mRNA_P-littoralis_Contig75.30.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.30.2
Unique NamemRNA_P-littoralis_Contig75.30.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.30.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:96855..99742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size380
Hectar predicted targeting categoryother localisation
Exons3
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.1886182-CDS-P-littoralis_Contig75:96854..969351680791544.1886182-CDS-P-littoralis_Contig75:96854..96935Pylaiella littoralis U1_48CDSP-littoralis_Contig75 96855..96935 -
1680791544.2002487-CDS-P-littoralis_Contig75:98175..984261680791544.2002487-CDS-P-littoralis_Contig75:98175..98426Pylaiella littoralis U1_48CDSP-littoralis_Contig75 98176..98426 -
1680791544.2119052-CDS-P-littoralis_Contig75:99696..997421680791544.2119052-CDS-P-littoralis_Contig75:99696..99742Pylaiella littoralis U1_48CDSP-littoralis_Contig75 99697..99742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.30.2prot_P-littoralis_Contig75.30.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 96855..99742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.30.2

>prot_P-littoralis_Contig75.30.2 ID=prot_P-littoralis_Contig75.30.2|Name=mRNA_P-littoralis_Contig75.30.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
REGKVVLDQRTCRGTSKGNLQQLDLDDLTRKWSSLHDELTEEDGELQAQT
SCGATMDNLEDYVADKTRWSRKGVPRERFWWNLKAYKLLGNTPRMASMQI
AGFLFRAGSGQGVRATAGYFEIAEGS
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mRNA from alignment at P-littoralis_Contig75:96855..99742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.30.2 ID=mRNA_P-littoralis_Contig75.30.2|Name=mRNA_P-littoralis_Contig75.30.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2888bp|location=Sequence derived from alignment at P-littoralis_Contig75:96855..99742- (Pylaiella littoralis U1_48)
AGAGAGGGCAAGGTTGTCCTGGATCAACGTACTTGCAGAGGCACATGTGA
GAGGAGGGCTTCATATAAGGTCTGATGAGTGCGTCGGTGTTGGTTGTGTT
GCCGTGCTCTGCGCACATGCGGCGCAATCTGAAAATGCTCGGCATCTATG
TAGCCGCAACCCTGTCATGCAGTCATCGTCATCCTTCCATGTGACCCAGT
GGCCCTGCCCCATTACTGCTGTACCAACCCAGTCGTTTTGATCGCATTCG
TGCAGGTTGGGTGAATGGTTAGAGATTTAGGGGTGGTTTCATGGCGGCAA
AAAATCGCCCAGCCTGTGTCCACAACGATTCAGCAGTACAGCATACTCAG
TACCAGTATTATATTGGATGATACAGCAGTTCGCACGTTGTCGACATCCC
ATACATACAGACGACGTTTGCCCTGGACAGCAAGGCTCGCTGGGAACTTG
TTCCCTGTAGCCCTAACCCACTCTGTTCTCACCAGCGACACAACGCAAAC
TATCAAACCGACCCTGCACCACACATCCGAGGTGAACAGGTGGTTTATGT
GTGGATCGAGAATGTTGTCAACCCGAAGTGTGCGTTCATGTCCTGACACG
GGCAAACTGGTACTTCGTACTTCGAATGATATACTTCCTCTGTATCATAA
GTCTGGGCTGTTAGGTTTATACGCCCCCTCAACGGTGTCCGATGTCTTCG
GCGATAATTTTTTCGAAATCTTCGGAGTTTTTTAGGTTGAAACACATATA
TATTTTTTTCTTGCGCACTACCCTGCGCATGGGCTAGCGGCTAACAAAAA
AATAGTCAGGCCAAAAATGGCCGTACAGTATTTAACCCTTTCCAGAGGTG
GAGTGGGGGGCGGGGGCAAAAAAAAAAAACAATGCAATCCCCCCCAAAAT
TATCCCTAACCCTGAACCTAGCCCCCCTACCTCCAAGATTCATGTCGAGT
CCCTCCTTACTAAAATCAGTATAATAGTGACGCGACGCTAAAACCAAGAC
ACTTGGGTTTGCAACACTAAAACGAAGATACTTGGGACTCATGCTCTAAA
ACCAAGACATCTGGCGGAATCAAAATTCTTTAAATGGGCCAAAATGGGCA
TATTTTGACTTCATTTCAGTATAAACAACTGGCTTTTTTTTTTCTTTTTT
TTTGCATCAGCTTCTTTGAGACTTCATCTTTCGAACGAACCTAACTATAG
GATGATCGAAACAGTATGGATGCGCAAACAATTACACGCACCTAACAGCC
CAGGCTTATGATACAGAGAAGTATATGCCTTGTGCTGTTGTGCCTGACTG
ATGCTCTGTACGCCAGCCAAGGGTAATTTGCAGCAGCTGGATTTGGACGA
TCTCACCAGAAAGTGGTCGTCACTGCATGATGAGCTTACGGAGGAAGACG
GCGAACTTCAGGCACAGACGAGCTGTGGTGCTACGATGGACAACTTGGAG
GACTACGTAGCAGACAAAACAAGATGGAGTCGCAAGGGTGTCCCTCGCGA
GCGATTCTGGTGGAATCTGAAGGCGTACAAGTTGCTAGGAAACACTCCGC
GAATGGCTTCAATGCAGGTGTGTACCTACGTGCCTGTTCCCCTGTGAAAA
TACTATTCTGAGATATTTATGTTCTCCTGCCTGAACCCTATCCTGAGCGG
GGAGACAAAACTTCGCATGTATGATACCCACATCGGAGTATTTTGTACCG
AAGTCGTCACCAGCTGCAATACAAGTATTGACAGCAAGTGCCTCATGTTT
AATCGTCTTGTTGTGCTCCTCAATGCCGTCGACGATCTGGCATGATACGG
TGAGTTTACTTTCCCTTAGCACATGCCGAGGAGCTTCTTATATTGTGGTA
GTGGTTTCTTCCTTTTTTGCCTATCACTCCGAAACAACCCATGCCGACCT
TCCGGAGCTTTGCAGGCCGCGTCCATGATAATGATTGGGTAGCACTGGCA
ATAGCAACGATGACCGTATCCAGCAGCAGTATCAACATGATTGCTTTGGC
GGCTTATCTTTCTCGATAAATTACGCGTATTTACTACTTGAAGTACTGTA
TTTACATCATTAGACTCAAAGTTTTACACCAGACCGAAGTAGGCCAAACA
CACAAGAGCACCCCGTAGGCTTGGCTGGCTTACAGCTGTATTTGAACCAA
TACTTCAAGTACAAGTACAAACTGTGTAATCCTAGGTGTGGTAATACGGC
GAATGTAGACATTGAGCTTTTCCTCAAACGACAAGAAATAGTGCACGGCA
ATTTTTGTGCGCTGGACAGGCCGTCGTAATCACGTATACCCGGTACAGTA
GCAGCAACAGCTACTGGTGAGCAGAGTTGCAGCAACAAGACGCGAAGGCT
TTTGCGGCTCATACTCTGTCGGATGTCTTCCGCCTGGCACGTTTTGTCTA
TCCGTTACGACACGAAGCGCTGCTCACAGACCAACCCCATGTTGAACATG
CACACAAGGCACCCCCCCCCCCCCACACACGCTCCCGAGCAAGAGATGTA
CGCGCGGGGGGGGGGATGACCACCACCCCCCTCCGCACCGGTCGCACATT
TCCCTCCCCATATCCGGCTCCACGGTGTAGCGTTATAACACTTGTCTTTC
GGCACGCCATGGCTATTACTTGTGTTGTGCTGAGATCCCCCCCCGCGTAC
CTCTCCCATCCTTCATCATTTTTGTCGGCGTGTTTGGTTTATTCTATATC
GAAGGAAAACAACATTCCGGTGATCGTACAGGCGCCGTATCATATGGCAC
CACCCCTAGATGTTTCGTGTAAACGACACGGGGCCATACGTCGACCCGTG
TGAACAGATTGCAGGGTTTCTTTTCCGAGCGGGGAGCGGACAGGGAGTGC
GAGCAACCGCGGGATATTTCGAGATCGCCGAAGGTTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:96855..99742-

>mRNA_P-littoralis_Contig75.30.2 ID=mRNA_P-littoralis_Contig75.30.2|Name=mRNA_P-littoralis_Contig75.30.2|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig75:96855..99742- (Pylaiella littoralis U1_48)
AGAGAGGGCAAGGTTGTCCTGGATCAACGTACTTGCAGAGGCACATCCAA
GGGTAATTTGCAGCAGCTGGATTTGGACGATCTCACCAGAAAGTGGTCGT
CACTGCATGATGAGCTTACGGAGGAAGACGGCGAACTTCAGGCACAGACG
AGCTGTGGTGCTACGATGGACAACTTGGAGGACTACGTAGCAGACAAAAC
AAGATGGAGTCGCAAGGGTGTCCCTCGCGAGCGATTCTGGTGGAATCTGA
AGGCGTACAAGTTGCTAGGAAACACTCCGCGAATGGCTTCAATGCAGATT
GCAGGGTTTCTTTTCCGAGCGGGGAGCGGACAGGGAGTGCGAGCAACCGC
GGGATATTTCGAGATCGCCGAAGGTTCG
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