mRNA_P-littoralis_Contig75.96.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig75.96.1 vs. uniprot
Match: A0A6H5K0J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J1_9PHAE) HSP 1 Score: 639 bits (1649), Expect = 1.520e-206 Identity = 650/1048 (62.02%), Postives = 689/1048 (65.74%), Query Frame = 2
Query: 299 MPPIRADHGLSWRKAAAGGGVEAPEERSKQPRRSTPLTKRSSPSHSRTPSPNLQVPSSSSIATVHVPAGYGHVGARRSPSSKAAGSGSSSSRNVFPES----------GPREKRRASPTHADPSRKGYTSHAHSQR----GPPFKVAGAS---------WGVSSPTQVVGGXXXXXXXXXXXXXXXTQPSGSNKRDHSSPTLASRDPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGL-------DASRAEVREMTRLDRVFLEQPHEGRKDVEGDDLHVSNEIQRHLKTRVQSQQSQLMEAT--ESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGTD-----------FMDHHHGPDLLLSSTGLGVTPVSPSSGSGPVQGNKEDLDV-EGLSFGNPMDFLLAGSDGGXXXXXXXXXXXXYGTLNRESSSPSRGSPRSRSPPAVLPALGPKPDIQMGEAGGGVGVGVRVGGDGNLREVVSGFDAMDLDDLGNVDLALALLTAKKQWIIAN-------AKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRHQGGVGEQGSPSTAGGRSEAFGVSGGGSVRGTGGAPMPSSSVTYSSNRGPRGQQGRPPPVPGHLSASTAAMRRSSPGSIASLAELDSYLEHHHRRLVEQVEGGAGTDDVEAEIRASRTP-RRGTRSHQRFGASPGSHNGLGSSNSSSSVPRTVGAGVSTKSFFHSTLSADGYNS----------GXXXXXXXXXXXXXXXXXXXXXQRVPVEWSCNVNGXXXXERSSVSSSSQGWDPPNLRGPGYKRERAEDIRGGGEDGGWGASLRGFRGGDDNSNGGGGVDEDADSRGSAFMGVCGTSQTSS-----PPPSSIMSSDDVSVSSYGHPVNVLPGSPNNMRFDGRPPPSLAKIRLEAVRSPVVRHGRFGARGGXXXAEDG---------------SGGLVFTSPDASKHVQELCSPRSAFTPRSASSLSSLASSRGRR 3196
MPPIRADH + +A V EER+KQPRRS PLTKR+SPSHSRTPSPN Q P S++IATVH YGHVGARRSPSSKA GS +SR VF +S GPREKR A D +RKGY + GPP KVA XXXXXXXXXXXXXXX S+ R HSSPTL+ AA XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX GL SRAE REMT LDRVFLEQPHEGR DVEGDDLHVSNEIQRHLKTRVQSQQSQ MEAT ES XXXXXXXXXXXXXXXXXXXXXXXXXXXXX F+DHH PD LL+ G V PVSPSSGSGPVQG + DLDV GLS G PMD+LL GSD G G NR+SSSPSR +PRSRSPP PALGP PDIQMGEAGG DGNLREVVSGFDAMDLDDL NVD ALALL AKKQWIIA A+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX STAGGR EAFGVSG SS V+Y+S RG RGQQGRPPPVPGHLSASTAAMRRSSPGSIASLAELDSYLEHHHRRLVEQVEG DDVEAEI ASR RR RSH+ F A G+ + GS +S SSVPRTVGAGV+TK FF STLSADGYN X XXXXXXXXXXXXXXXXX XXXX +SSS+GWDPPN RGPGYKR+R DGGWGA+LRGFRGG++ + G G S +S SIMSSDDVSVSSYGHPV VLPGSPNN+ F+GRPPPSLAKIRLEAVRSP VR G G +GG +FTSPDASKHV ELCSPRSAFTPRSASS+SSLASSRGRR
Sbjct: 1 MPPIRADHRCIRKSGSAS--VPEVEERAKQPRRSAPLTKRNSPSHSRTPSPNQQAPPSATIATVHAATAYGHVGARRSPSSKAGGS---TSRGVFLDSSGGGSNAIMSGPREKRGA-----DQTRKGYNQRGLGSKSPAFGPPHKVAATRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSARGHSSPTLSRVIDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMMTLASASTMAGXXXXXXXXXXXXXGLAVASRQPSPSRAEAREMTLLDRVFLEQPHEGRVDVEGDDLHVSNEIQRHLKTRVQSQQSQRMEATIQESSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPISNVPAVXXXXXXXXXFLDHH-APDHLLAPAG--VMPVSPSSGSGPVQGGQMDLDVGAGLSLG-PMDYLLTGSDKGNSCSSRQGGVGVGGASNRDSSSPSRRAPRSRSPP---PALGPVPDIQMGEAGG----------DGNLREVVSGFDAMDLDDLDNVDRALALLNAKKQWIIAKQYAEAQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTAGGRLEAFGVSGXXXXXXXXXXSFMSSPVSYTSGRGSRGQQGRPPPVPGHLSASTAAMRRSSPGSIASLAELDSYLEHHHRRLVEQVEGVVA-DDVEAEIEASRQQHRRNPRSHRSFEAGGGTRSHNGSCSSGSSVPRTVGAGVTTKCFFDSTLSADGYNDYNAGDDXXXXXXFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDQRTSSSRGWDPPNQRGPGYKRDRDRAEA----DGGWGATLRGFRGGNNANCGXXXXXXXXXXXXXXXXXXXGVSGGTSLTXXXXXXPSIMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPAVRRGNRSGAGAARSXXXXXXXXXXXXXXXXXMHNGGPIFTSPDASKHVHELCSPRSAFTPRSASSVSSLASSRGRR 1016
BLAST of mRNA_P-littoralis_Contig75.96.1 vs. uniprot
Match: D8LF04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF04_ECTSI) HSP 1 Score: 335 bits (859), Expect = 1.680e-96 Identity = 454/1031 (44.03%), Postives = 478/1031 (46.36%), Query Frame = 2
Query: 299 MPPIRADHGLSWRKAAAGGGVEAPEERSKQPRRSTPLTKRSSPSHSRTPSPNLQVPSSSSIATVHVPAGYGHVGARRSPSSKAAGSGSSSSRNVFPES----------GPREKRRASPTHADPSRKGYT-SHAHSQRG---------PPFKVAGAS----------WGVSSPTQVVGGXXXXXXXXXXXXXXXTQPSGSNKRDHSSPTLASRDPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGLDA----SRAEVREMTRLDRVFLEQPHEGRKDVEGDDLHVSNEIQRHLKTRVQSQQSQLMEATESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGTDFMDHHHGPDLLLSSTGLGVTPVSPSSGSGPVQGNKEDLDVEGLSFGNPMDFLLAGSDGGXXXXXXXXXXXXYGTLNRESSSPSRGSPRSRSPPAVLPALGPKPDIQMGEAGGGVGVGVRVGGDGNLREVVSGFDAMDLDDLGNVDLALALLTAKKQWIIANA------KQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRHQGGVGEQGSPSTAGGRSEAFGVSGGGSVRGTGGAPMPSSSVTYSSNRGPRGQQGRPPPVPGHLSASTAAMRRSSPGSIASLAELDSYLEHHHRRLVEQVEGGAGTDDVEAEIRASRTPRRGTRSHQRFGASPGSHNGLGSSNSSSSVPRTVGAGVSTKSFFHSTLSADGYNSGXXXXXXXXXXXXXXXXXXXXXQRVPVEWSCNVNGXXXXERSSVSSSSQGWDPPNLRGPGYKRERAEDIRGGGEDGGWGASLRGFRGGDDNSNGGGGVDEDADSRGSAFMGVCGTSQTSSPPPSS------IMSSDDVSVSSYGHPVNVLPGSPNNMRFDGRPPPSLAKIRLEAVRSPVVRHGRFGARGGXXXAEDG-------------------SGGLVFTSPDASKHVQELCSPRSAFTPRSASSLSSLASSRGRR 3196
MPPIRADH + +A V EER+KQPRR+ PLTKR+SPSHSRTPSPN Q P SS+IATVH YGHVGARRSPSSKA GS +SR+VFP+S GPREKR A D +RKGY HAHSQRG PP KVA XXXXXXXXXXXXXXX S+ R HSSPTL+ AA XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX SRAE REMT LDRVFLEQPHEGR DVEGDDLH MGEAG DGNLREVVSGFDAMDLDDL NVD ALALL AKKQWIIA QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PSTAGGR G RGQQGRPPPVPGHLSASTAAMRRSSPGSIASLAELDSYLEHHHRRLVEQ RT SSS+GWDPPN RGPGYKR+R DGGWGA+LRGFRGG++ + G IMSSDDVSVSSYGHPV VLPGSPNN+ F+GRPPPSLAKIRLEAVRSP VR G +R G A G +GG +FTSPDASKHV ELCSPRSAFTPRSASS+SSLASSRGRR
Sbjct: 1 MPPIRADHRCIRKSGSAS--VPEVEERAKQPRRTAPLTKRNSPSHSRTPSPNQQAPPSSTIATVHAATAYGHVGARRSPSSKAGGS---TSRSVFPDSSGGGSNATLSGPREKRSA-----DQTRKGYNLPHAHSQRGLGSKSPAFGPPHKVAATRSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSARGHSSPTLSRVIDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTLGSASTMAGGSXXXXXXXXXXXXXXXXSRQPSPSRAEAREMTLLDRVFLEQPHEGRVDVEGDDLH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGEAGA----------DGNLREVVSGFDAMDLDDLDNVDRALALLNAKKQWIIAKQYAEAQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTAGGR-------------------------------GSRGQQGRPPPVPGHLSASTAAMRRSSPGSIASLAELDSYLEHHHRRLVEQ--------------------------------------------------RT-------------------------------------------------------------------SSSRGWDPPNQRGPGYKRDRDRVEA----DGGWGATLRGFRGGNNANRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPAVRRG---SRSGAGTARSGXXXXXXXXXXXXXXXXXMRNGGPIFTSPDASKHVHELCSPRSAFTPRSASSVSSLASSRGRR 687 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig75.96.1 >prot_P-littoralis_Contig75.96.1 ID=prot_P-littoralis_Contig75.96.1|Name=mRNA_P-littoralis_Contig75.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=968bp MPPIRADHGLSWRKAAAGGGVEAPEERSKQPRRSTPLTKRSSPSHSRTPSback to top mRNA from alignment at P-littoralis_Contig75:322104..327156- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig75.96.1 ID=mRNA_P-littoralis_Contig75.96.1|Name=mRNA_P-littoralis_Contig75.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5053bp|location=Sequence derived from alignment at P-littoralis_Contig75:322104..327156- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig75:322104..327156- >mRNA_P-littoralis_Contig75.96.1 ID=mRNA_P-littoralis_Contig75.96.1|Name=mRNA_P-littoralis_Contig75.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2904bp|location=Sequence derived from alignment at P-littoralis_Contig75:322104..327156- (Pylaiella littoralis U1_48)back to top |