mRNA_P-littoralis_Contig753.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig753.33.1
Unique NamemRNA_P-littoralis_Contig753.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig753.33.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.630e-8
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKLLVD 159
             SLS  AR+K+PSLD FMD LD ++GKFPL  L +T FDM FP  AV L VD
Sbjct:  499 ASLSASAREKLPSLDTFMDNLD-ESGKFPLHGLMMTCFDMMFPDEAVDLFVD 549
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BLAST of mRNA_P-littoralis_Contig753.33.1 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.370e-8
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKLLVD 159
             SLS  AR+K+PSLD FMD+LD ++GKFPL    +T FDM FP  A+ L VD
Sbjct:   97 ASLSASAREKLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVD 147
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BLAST of mRNA_P-littoralis_Contig753.33.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.690e-8
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKLLVD 159
             SLS  AR+K+PSLD FMD+LD ++GKFPL    +T FDM FP  A+ L VD
Sbjct:  388 ASLSASAREKLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVD 438
[Close]
BLAST of mRNA_P-littoralis_Contig753.33.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.710e-8
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKLLVD 159
             SLS  AR+K+PSLD FMD+LD ++GKFPL    +T FDM FP  A+ L VD
Sbjct:  604 ASLSASAREKLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVD 654
[Close]
BLAST of mRNA_P-littoralis_Contig753.33.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 2.990e-5
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAV 144
             SLS  AR+K+PS+D FMD+LD ++GKFPL  L +   DM FP  AV
Sbjct:  429 ASLSASAREKLPSVDTFMDSLD-ESGKFPLHGLMMMCLDMMFPDEAV 474
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig753.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JJP9_9PHAE1.630e-861.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIE0_9PHAE5.370e-857.69DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNV0_9PHAE5.690e-857.69DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE5.710e-857.69HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5K2B4_9PHAE2.990e-555.32DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig753contigP-littoralis_Contig753:134263..134422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size161
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791558.091631-CDS-P-littoralis_Contig753:134263..1344221680791558.091631-CDS-P-littoralis_Contig753:134263..134422Pylaiella littoralis U1_48CDSP-littoralis_Contig753 134264..134422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig753.33.1prot_P-littoralis_Contig753.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig753 134264..134422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig753.33.1

>prot_P-littoralis_Contig753.33.1 ID=prot_P-littoralis_Contig753.33.1|Name=mRNA_P-littoralis_Contig753.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
EVSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKL
LVD
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mRNA from alignment at P-littoralis_Contig753:134263..134422-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig753.33.1 ID=mRNA_P-littoralis_Contig753.33.1|Name=mRNA_P-littoralis_Contig753.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=160bp|location=Sequence derived from alignment at P-littoralis_Contig753:134263..134422- (Pylaiella littoralis U1_48)
GAGGTTTCGTTGTCGCAGAAGGCGCGTGACAAGATGCCTTCGCTCGACGA
CTTCATGGATGCCCTTGACCCGGACACCGGCAAGTTTCCGCTGGAAGATC
TGACGCTGACTACATTCGACATGAACTTTCCGGTCGCGGCGGTGAAGCTC
TTGGTGGACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig753:134263..134422-

>mRNA_P-littoralis_Contig753.33.1 ID=mRNA_P-littoralis_Contig753.33.1|Name=mRNA_P-littoralis_Contig753.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig753:134263..134422- (Pylaiella littoralis U1_48)
GAGGTTTCGTTGTCGCAGAAGGCGCGTGACAAGATGCCTTCGCTCGACGA
CTTCATGGATGCCCTTGACCCGGACACCGGCAAGTTTCCGCTGGAAGATC
TGACGCTGACTACATTCGACATGAACTTTCCGGTCGCGGCGGTGAAGCTC
TTGGTGGAC
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