mRNA_P-littoralis_Contig75.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.31.1
Unique NamemRNA_P-littoralis_Contig75.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:98815..99756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size942
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.3129842-UTR-P-littoralis_Contig75:98814..990071680791544.3129842-UTR-P-littoralis_Contig75:98814..99007Pylaiella littoralis U1_48UTRP-littoralis_Contig75 98815..99007 -
1680791544.3537037-UTR-P-littoralis_Contig75:99478..997561680791544.3537037-UTR-P-littoralis_Contig75:99478..99756Pylaiella littoralis U1_48UTRP-littoralis_Contig75 99479..99756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.3388176-CDS-P-littoralis_Contig75:99007..994781680791544.3388176-CDS-P-littoralis_Contig75:99007..99478Pylaiella littoralis U1_48CDSP-littoralis_Contig75 99008..99478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.31.1prot_P-littoralis_Contig75.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 99008..99478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.31.1

>prot_P-littoralis_Contig75.31.1 ID=prot_P-littoralis_Contig75.31.1|Name=mRNA_P-littoralis_Contig75.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
MVRDLGVVSWRQKIAQPVSTTIQQYSILSTSIILDDTAVRTLSTSHTYRR
RLPWTARLAGNLFPVALTHSVLTSDTTQTIKPTLHHTSEVNRWFMCGSRM
LSTRSVRSCPDTGKLVLRTSNDILPLYHKSGLLGLYAPSTVSDVFGDNFF
EIFGVF*
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mRNA from alignment at P-littoralis_Contig75:98815..99756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.31.1 ID=mRNA_P-littoralis_Contig75.31.1|Name=mRNA_P-littoralis_Contig75.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=942bp|location=Sequence derived from alignment at P-littoralis_Contig75:98815..99756- (Pylaiella littoralis U1_48)
GATATAGCGAAACGAGAGAGGGCAAGGTTGTCCTGGATCAACGTACTTGC
AGAGGCACATGTGAGAGGAGGGCTTCATATAAGGTCTGATGAGTGCGTCG
GTGTTGGTTGTGTTGCCGTGCTCTGCGCACATGCGGCGCAATCTGAAAAT
GCTCGGCATCTATGTAGCCGCAACCCTGTCATGCAGTCATCGTCATCCTT
CCATGTGACCCAGTGGCCCTGCCCCATTACTGCTGTACCAACCCAGTCGT
TTTGATCGCATTCGTGCAGGTTGGGTGAATGGTTAGAGATTTAGGGGTGG
TTTCATGGCGGCAAAAAATCGCCCAGCCTGTGTCCACAACGATTCAGCAG
TACAGCATACTCAGTACCAGTATTATATTGGATGATACAGCAGTTCGCAC
GTTGTCGACATCCCATACATACAGACGACGTTTGCCCTGGACAGCAAGGC
TCGCTGGGAACTTGTTCCCTGTAGCCCTAACCCACTCTGTTCTCACCAGC
GACACAACGCAAACTATCAAACCGACCCTGCACCACACATCCGAGGTGAA
CAGGTGGTTTATGTGTGGATCGAGAATGTTGTCAACCCGAAGTGTGCGTT
CATGTCCTGACACGGGCAAACTGGTACTTCGTACTTCGAATGATATACTT
CCTCTGTATCATAAGTCTGGGCTGTTAGGTTTATACGCCCCCTCAACGGT
GTCCGATGTCTTCGGCGATAATTTTTTCGAAATCTTCGGAGTTTTTTAGG
TTGAAACACATATATATTTTTTTCTTGCGCACTACCCTGCGCATGGGCTA
GCGGCTAACAAAAAAATAGTCAGGCCAAAAATGGCCGTACAGTATTTAAC
CCTTTCCAGAGGTGGAGTGGGGGGCGGGGGCAAAAAAAAAAAACAATGCA
ATCCCCCCCAAAATTATCCCTAACCCTGAACCTAGCCCCCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:98815..99756-

>mRNA_P-littoralis_Contig75.31.1 ID=mRNA_P-littoralis_Contig75.31.1|Name=mRNA_P-littoralis_Contig75.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig75:98815..99756- (Pylaiella littoralis U1_48)
ATGGTTAGAGATTTAGGGGTGGTTTCATGGCGGCAAAAAATCGCCCAGCC
TGTGTCCACAACGATTCAGCAGTACAGCATACTCAGTACCAGTATTATAT
TGGATGATACAGCAGTTCGCACGTTGTCGACATCCCATACATACAGACGA
CGTTTGCCCTGGACAGCAAGGCTCGCTGGGAACTTGTTCCCTGTAGCCCT
AACCCACTCTGTTCTCACCAGCGACACAACGCAAACTATCAAACCGACCC
TGCACCACACATCCGAGGTGAACAGGTGGTTTATGTGTGGATCGAGAATG
TTGTCAACCCGAAGTGTGCGTTCATGTCCTGACACGGGCAAACTGGTACT
TCGTACTTCGAATGATATACTTCCTCTGTATCATAAGTCTGGGCTGTTAG
GTTTATACGCCCCCTCAACGGTGTCCGATGTCTTCGGCGATAATTTTTTC
GAAATCTTCGGAGTTTTTTAG
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