mRNA_P-littoralis_Contig753.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig753.26.1
Unique NamemRNA_P-littoralis_Contig753.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig753.26.1 vs. uniprot
Match: D7FH10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH10_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 1.100e-105
Identity = 165/250 (66.00%), Postives = 187/250 (74.80%), Query Frame = 1 
Query:  154 MGSLRLARSGAINQGVFTSASLTTDRRARVDAFVDRWHCRRSAQRSGQIFAGVLEHLAWRVRTRLLAAYLNRWRTSPAPLPRPPLRPKLFLLLDIRRRTALHKSFAGWSLLARQLSTDRGFARRKGIRILRLLGRREAGLKAAGIGRWRSYVRAARDLERRREACFEQWKFFVLLRRHDSSWGVERAMRILRRMWLHRLAFDRLRAWRSARAAARAGRDALAAAHVRGAWGSWRHAVALYYRDRIVRESW 903
            M SLRLAR+GAINQGVF S SL+ D  ARVDAFVDRWHCRRSA+RSG I A VLEHLAW VRTRLLA YL+RWR++ APLPR  LRPK FLL+D RRR  LHK+   W LL RQL  +R  ARRKG R+ R LGRREA L+AAG  RW       RD ERRR  CFE+WK FVLL +H+SSWGVERAMR+L R WL  LAF RL AWR+ R AARA RDA +A  +RGAW +WR  VAL  RDR+ R++W
Sbjct:    1 MASLRLARAGAINQGVFVSGSLSNDGHARVDAFVDRWHCRRSAERSGLILAAVLEHLAWSVRTRLLAGYLDRWRSNRAPLPRTLLRPKTFLLVDTRRRDNLHKALTAWGLLTRQLYAERALARRKGARVARQLGRREAKLRAAGFSRWIDATLERRDEERRRVGCFERWKIFVLLCQHNSSWGVERAMRVLHRAWLQHLAFHRLLAWRAERVAARALRDAFSATLLRGAWVAWRFTVALDNRDRMARQAW 250
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BLAST of mRNA_P-littoralis_Contig753.26.1 vs. uniprot
Match: A0A6H5K0P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P9_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 3.210e-99
Identity = 160/250 (64.00%), Postives = 179/250 (71.60%), Query Frame = 1 
Query:  154 MGSLRLARSGAINQGVFTSASLTTDRRARVDAFVDRWHCRRSAQRSGQIFAGVLEHLAWRVRTRLLAAYLNRWRTSPAPLPRPPLRPKLFLLLDIRRRTALHKSFAGWSLLARQLSTDRGFARRKGIRILRLLGRREAGLKAAGIGRWRSYVRAARDLERRREACFEQWKFFVLLRRHDSSWGVERAMRILRRMWLHRLAFDRLRAWRSARAAARAGRDALAAAHVRGAWGSWRHAVALYYRDRIVRESW 903
            M SLRLAR+GAINQGVF S SLT D  ARVDAFVDRWHCRRSA+RSG I A VLEHLA  VRTRLLA YL+RWR + APLPR  LRPK FLLLD+RRR  LHK+   W LL RQL  DR   RRKG R+ R L R +A L+AAG  RW    RA RD E RR  CFE+WK FVLL +H+SSWGVERAMR+LRR WL  LAF RL AW + R AARA RD L    +RGAW +WR  VA   R  + R++W
Sbjct:    1 MASLRLARAGAINQGVFLSGSLTNDGHARVDAFVDRWHCRRSAERSGLILAAVLEHLARSVRTRLLAGYLDRWRRTRAPLPRTLLRPKTFLLLDMRRRDNLHKALTAWGLLTRQLHADRALTRRKGARVARQLRRGDAKLRAAGFSRWIEATRARRDEESRRVGCFERWKLFVLLCQHNSSWGVERAMRVLRRAWLQHLAFHRLSAWHAERVAARALRDVLTTTLLRGAWVAWRCTVARDNRSMMARQAW 250
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig753.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH10_ECTSI1.100e-10566.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0P9_9PHAE3.210e-9964.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig753contigP-littoralis_Contig753:86679..91350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size906
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003050.1
Cds size906
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791558.021578-CDS-P-littoralis_Contig753:86678..869001680791558.021578-CDS-P-littoralis_Contig753:86678..86900Pylaiella littoralis U1_48CDSP-littoralis_Contig753 86679..86900 -
1680791558.0358446-CDS-P-littoralis_Contig753:87253..875991680791558.0358446-CDS-P-littoralis_Contig753:87253..87599Pylaiella littoralis U1_48CDSP-littoralis_Contig753 87254..87599 -
1680791558.046935-CDS-P-littoralis_Contig753:88786..890131680791558.046935-CDS-P-littoralis_Contig753:88786..89013Pylaiella littoralis U1_48CDSP-littoralis_Contig753 88787..89013 -
1680791558.0571356-CDS-P-littoralis_Contig753:91239..913501680791558.0571356-CDS-P-littoralis_Contig753:91239..91350Pylaiella littoralis U1_48CDSP-littoralis_Contig753 91240..91350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig753.26.1prot_P-littoralis_Contig753.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig753 86679..91350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig753.26.1

>prot_P-littoralis_Contig753.26.1 ID=prot_P-littoralis_Contig753.26.1|Name=mRNA_P-littoralis_Contig753.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp
GTLLRPAAWTRVYAWKPGSARFRANDKDDLGNGESSTVFAFSKHNQERPN
FMGSLRLARSGAINQGVFTSASLTTDRRARVDAFVDRWHCRRSAQRSGQI
FAGVLEHLAWRVRTRLLAAYLNRWRTSPAPLPRPPLRPKLFLLLDIRRRT
ALHKSFAGWSLLARQLSTDRGFARRKGIRILRLLGRREAGLKAAGIGRWR
SYVRAARDLERRREACFEQWKFFVLLRRHDSSWGVERAMRILRRMWLHRL
AFDRLRAWRSARAAARAGRDALAAAHVRGAWGSWRHAVALYYRDRIVRES
W*
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mRNA from alignment at P-littoralis_Contig753:86679..91350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig753.26.1 ID=mRNA_P-littoralis_Contig753.26.1|Name=mRNA_P-littoralis_Contig753.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4672bp|location=Sequence derived from alignment at P-littoralis_Contig753:86679..91350- (Pylaiella littoralis U1_48)
GGGACGCTCCTTCGTCCTGCGGCGTGGACAAGGGTGTACGCTTGGAAGCC
AGGTAGTGCTCGTTTCAGAGCCAACGACAAGGATGATTTGGGCAACGGGG
AGAGCTCCACGGTAAGCGATATAGCTACCGAGGTACCAGTTTCGGCCTAT
GATACTACATACTTCGTACATACGTAGACAACACCGTCTCCCCGAGTGAA
CATCTATCTACCACATGCTTTACACTCCGCCGCTGTTGTATCGTACACGG
GTGGCCAGAGGAGTAGGTTGGGAGGTACGTTGGCCAACCTGAGGTTGGGA
GGAGGTTGCGGCACCGATGCCAACCTCCGCGGTTGGCCAACCTACACCCT
CCCAACCTTCCCGGGTTGGCCCCAGGTTGGCCAACCTCTCTTTCTTTTGG
CTCGGAAAAAAGAAGAAACACCCGGAGCCGAACTCGGGATCACTGGGGAA
AAGAGCAGTCCCCGACCGACGCACCAGAACTGTTTGTTTACAAAGTGCGA
CTTTTTTTCTGTTTTATGTTTGGTACTTTGGCCACCACAGATGGTACCCC
AAACAACGGTACCCTTTCTGTTTTGAGAATATATACTTAAGGGTTGCCTG
ACAAGGGCGGTAAAAACCTCCTTACTGAAAAACAAAATTTTTGATCTGAA
ATACTGGCATTTATTTCAATCTGTAATCAAGTCAAAAGAGCTTTTTTTTA
TAAGGCTTAAACATGGGCTGTCGTCTGTGCGTGCCCGATAACAAGGATTA
AATCAGGAGAAGACGTCATGCAGTAGCTTCATCTGCGTCGGCGCATTCAG
ATCTTCTACTGGGGCTTAGTTATCGAAGTTCGCAGCATTGATTGGCACAA
GAACTCCGCAGGATCCCTGAAAAACTCCGCAATCCGGACTGACGCTAAAC
GTTTGACGCAGCTGTACTCGCCGCCATCGGCATCAATCTTCTGAACTAAC
TGCGGTTCGTCTGAGGTAGCTATTGGCATGAGCTACTGCTGTTGACCCGT
AGTTTTGGAGGTTAAGGTATGTGGCGTCGAGTACAGCAGTGGGAGATAGC
ACAGCAGCAGTGGAAGATGATTTTTGGACTCTGTCCATTTTGCGGAGTTT
TTGATCCTCTACTGCGACCATCGATATCTAAGCCTCAGCAGCAGCTCTGA
ATGCGCCGACGCAGATGTAGCTACTACATGACGTCTTCTCTTGATTTAAT
CCTTGTTATCGGGTACGCACAGACGACAGCCCATGTTTAAGCCTTATCAA
AATAAGCTCTTTTGACTTGATTTTAGAGTCGTTAAAACTCTTATCTTGAT
ATTTATGTAAGAGATTGGAGGTAGACATGTGATACGCATGTGAAGAGGAG
CCCCCGCCGCCGCTGTGTGCGATAACTAACCGTTTCCCTCTTTCCCGACA
CCTTCCTACTGGTGTGAGGTACCCAGTGTGTGAGTGTCTGGGCCCGTTCA
CTGTTTTTCAAAATCCGTGCCTCTCGACGATCGGTTGTCAGGGAAGCCTT
AACACTCCGTATTTTATTTAATTTTTTACAAAAAACACGCCACCTATGGT
TTTTCAGCCCACGCGGGACGCTTCGACGCTATCAACGACATTCTCGCAGC
TTGTTCGAATACAAACAATGTTCTGTTTTGACTTTTTTTTCGATTTTCCG
ATATTTGTTTTCGCACCTACATGTTCGAAAATTGTTTACAGTAGGGGCTG
ACCATAATCGGTCGAGGAATGCGAATTTCAAAAAATCGTTTCGGATCTAC
GCCGTTTATTCGAATACAAAAAAATAACATGTCAATAACATGTCTTGGTT
TTTTTTCGATTTTTCGATTTTTTCGCACACATTTCGAAAAAAGTCGAATA
ATATGGGCTGACCGTAAATGGTCGAAGAATGCGATTTTTGAAAAACGATT
TCAGATTTAGGGCGTTTGTGCGAATACAAGAAAATGAGATGTCTTGAGTT
TTCGGGGTGTTTTTTTGTATTATTTCCTGAAAAAAGGTCTTCCCCTGAAA
AAAACAAGGTTGGGTGGAGGTTGGCCAACTACGAATATGGTCGCAGGTTG
GGACCACCCTCCCAGCCACCGCTCCCAACCTCGGGAGATTGGGAAGAAGT
TGGGAAGGCTGCCAACCTACCCCTCGGGCCACCTGTGTAGCAGTAGTTGT
TGTTAGAAACTACAAGGAGTGGGTATAGTTTATCTTCACATACACAAACA
CACATACACGCACGCGTGCTTTTTGGCTGCTTGAATGACGAAATGTGCGT
GTCTAGACGCTCTTGCGGTATTATTACCATTACGGCAACATTATGCACTC
GCTCATATCGTAATACATACATACTTGTCACGAGCAGGTCTTTGCTTTCT
CCAAGCATAATCAAGAGAGACCTAACTTCATGGGCAGCCTTCGCCTCGCG
AGGTCGGGCGCCATCAACCAAGGGGTATTCACATCGGCATCACTTACAAC
CGACCGGCGCGCTCGAGTTGACGCCTTCGTTGACCGCTGGCATTGCAGGC
GCTCTGCGCAAAGATCAGGACAAATATTTGCGGGGGTACTGGAACACTTG
GCATGGCGCGTGAGGTATGGATAGCCTTGAACTAATGAACCCAACATGTG
TTCAACACTCCGTCCCGAACGCAATAAACCGCCGATTACGACACATACAT
ATGGTACCAAACATACTGACCGCCGTCAATAAAGGAAGACCGTCACATTC
TCGGATATTTGTTCAAGGCTACATCAGTGGAGTAAGGGGAGGAAATATGC
TATTTCTACGGAATGACGTAGATGAACACCCCTCCAAGTTGAATAAATAT
CAGGCTTGCCACTCTAAACGCCAGATAAACAAGCTTCGAGAGGTATAACT
TTCTTTCGCCGACGGATGGTCTCTCTGGGCTATTAGAAAGGTGTCCGCGA
AATATTTTTTCAAAACTCTATGAATTGACGTAGTTTGGCCAATAATAGCG
TAAAAGTTCTTAAATATAGCCGATTCCAAACTAAATTCAAGTAAAAAGGG
TTTTAAGTTCAGGAGTTGACCACACTGACGTGAGTTTTCTCACGCGGTTT
TTTCGAGTTAGACCCTGAAATTTTGCATGCATGTTCTATGGTCTACTGTG
CAACTTTCGACTGTCGGGGTGCGGCGTTTTTTTTTTTACCGGGTTTCTGG
GGTCCCAAGTGAGCCATGTTGACCAAAAAATACCTTCATACTAATACATC
TATCGAAAGGCAAAACCGCTGCACCCCGACAATTGAAAGGTGCGCAGTAG
GCCATAGAACATTCATGCAAATTTTCAGGGTCTAACTCGAAAAAACCGCG
CGAGAAAATGACGAATGCATTTATTTTTATCTTCCTGCTTGAACCAGTCT
GTAAGTAGCTGCGAATTCCCCGTTGCACAGTTGATGTCAAAAAGTAAAAA
ATAAAAAGCCCGCAGAGTGTCCGTGCATTTGACGTCCTTACACGTATCGG
ATTGCCAATTCAGTTATTTTGCGAGCATGTGATGGGAGCATCGAAACCCT
TTCAACAACCAACCCTCGGCATCCGCGTTTCAGTCGCTGTCATCATGCAC
AGAGTAGACACAAAAACTCGGGAATTGTAAAACACCCGCGGACCAAACAA
CAACATGTACTCAACGTTATTGCTCCGCTAAACTCAAGAATTGTTAAAAC
ACCCGCGGGGCCCGAACAAAAAATGTTTTCAACGTTATTGCTCCACTGAA
GGATCAACAATAGCAACGAACGTCAAAATCGTCGACTAACAAACACTACA
GGACGCGGCTCCTGGCCGCCTACCTCAACCGCTGGAGGACGAGCCCCGCA
CCTCTGCCGCGCCCGCCCCTCCGCCCCAAGCTCTTCCTCCTCCTCGACAT
CCGCCGTCGAACCGCCCTCCACAAAAGCTTCGCCGGTTGGAGCCTACTGG
CTCGTCAGCTCTCCACCGACCGAGGCTTCGCGCGGCGAAAGGGAATTCGT
ATTCTCCGCCTGCTGGGGCGGAGAGAGGCGGGGCTGAAGGCGGCAGGGAT
AGGGCGCTGGAGAAGTTACGTGCGCGCAGCGAGGGATCTGGAGCGACGGA
GAGAGGCTTGCTTCGAGCAATGGAAATTTTTCGTCCTCCTTCGTCGCGTG
AGTGAGAGTGCGAGTGGATGAGCGTGGTTCGTCGGTCGAGTGCGTGTGCG
TGTGTGTGTTGTATGTGTGTGGGCGTCGGAAGCACATGGGGAAAATAACA
AAATGATATAGAGGGAGGGGGTTGAAGAGGGGGGATAGCGGAGCTTAGGA
AGCTGTGGTACAAACACTGAGTGGATCTGCCAAAACTGTCCTCGATACGA
CCCGCCACGGCACCCTAGAGCACCTGTAATCCTTCCCTAGCCCGGTTTCT
CACGTGCCCCCTAAGAACAAACTGTCGCCGAAACCTACTTTAAATCCATA
CGCTGTTTACAAATTCCGGCAACACTGCTGTTGTTGTACTTCGTATATAG
CACGACTCGAGTTGGGGCGTCGAGCGCGCGATGCGCATTCTTCGACGCAT
GTGGCTGCATCGCTTGGCCTTCGACCGACTCCGGGCCTGGCGGTCGGCGA
GAGCAGCGGCACGGGCAGGACGCGATGCCCTAGCAGCAGCTCACGTGCGG
GGAGCTTGGGGGTCGTGGCGCCACGCGGTCGCACTGTATTACCGAGACAG
GATCGTCCGCGAGTCATGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig753:86679..91350-

>mRNA_P-littoralis_Contig753.26.1 ID=mRNA_P-littoralis_Contig753.26.1|Name=mRNA_P-littoralis_Contig753.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig753:86679..91350- (Pylaiella littoralis U1_48)
GGGACGCTCCTTCGTCCTGCGGCGTGGACAAGGGTGTACGCTTGGAAGCC
AGGTAGTGCTCGTTTCAGAGCCAACGACAAGGATGATTTGGGCAACGGGG
AGAGCTCCACGGTCTTTGCTTTCTCCAAGCATAATCAAGAGAGACCTAAC
TTCATGGGCAGCCTTCGCCTCGCGAGGTCGGGCGCCATCAACCAAGGGGT
ATTCACATCGGCATCACTTACAACCGACCGGCGCGCTCGAGTTGACGCCT
TCGTTGACCGCTGGCATTGCAGGCGCTCTGCGCAAAGATCAGGACAAATA
TTTGCGGGGGTACTGGAACACTTGGCATGGCGCGTGAGGACGCGGCTCCT
GGCCGCCTACCTCAACCGCTGGAGGACGAGCCCCGCACCTCTGCCGCGCC
CGCCCCTCCGCCCCAAGCTCTTCCTCCTCCTCGACATCCGCCGTCGAACC
GCCCTCCACAAAAGCTTCGCCGGTTGGAGCCTACTGGCTCGTCAGCTCTC
CACCGACCGAGGCTTCGCGCGGCGAAAGGGAATTCGTATTCTCCGCCTGC
TGGGGCGGAGAGAGGCGGGGCTGAAGGCGGCAGGGATAGGGCGCTGGAGA
AGTTACGTGCGCGCAGCGAGGGATCTGGAGCGACGGAGAGAGGCTTGCTT
CGAGCAATGGAAATTTTTCGTCCTCCTTCGTCGCCACGACTCGAGTTGGG
GCGTCGAGCGCGCGATGCGCATTCTTCGACGCATGTGGCTGCATCGCTTG
GCCTTCGACCGACTCCGGGCCTGGCGGTCGGCGAGAGCAGCGGCACGGGC
AGGACGCGATGCCCTAGCAGCAGCTCACGTGCGGGGAGCTTGGGGGTCGT
GGCGCCACGCGGTCGCACTGTATTACCGAGACAGGATCGTCCGCGAGTCA
TGGTGA
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