylaiella littoralis U1_48CDSP-littoralis_Contig755 45280..45765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig755.16.1prot_P-littoralis_Contig755.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig755 45280..45765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig755.16.1

>prot_P-littoralis_Contig755.16.1 ID=prot_P-littoralis_Contig755.16.1|Name=mRNA_P-littoralis_Contig755.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
KEYRKLRSAHHFFLLRCIGWKKRERTDRPLSYAKALITAGCNESVEATLR
KRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLE
AFDIVVDKKEGWEASAKRADEWYDRVDDGARRFTDEWLKKEGDLSETRRR
KRERDAAERQAL
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mRNA from alignment at P-littoralis_Contig755:45280..45765-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig755.16.1 ID=mRNA_P-littoralis_Contig755.16.1|Name=mRNA_P-littoralis_Contig755.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig755:45280..45765- (Pylaiella littoralis U1_48)
AAGGAGTACCGCAAGCTTCGGTCAGCCCACCACTTCTTCCTCCTTCGCTG CATCGGATGGAAAAAGAGGGAGAGAACAGACCGACCCCTCTCCTACGCCA AAGCCCTGATCACCGCGGGTTGCAACGAGAGCGTTGAGGCCACACTGCGC AAGCGGCGACTGTGCTTCGCAGGATTTGTTGCGCGCATGAGAGACGAGAG ACTCCCGAAAATTGCTCTCTTGGGAGAATTGCAGGGGGGAGCAAGGTATC TGGGGGGGCAAGAGTTTGACTGGCTGAGGCGAATGCGGGAGGACCTCGAA GCGTTCGACATCGTGGTCGACAAAAAGGAGGGGTGGGAGGCAAGTGCCAA GAGAGCTGACGAGTGGTACGACAGGGTCGACGACGGTGCGCGGCGGTTCA CGGACGAGTGGCTCAAGAAAGAGGGAGACCTATCAGAGACACGTCGACGG AAAAGAGAGAGGGACGCGGCTGAGAGGCAGGCCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig755:45280..45765-

>mRNA_P-littoralis_Contig755.16.1 ID=mRNA_P-littoralis_Contig755.16.1|Name=mRNA_P-littoralis_Contig755.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig755:45280..45765- (Pylaiella littoralis U1_48)
AAGGAGTACCGCAAGCTTCGGTCAGCCCACCACTTCTTCCTCCTTCGCTG
CATCGGATGGAAAAAGAGGGAGAGAACAGACCGACCCCTCTCCTACGCCA
AAGCCCTGATCACCGCGGGTTGCAACGAGAGCGTTGAGGCCACACTGCGC
AAGCGGCGACTGTGCTTCGCAGGATTTGTTGCGCGCATGAGAGACGAGAG
ACTCCCGAAAATTGCTCTCTTGGGAGAATTGCAGGGGGGAGCAAGGTATC
TGGGGGGGCAAGAGTTTGACTGGCTGAGGCGAATGCGGGAGGACCTCGAA
GCGTTCGACATCGTGGTCGACAAAAAGGAGGGGTGGGAGGCAAGTGCCAA
GAGAGCTGACGAGTGGTACGACAGGGTCGACGACGGTGCGCGGCGGTTCA
CGGACGAGTGGCTCAAGAAAGAGGGAGACCTATCAGAGACACGTCGACGG
AAAAGAGAGAGGGACGCGGCTGAGAGGCAGGCCTTG
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