mRNA_P-littoralis_Contig753.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig753.19.1
Unique NamemRNA_P-littoralis_Contig753.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig753.19.1 vs. uniprot
Match: A0A6H5K2K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K4_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.900e-28
Identity = 67/97 (69.07%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    1 MGPKQKAAAKAATTPAGKAVTVGVGAAEEPPPNAFTPAEAKKLAKLLKASDRGKRLDAIRIVSENHGYIATGGCLLPLLESVMVKKKTEEVVKAASQ 291
            MGPK+KAA  A           G G AE      FTPAEAKKLAKLLKASDRGKRLDAI +VSENH YIA+GGCLLPLLESV+ KKK EEVV AASQ
Sbjct:    1 MGPKKKAAKAAXXXXXXXXXXPGAGGAETSTAITFTPAEAKKLAKLLKASDRGKRLDAIGVVSENHKYIASGGCLLPLLESVVTKKKMEEVVLAASQ 97
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BLAST of mRNA_P-littoralis_Contig753.19.1 vs. uniprot
Match: D7FH05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH05_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.570e-25
Identity = 67/104 (64.42%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 MGPKQKAAAKAATTPAGKAVTVGVG-------AAEEPPPNAFTPAEAKKLAKLLKASDRGKRLDAIRIVSENHGYIATGGCLLPLLESVMVKKKTEEVVKAASQ 291
            MGPK+KAA KAA  PA                  E      FTPAEAKKLAKLLKASDRGKRLDAI +VSENH YIA+GGCLLPLLESV+ KKK E+VV AASQ
Sbjct:    1 MGPKKKAA-KAAAAPAXXXXXXXXXXXXXXXXGTETSTAATFTPAEAKKLAKLLKASDRGKRLDAIGVVSENHRYIASGGCLLPLLESVVAKKKMEDVVLAASQ 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig753.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2K4_9PHAE4.900e-2869.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH05_ECTSI4.570e-2564.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig753contigP-littoralis_Contig753:56237..56545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FH05
PFAMsAnk_2,Ank_4
Model size309
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.49e-26
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size309
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791557.6476054-CDS-P-littoralis_Contig753:56236..565451680791557.6476054-CDS-P-littoralis_Contig753:56236..56545Pylaiella littoralis U1_48CDSP-littoralis_Contig753 56237..56545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig753.19.1prot_P-littoralis_Contig753.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig753 56237..56545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig753.19.1

>prot_P-littoralis_Contig753.19.1 ID=prot_P-littoralis_Contig753.19.1|Name=mRNA_P-littoralis_Contig753.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MGPKQKAAAKAATTPAGKAVTVGVGAAEEPPPNAFTPAEAKKLAKLLKAS
DRGKRLDAIRIVSENHGYIATGGCLLPLLESVMVKKKTEEVVKAASQAWF
SE*
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mRNA from alignment at P-littoralis_Contig753:56237..56545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig753.19.1 ID=mRNA_P-littoralis_Contig753.19.1|Name=mRNA_P-littoralis_Contig753.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig753:56237..56545- (Pylaiella littoralis U1_48)
ATGGGGCCGAAGCAAAAGGCGGCGGCGAAGGCCGCAACAACGCCCGCTGG
GAAAGCGGTGACTGTAGGAGTAGGAGCGGCCGAAGAACCTCCTCCAAATG
CATTCACTCCAGCCGAAGCTAAGAAGTTGGCGAAGCTTCTGAAAGCTTCG
GATCGCGGCAAGCGCTTAGACGCCATCCGCATTGTGTCGGAGAACCACGG
GTACATCGCCACCGGGGGATGCCTCCTCCCGCTCCTGGAGTCGGTGATGG
TGAAGAAGAAGACGGAGGAGGTCGTCAAGGCCGCATCACAGGCATGGTTC
TCTGAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig753:56237..56545-

>mRNA_P-littoralis_Contig753.19.1 ID=mRNA_P-littoralis_Contig753.19.1|Name=mRNA_P-littoralis_Contig753.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig753:56237..56545- (Pylaiella littoralis U1_48)
ATGGGGCCGAAGCAAAAGGCGGCGGCGAAGGCCGCAACAACGCCCGCTGG
GAAAGCGGTGACTGTAGGAGTAGGAGCGGCCGAAGAACCTCCTCCAAATG
CATTCACTCCAGCCGAAGCTAAGAAGTTGGCGAAGCTTCTGAAAGCTTCG
GATCGCGGCAAGCGCTTAGACGCCATCCGCATTGTGTCGGAGAACCACGG
GTACATCGCCACCGGGGGATGCCTCCTCCCGCTCCTGGAGTCGGTGATGG
TGAAGAAGAAGACGGAGGAGGTCGTCAAGGCCGCATCACAGGCATGGTTC
TCTGAGTGA
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