mRNA_P-littoralis_Contig754.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig754.2.1
Unique NamemRNA_P-littoralis_Contig754.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig754.2.1 vs. uniprot
Match: D8LJ73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ73_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.450e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 3 
Query:  321 GMVVKDFLSIYAKELRDGKFWGVAHDLHALEV 416
            G+ ++DF SIYA ELR GKFWGVAHDLHAL V
Sbjct:  153 GLTLEDFFSIYASELRGGKFWGVAHDLHALGV 184
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BLAST of mRNA_P-littoralis_Contig754.2.1 vs. uniprot
Match: A0A6H5JCW2_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW2_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.290e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 3 
Query:  321 GMVVKDFLSIYAKELRDGKFWGVAHDLHALEV 416
            G+ ++DF SIYA ELR GKFWGVAHDLHAL V
Sbjct:  499 GLTLEDFFSIYASELRGGKFWGVAHDLHALGV 530
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig754.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ73_ECTSI1.450e-675.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCW2_9PHAE2.290e-675.00Endo/exonuclease/phosphatase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig754contigP-littoralis_Contig754:8481..9175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size417
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791558.129459-UTR-P-littoralis_Contig754:8480..85041680791558.129459-UTR-P-littoralis_Contig754:8480..8504Pylaiella littoralis U1_48UTRP-littoralis_Contig754 8481..8504 +
1680791558.1703086-UTR-P-littoralis_Contig754:9169..91751680791558.1703086-UTR-P-littoralis_Contig754:9169..9175Pylaiella littoralis U1_48UTRP-littoralis_Contig754 9170..9175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791558.1422138-CDS-P-littoralis_Contig754:8504..88161680791558.1422138-CDS-P-littoralis_Contig754:8504..8816Pylaiella littoralis U1_48CDSP-littoralis_Contig754 8505..8816 +
1680791558.1537902-CDS-P-littoralis_Contig754:9094..91691680791558.1537902-CDS-P-littoralis_Contig754:9094..9169Pylaiella littoralis U1_48CDSP-littoralis_Contig754 9095..9169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig754.2.1prot_P-littoralis_Contig754.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig754 8505..9169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig754.2.1

>prot_P-littoralis_Contig754.2.1 ID=prot_P-littoralis_Contig754.2.1|Name=mRNA_P-littoralis_Contig754.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MRLFRIDSEKRRFGGVWYRVCLRFLWSEGTMECHGVFMCVPLFFGRRINN
QSRFFPFTQRSIPLTQRSNIELHTQGTHCPKHFPAGFGPAPPRTDYPSWA
WSSKISCPFTRRSFATANFGASPTTCTP*
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mRNA from alignment at P-littoralis_Contig754:8481..9175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig754.2.1 ID=mRNA_P-littoralis_Contig754.2.1|Name=mRNA_P-littoralis_Contig754.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=695bp|location=Sequence derived from alignment at P-littoralis_Contig754:8481..9175+ (Pylaiella littoralis U1_48)
GATGTTGGATGTACTCGCAGCAGTATGCGATTATTTCGGATTGATTCAGA
GAAACGGAGATTTGGTGGAGTATGGTACAGGGTATGTTTGAGATTTTTGT
GGAGTGAGGGTACCATGGAGTGTCATGGAGTATTTATGTGTGTCCCCTTG
TTTTTTGGGCGCCGCATCAATAATCAATCACGTTTTTTCCCGTTCACACA
GCGAAGCATCCCGCTCACACAGCGAAGTAACATCGAGTTACACACTCAGG
GTACACATTGCCCAAAACATTTCCCGGCCGGATTCGGCCCAGCTCCACCC
CGTACGGATTATCCATCATGGGCATGGTCGTCAAAGGTGTGCCTACCTTC
TGCCTGGAACCTGGCGCCTAGCATAATAGCTTGACTCGTGGAAATGTTTT
TTCTTTTTGTTCAACTGTCGAAGTTACCTCTTCTTACGTCAAATCATCTC
CAGATTCTTGCTTACGCTTTATTTTGCTTCCGGCGCCCTGGTATCTCGCG
TGGGACCTGGGGCAGATTGTTTACAACAGTGATGTGCAGCAGTTTTTACC
ACGACTGTCAGCAACATCATAATTTCACTTTTTGCAACAATTCGTGGTGA
TCACGCGCGTGCAGATTTCTTGTCCATTTACGCGAAGGAGCTTCGCGACG
GCAAATTTTGGGGCGTCGCCCACGACTTGCACGCCCTAGAGGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig754:8481..9175+

>mRNA_P-littoralis_Contig754.2.1 ID=mRNA_P-littoralis_Contig754.2.1|Name=mRNA_P-littoralis_Contig754.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig754:8481..9175+ (Pylaiella littoralis U1_48)
ATGCGATTATTTCGGATTGATTCAGAGAAACGGAGATTTGGTGGAGTATG
GTACAGGGTATGTTTGAGATTTTTGTGGAGTGAGGGTACCATGGAGTGTC
ATGGAGTATTTATGTGTGTCCCCTTGTTTTTTGGGCGCCGCATCAATAAT
CAATCACGTTTTTTCCCGTTCACACAGCGAAGCATCCCGCTCACACAGCG
AAGTAACATCGAGTTACACACTCAGGGTACACATTGCCCAAAACATTTCC
CGGCCGGATTCGGCCCAGCTCCACCCCGTACGGATTATCCATCATGGGCA
TGGTCGTCAAAGATTTCTTGTCCATTTACGCGAAGGAGCTTCGCGACGGC
AAATTTTGGGGCGTCGCCCACGACTTGCACGCCCTAG
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