mRNA_P-littoralis_Contig75.17.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.17.2
Unique NamemRNA_P-littoralis_Contig75.17.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: D8LG07_ECTSI (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG07_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 8.620e-124
Identity = 188/230 (81.74%), Postives = 210/230 (91.30%), Query Frame = 3
Query:  207 KVVVFGGNGFVGQNVCQAALLMGADVVSVNRSGAPAGRDKVWKDNVRWVQGDIFKPELYAAELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISAAGAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGSVTVPLGAWMRPMEMLFSLAPFSALRSASALEAVLTPPVAVENVARVAAAGALGLSPKAGVLLVDDINQIAKE 896
            +V+VFGG+GFVGQNVCQAAL MGADVVSVNRSGAP G+DK WKD VRWVQ DIFKPE YA ELS A GVVSCVGAFGS++Q+EKICGDATVAATEAAEKA VE FVFISAAGAQH+H ++ GYWKGKQKAEKAILERFP+GGV+LRAPGIYGDRDVG VT+PLGA MRPMEMLF+LAPF+A+RS+S LEA+LTPPVAVENV+RVAAAGALGL P  GVLLVDDIN++A +
Sbjct:    9 QVIVFGGSGFVGQNVCQAALRMGADVVSVNRSGAPTGKDKAWKDKVRWVQADIFKPEDYAVELSGAAGVVSCVGAFGSDQQVEKICGDATVAATEAAEKADVERFVFISAAGAQHDHPVMKGYWKGKQKAEKAILERFPDGGVVLRAPGIYGDRDVGPVTIPLGALMRPMEMLFNLAPFAAVRSSSPLEAMLTPPVAVENVSRVAAAGALGLVP-GGVLLVDDINRLATD 237          
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: A0A835ZEQ4_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ4_9STRA)

HSP 1 Score: 236 bits (603), Expect = 6.000e-70
Identity = 133/231 (57.58%), Postives = 164/231 (71.00%), Query Frame = 3
Query:  207 KVVVFGGNGFVGQNVCQAALLMGADVVSVNRSGAPAGRDKVWKDNVRWVQGDIFKPELYAAELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISAAGAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGSVTVPLGAWMRPMEMLFSLA-PFSALRSASALEAVLTPPVAVENVARVAAAGALGLSPKAGVLLVDDINQIAKE 896
            +VVVFGG+GFVGQ+VCQAAL +G DVVS +RSG+P      W  +V+W++GDIFKPE YAAEL  ATGVV+CVGAFG++E ME++CGDA VAA EAA  A V +FVF+SAAGA   H LL GY+ GK KAE A+   +P+ GV LR   IYGDR V  V VPLGA   P+E + SL  PF+ALR  S  EA  TPP  V  V R AA  ALG + +A +L V+DIN++A +
Sbjct:   77 QVVVFGGSGFVGQSVCQAALALGCDVVSFSRSGSPEQAPS-WASDVQWLKGDIFKPEDYAAELVGATGVVTCVGAFGTDEFMERVCGDANVAAAEAAAAARVPHFVFVSAAGAARAHLLLRGYYAGKAKAEAAVARLYPDTGVCLRPGAIYGDRVVRGVRVPLGAVFAPLERVLSLGGPFAALRD-SPFEAAFTPPADVRAVGRAAALAALGRADRA-LLSVEDINRLAAD 304          
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: A0A4D9D7P2_9STRA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7P2_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.690e-57
Identity = 119/237 (50.21%), Postives = 152/237 (64.14%), Query Frame = 3
Query:  216 VFGGNGFVGQNVCQAALLMGADVVSVNRSGAPAGRDKVWKDNVRWVQGDIFKPELYAAELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISAAGAQHEHALLAGYWKGKQKAEKAILERFPEG-GVILRAPGIYGDRDVGSVTVPLGAWMRPMEMLFSLAPFSALRSA-SALEAVLTPPVAVENVARVAAAGALGLS-------PKAGVLLVDDINQIAKEV 899
            V GG+G+VGQ+V QAAL  GAD VS+NRSG P      W   V+WV  DIF    +  EL  ATGVVSC+GAFGSNE MEKI GDA V A E A K  V +FV++S         LL GY+ GK++AE+A+L  FP G G++LR   +YG R VG +++PL    RP+E+LF   PF +LR      +A+L PPVAV+ VA VAAAGA+G +        + GVL VDDI ++A+EV
Sbjct:   73 VLGGSGYVGQHVLQAALYRGADAVSINRSGIP-NTSGSWLSQVKWVAADIFNSSAWNKELEGATGVVSCIGAFGSNEFMEKINGDANVLAAEVAAKMKVPHFVYVSTVENNLPDFLLKGYFHGKRRAEEAVLSSFPGGRGLVLRPSFVYGTRAVGPISLPLAVVGRPLELLFRFPPFPSLRQTLPGTQALLAPPVAVQAVASVAAAGAMGDTRVKAGEGAREGVLSVDDIVRVAREV 308          
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: A0A7S2USW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USW7_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.570e-52
Identity = 110/255 (43.14%), Postives = 156/255 (61.18%), Query Frame = 3
Query:  153 IRALSQGQGTSSQKDDIPKVVVFGGNGFVGQNVCQAA-LLMGADVVSVNRSGAPA--GRDKVWKDNVRWVQGDIFKPELYAAELSDATGVVSCVGAFGS-NEQMEKICGDATVAATEAAEKAGVENFVFISAAGAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGS-VTVPLGAWMRPMEMLFSLAPFSALRSA-SALEAVLTPPVAVENVARVAAAGALGLSPKAGVLLVDDINQIAKEV 899
            +R + +   TSS +    KVVV GGNG+VGQ VC+ A  +M  +VVS++RSGAP   G +K W   + W +GD+ +   +   L  ATGVVSC+GAF S N+ ME   GD  +AA + A+ AGV NFVF+S         +LAGY+KGK++AE  +LE FP+ GV+LR   +YG R VG  +++PL    +PM+M+FS  PF  L S     +A+L  PV VE V   AAAGA+    + G++   D+ ++AK +
Sbjct:   10 VRNVLRSLSTSSNQSTEQKVVVLGGNGYVGQQVCKMAKTMMNCEVVSISRSGAPNFDGAEK-WTQEISWEKGDVLEASTWKDHLDGATGVVSCIGAFASTNDAMEYANGDTNIAAAKTAKAAGVANFVFVSTVENNLPEFVLAGYFKGKRRAEDQVLESFPQTGVVLRPSFVYGSRAVGKGISIPLWLVGKPMDMIFSTPPFEVLASTLPGAQAILAAPVPVETVGLCAAAGAVAKLGQTGIVSTKDMKRLAKAL 263          
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: I0Z248_COCSC (NAD(P)-binding protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z248_COCSC)

HSP 1 Score: 182 bits (463), Expect = 2.150e-50
Identity = 103/228 (45.18%), Postives = 137/228 (60.09%), Query Frame = 3
Query:  204 PKVVVFGGNGFVGQNVCQAALLMGADVVSVNRSGAPAGRDKVWKDNVRWVQGDIFKPELYAAELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISAAGAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGSVTVPLGAWMRPMEMLFSLAPFSALRSASALEAVLTPPVAVENVARVAAAGALGLSPKAGVLLVDDINQI 887
            PK+V+FGGNGFVG  VC+ AL  G  VVSVNRSG P  +   W   V WVQ D+F    +  +L  A GV+SC+GAFGSN+ M+KICGD+ +     A  AGV    FIS        A+L GY++GK++AE+ +  +FP+GGV LR   IYG R+VG V +PLGA   P++ +  + P  +L     L A   PPV+V  VA+ A   A   S +AG+L   D+ QI
Sbjct:    4 PKLVIFGGNGFVGSRVCEEALKTGLSVVSVNRSGPPK-QSADWVKGVEWVQADVFDVSSWRDQLKGAVGVISCLGAFGSNDFMQKICGDSNITVFNEAADAGVPRAAFISVHDYGFPGAVLPGYFQGKKRAEELLALKFPQGGVALRPGFIYGTRNVGGVGIPLGAIGYPLDKVLGVLPTKSLAGVPLLGAGFVPPVSVAAVAKAAVTAATDPSVEAGIL---DVWQI 227          
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: A0A388KKI2_CHABU (NAD(P)-bd_dom domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KKI2_CHABU)

HSP 1 Score: 184 bits (467), Expect = 3.100e-48
Identity = 101/230 (43.91%), Postives = 147/230 (63.91%), Query Frame = 3
Query:  207 KVVVFGGNGFVGQNVCQAALLMGADVVSVNRSGAPAGRDKVWKDNVRWVQGDIFKPELYAAELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISAAGAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGSVTVPLGAWMRPMEMLFSLAPFSALRSASALEAVLTPPVAVENVARVAAAGALGLSPKAGVLLVDDINQIAKE 896
            K+VVFGGNGFVG ++C+ AL  G  V SVNRSG PA R + W   V WV+GD+F P+++  +L DA+GVVSC+G FG+N++M +I G A V A +AA +  V+ FV ISA        +L GY++GK+ AE+A+  +FP GG+ILR   I+G+R+VG++TVPL     P+E +     F+   +   + +VL PPV    VA+ A   A   +   G+L V  IN++A++
Sbjct:  251 KLVVFGGNGFVGSHICREALSRGIHVTSVNRSGPPA-RQEPWLKEVEWVRGDVFDPDVWRMQLRDASGVVSCIGGFGTNDEMRRINGHANVKAVQAAAEEDVKRFVLISAHYFSVPAIILRGYYEGKRIAEEAVRSKFPYGGIILRPGFIHGNRNVGNLTVPLSVIGGPLEAVMRSRAFTWTSNLPIVGSVLLPPVKATAVAKAAVRAATDNAIPPGILDVWSINRLAEK 479          
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: A0A8J9SCH8_9CHLO (Uncharacterized protein At1g32220, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SCH8_9CHLO)

HSP 1 Score: 179 bits (454), Expect = 3.850e-48
Identity = 106/256 (41.41%), Postives = 149/256 (58.20%), Query Frame = 3
Query:  135 APRMFSIRALSQG-QGTSSQKDDI----PKVVVFGGNGFVGQNVCQAALLMGADVVSVNRSGAPAGRDKVWKDNVRWVQGDIFKPELYAAELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISAAGAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGSVTVPLGAWMRPMEMLFSLAPFSALRSASALEAVLTPPVAVENVARVAAAGALGLSPKAGVLLVDDINQI 887
            AP + S    S   +GT SQ+ +     PK+V+FGGNGFVG  VC+ A   G  VVSVNRSG P  +   W   V WV+ D+F    +  +L+ A GV+SC+GAFGSN+ M+KICGD+ +     A +AGV    FIS        A+L GY++GK++AE+A+  RFP+GGV LR   IYG R+VG + +PLGA   P++ +  + P  +L     + A   PPV+   VA+ A       + +AG+L   D+ QI
Sbjct:   56 APSLSSTTTASTAAEGTFSQQSEEFMGPPKLVIFGGNGFVGSRVCEEAFKTGLSVVSVNRSGPPK-QSADWIKGVEWVKADVFDVGSWRDQLNGAVGVISCLGAFGSNDFMQKICGDSNITVFNEAAQAGVPRAAFISVHDYGFPSAVLPGYFQGKKRAEEALALRFPQGGVALRPGFIYGTRNVGGLGIPLGAIGYPLDKVLGVLPTKSLAGIPLVGAGFVPPVSARAVAKAAVTATTDPAVEAGIL---DVWQI 307          
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: A0A2P6U1X6_CHLSO (NAD dependent epimerase dehydratase family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1X6_CHLSO)

HSP 1 Score: 180 bits (456), Expect = 6.150e-48
Identity = 109/238 (45.80%), Postives = 139/238 (58.40%), Query Frame = 3
Query:  201 IPKVVVFGGNGFVGQNVCQAALLMGADVVSVNRSGAPAGRDKVWKDNVRWVQGDIFKPEL-YAAELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISA------AGAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGSVTVPLGAWMRPMEMLFSLAPFSALRSASALEAVLTPPVAVENVARVAAAGALGLSPKAGVLLVDDINQIAK 893
            +PK+VVFGGNGFVG  VCQ  L MG  VVSVNRSG P      W D V WVQGD   P++ +   L  A GVVS +GAFGSNE M K+CG A +   +A  +AGV  F FIS        G   +  LL GY++GK+ AE+ + +R P GGV LR   IYG R VGS  + LG    P+++  SL P  +L +   + A   PPV+V+ VAR A + AL  S   GV+   D+ QI +
Sbjct:  116 LPKLVVFGGNGFVGSRVCQQGLAMGCGVVSVNRSGRPRNLRGDWLDQVEWVQGDALDPQVAWRDVLKGAAGVVSTLGAFGSNEHMYKVCGTANMRLVDAVVEAGVPRFAFISVHDYKFPGGWHAQDFLLRGYFQGKRDAERYMEDRLPSGGVALRPGFIYGTRAVGSANLHLGWVGAPLKVALSLLPTRSLANIPIIGAGFVPPVSVDAVARAAVSAALDPSVPPGVM---DVWQIGR 350          
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: A0A7S0WUV3_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WUV3_9CHLO)

HSP 1 Score: 176 bits (447), Expect = 1.710e-47
Identity = 120/280 (42.86%), Postives = 153/280 (54.64%), Query Frame = 3
Query:   66 SPTISSLTMLLVRRSTAAVPAKRAPRMFSIRALSQGQGTSSQKDDIPKVVVFGGNGFVGQNVCQAALLMGADVVSVNRSGAPAGRD-KVWKDNVRWVQGDIFKPELYAAELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISAAGAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGSVTVPLGAWMRPMEM-LFSLAPFSALRSASALEAVLTPPVAVENVARVAAAGAL---GLSPKAGVLLVDDINQIA 890
            S  +SS+  LL R S      K A  +  +R  +      +Q     KVVVFGGNG+VG  VC++ L MG  V S+NRSG     +   W   V WV+GD  +PE +  +L+ ATGVVSCVGAFGSN  MEK+CGDATV+  EAA+ A V+NFVFISA   Q    +L+GY  GK+KAE+A+   FP  G  LR   I+G R V  V V L     P+E  L      + L S   L  ++ PP  VE+VA VAA  A    G     G +   DI + A
Sbjct:    3 SRIVSSVRSLLPRASQVISSTKSAQEVAGVRGFAASASPGNQA----KVVVFGGNGYVGSYVCKSLLSMGVAVTSINRSGQITYPEWDHWWHKVNWVKGDALEPEEWKDKLAGATGVVSCVGAFGSNAYMEKVCGDATVSMVEAAKAAKVKNFVFISAHDYQLPSFVLSGYVAGKKKAEEAVASHFPTSGFSLRPGFIHGTRYVNGVPVFLSTIGGPLETALRGENAMNLLESQPKLATIMVPPTKVEDVASVAAQAAATGAGAGIPVGPISAWDIPKYA 278          
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Match: A0A1Y1HXQ8_KLENI (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXQ8_KLENI)

HSP 1 Score: 176 bits (447), Expect = 1.170e-46
Identity = 94/230 (40.87%), Postives = 144/230 (62.61%), Query Frame = 3
Query:  207 KVVVFGGNGFVGQNVCQAALLMGADVVSVNRSGAPAGRDKVWKDNVRWVQGDIFKPELYAAELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISAAGAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGSVTVPLGAWMRPMEMLFSLAPFSALRSASALEAVLTPPVAVENVARVAAAGALGLSPKAGVLLVDDINQIAKE 896
            +++V GGNGFVG ++C+AA+  G  V S+NRSG P   +  W  +V W++G++F+P  +   L D  GV+SCVGAFGS E M+++CGDA V A   A + GV+ FVFISAA       +L GY++GK++AE+AI E+ P GG+I R   I+G+R VGS+T+PLG    P+E +F  +    +     +  ++ PP+ VE +A+ A   A       G++ V  I+++A+ 
Sbjct:  123 RLLVIGGNGFVGGHICKAAVEKGYKVSSLNRSGPPQHSES-WVKHVDWIRGNVFEPPSWRHSLKDVQGVISCVGAFGSYETMKRVCGDANVTAVNTAAEEGVKRFVFISAADMGLPTFVLRGYFEGKREAERAIREKLPYGGIIFRPSFIHGNRRVGSLTLPLGLVGSPLEAIFKSSAGKWVHGLPLVGPLIVPPINVETLAKAAVLAAKNNVVPPGIMDVWQISRLAER 351          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.17.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG07_ECTSI8.620e-12481.74NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A835ZEQ4_9STRA6.000e-7057.58NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
A0A4D9D7P2_9STRA2.690e-5750.21NAD(P)-bd_dom domain-containing protein n=2 Tax=Mo... [more]
A0A7S2USW7_9STRA2.570e-5243.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I0Z248_COCSC2.150e-5045.18NAD(P)-binding protein n=1 Tax=Coccomyxa subellips... [more]
A0A388KKI2_CHABU3.100e-4843.91NAD(P)-bd_dom domain-containing protein n=1 Tax=Ch... [more]
A0A8J9SCH8_9CHLO3.850e-4841.41Uncharacterized protein At1g32220, chloroplastic n... [more]
A0A2P6U1X6_CHLSO6.150e-4845.80NAD dependent epimerase dehydratase family n=1 Tax... [more]
A0A7S0WUV3_9CHLO1.710e-4742.86Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A1Y1HXQ8_KLENI1.170e-4640.87NAD(P)-binding Rossmann-fold superfamily protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:52471..58071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LG07
PFAMsAx_dynein_light,NAD_binding_10
Model size1702
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010287,GO:0016491,GO:0016651,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663
Exons6
Evalue2.56e-128
EggNOG OGsCOG0702@1|root,KOG4288@2759|Eukaryota
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-21_005050.1
Descriptionubiquinone-6 biosynthetic process
Cds size813
COG categoryGM
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.17.2prot_P-littoralis_Contig75.17.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 53271..57982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.943023-UTR-P-littoralis_Contig75:52470..532701680791544.943023-UTR-P-littoralis_Contig75:52470..53270Pylaiella littoralis U1_48UTRP-littoralis_Contig75 52471..53270 -
1680791545.028587-UTR-P-littoralis_Contig75:57982..580711680791545.028587-UTR-P-littoralis_Contig75:57982..58071Pylaiella littoralis U1_48UTRP-littoralis_Contig75 57983..58071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.9590254-CDS-P-littoralis_Contig75:53270..534501680791544.9590254-CDS-P-littoralis_Contig75:53270..53450Pylaiella littoralis U1_48CDSP-littoralis_Contig75 53271..53450 -
1680791544.9709666-CDS-P-littoralis_Contig75:54304..544101680791544.9709666-CDS-P-littoralis_Contig75:54304..54410Pylaiella littoralis U1_48CDSP-littoralis_Contig75 54305..54410 -
1680791544.980288-CDS-P-littoralis_Contig75:54747..548601680791544.980288-CDS-P-littoralis_Contig75:54747..54860Pylaiella littoralis U1_48CDSP-littoralis_Contig75 54748..54860 -
1680791544.9931388-CDS-P-littoralis_Contig75:55578..556891680791544.9931388-CDS-P-littoralis_Contig75:55578..55689Pylaiella littoralis U1_48CDSP-littoralis_Contig75 55579..55689 -
1680791545.0037227-CDS-P-littoralis_Contig75:56494..566771680791545.0037227-CDS-P-littoralis_Contig75:56494..56677Pylaiella littoralis U1_48CDSP-littoralis_Contig75 56495..56677 -
1680791545.0141525-CDS-P-littoralis_Contig75:57862..579821680791545.0141525-CDS-P-littoralis_Contig75:57862..57982Pylaiella littoralis U1_48CDSP-littoralis_Contig75 57863..57982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.17.2

>prot_P-littoralis_Contig75.17.2 ID=prot_P-littoralis_Contig75.17.2|Name=mRNA_P-littoralis_Contig75.17.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=271bp
MLLVRRSTAAVPAKRAPRMFSIRALSQGQGTSSQKDDIPKVVVFGGNGFV
GQNVCQAALLMGADVVSVNRSGAPAGRDKVWKDNVRWVQGDIFKPELYAA
ELSDATGVVSCVGAFGSNEQMEKICGDATVAATEAAEKAGVENFVFISAA
GAQHEHALLAGYWKGKQKAEKAILERFPEGGVILRAPGIYGDRDVGSVTV
PLGAWMRPMEMLFSLAPFSALRSASALEAVLTPPVAVENVARVAAAGALG
LSPKAGVLLVDDINQIAKEV*
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mRNA from alignment at P-littoralis_Contig75:52471..58071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.17.2 ID=mRNA_P-littoralis_Contig75.17.2|Name=mRNA_P-littoralis_Contig75.17.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5601bp|location=Sequence derived from alignment at P-littoralis_Contig75:52471..58071- (Pylaiella littoralis U1_48)
CTTGTATCATACACAAACTATATCCGCTGTTTCATACCTTCTACACACCT ACTCGGCTCGGCCATTCTCCCACAATCTCATCTCTTACCATGTTGCTTGT ACGACGATCTACTGCTGCTGTACCAGCAAAGCGGGCGCCGCGCATGTTTA GCATCCGAGCACTTTCACAGGGCCAGGGTACCTCGTCTCAAAAGGATGAT ATTCCAAAGGTGTGAAATGAGTCAGATTTAATGTGCTTGTATTATAATGC CTGGTTCATTCACACAGCACTTCGAATATACTCGTACAGAGCTCGACTAC AGCAGTATACACCCAAACCCATACAGCAGTGATAATGCCTGGTACAGCAT TCGAGTACTTCGAATATACTCGTACAGAGCTCGACTACAGCAGTATACAC CCAACCCCATACGCTTTGTACTCCGTCCAAAACCAGCAGCATGACGGATC TATCTGCACTTGCGCACAGAGTAGCGCCATCTTGGCTGTTTGTTAGACTT GTGTGTATGCGTTTTGAGAATTTTCGGCGTCGAAGCTAAAATAAAATACA GCGGTCGAGGCCAAATTGCTTGAGTATTTTCGACGTGTATACGTATACGT ATGAATACAACAGTCCCGTCGACGAGGTGAAGGAACGGTTGAACACCCCT GCTCGCGATAAAAAGCTGAGGAGCAAGAGAATACACGGACCTCGAAGATT GGGGGAGGAAAATGAAAAATAAAACTCCTGTTTGACCTTCCTTCGGTGTG ACCCCGGCTGGTTCACCCACTTCATACCGAAAGGTGTAGACTGCTGCCCA GAATGATGGGAGGAAAACACATACCGGTACACACACGTGGTGCAGAGTAC AGAGTGACGCCCTGTCTGCGGAGGTGTGCACCACAAGCCACATGCATCAC CGGGTTTTCGCTTGGTGATCATATCTTATCGATGATTGATACTAGCAGTC GTATGTTATTTGTGCACAAGATCATGGCAGTGTCACAACGAGCAGAATGT CCACAAAAGTTCGGATCAAGCTTTCCAACATTATTTGTAGAGCGCTGACT TGAGGTTCGAGCGACGGAGTTGGCTACTCGTTCGAACACAAAATGGGGCG CCGTTTCGATTGCGCGACTCTCTGTATCAGTGTGCCACACGTACTTCGAA GTGCATCCCGGGAGTAAATTTGATCTTCTGTACAACGGGGCGGAGGGGCG AGATGTGAGCAAAACTTCTTGTCAGGGACACTCATGGAACTCTCTGCATA CAGCATCTGGCGAAAGAAACACGTCGCATGACGAAAGCGGTGGAAGCAAC ACCCCACGTATTGTCCGCAGATCGTTGGTATGTGGCGCGTGCGCGGGAAC AAGAAACGCTGACTGACCGAAGTCCCTTCACTTGATAAAAACAGGTCGTT GTGTTCGGCGGTAACGGCTTCGTCGGTCAGAACGTTTGCCAGGCGGCCCT CCTCATGGGGGCTGACGTGGTGAGTGTCAACAGGAGCGGCGCCCCCGCCG GCAGGGATAAAGTCTGGAAAGACAATGTGCGGTGGGTCCAAGGGGACATC TTCAAGCCGGAGCTTTACGCTGCAGAGGTGTGTGCCGGCGGTACGTGCTG CTACTACACTGTTGTTTACATCACAGCAGACAGGCAGGCAACATTTTTAT CAACAAACAAACCTATTGTGACCGTTTGTGAGTACAACTCCCCGGGTTCT TCTACATAGATGACTGGGTCACAGGCAGGCTTCAAATGCGATCTAGTCAT TCCAACACATTTAGACCCGAAGAGAAATACTTATATAATGTCTGGAGCTA TCATACCGCTTTATCCTTCGCTGTAGCATCTGCACTGGATGTGTCCCTTG CTATTTTGTCTCAACACATTTGAAGCACAGCGGTGTTGAACGGTTTGATT ACCGGCCAGATGTTGGCATGCTTGATCAATGTTGTGCTGCGAAGAGCAAT AAAGCTAGGTGGTATTCAGCACTGCATTCACTGCTGTTGACGGATGCGAA AATCGTCCGCCGCGATGCGATTCGGGTATTACTTCGATCGCGGGCTGTTG GGGTGTTTGGAAGCTGGCTGCTAACGGGTCGGAGTATGCGGAAAGATCGA CTGCGGTTTCACAACCGTACCTCAGTGTTATTTTTTTCGATCGCAACCGT GGGGAAACGTCAAAGTTTGGGGTCTACCCCAGAACCCACAATGTTCAAGT GTACTCTTGGCCCTGATTGTACTGCCGCAGTCCACACGCCCCCAAATCAG CACTGGTGTTCGCATTTACCTGCCTCCTCCCCCCCCCCCCCCTCCCTCTC CTCCTTCTCCCGGGTCAATTCTGAATGATCTCATGTCGTATTGCTGCTTT GCCGTTGGCGTTTTTACTCGGCCCGTGTCCAGCTGTCTGACGCAACTGGA GTGGTTAGCTGCGTGGGTGCCTTCGGATCGAACGAGCAAATGGAAAAGAT TTGTGGGGACGCTACGGTCGCAGCGACGGAAGCGGCTGAAAAGGTGTCAA TGAGTCGGCGAAGCGCGCTACATACGATAGGGAATGGGCAAGGGGGGTAA GGGGGGTGCTTCGAACTCGAAACCTCTAGGCTAGCCTGATAGATCGCAAC ACCACTGATTTTCAAGTATTCCCCTGTCGTTCCACGTCACTACTGTTGTA CTAGAGCACAGAGCATGATATGGACGTAGAATCTCGCTTTCGGGGCCTCT TCAACTGAGCAGTTCTAATACTTATTTGGCAGCCCCCCTTTCCGTGCCAT AACCCGAACGTTGGTCTTCGCCGGTTTGTCGCCTGGATCATCCGACCCGG TTCGTCATCGTCATGAATGCTCAGAAAACAATAATCCATCGCACAAGTAG TCACCAGCAGCAACGAAACGGCACCGTGATGTATGTGGAGTTCGTCGCGC CGTTCCAAGGAAACTCTCCTGAGCCCACCCACTCAACGACATGCAGAAAA AACCATCTCAAGCGTGAACAATCCCTTGTAGATCCTGTATCATACGCATG TATGTATGTTGCGAACAAAAAGTAGGCGTGTTCTTCAACTTCTGCTGAGA CCTTCGATTTCTCTTCGCTGGTGCGCTTCGCTCGCCGAAGATAACCCTCT CGCACAAATGGTTTTCTAATTTTGCTCGCCCCCCTCTCCCCAACCCCCCA CCCGCCTGCCATGAACCTACCTCTGTTGGTACTGACGCATCGGGGGTAAA TTCATGCGAAGGCGGGCGTAGAAAACTTTGTTTTCATCTCCGCGGCAGGA GCGCAGCATGAGCACGCGCTGCTCGCGGGGTACTGGAAGGGCAAGCAAAA GGCCGAGAAAGCCATCCTAGAACGGTGAGTGCGTTGGTTCGAAAATACAC ACACGCACACGCACATGGACTGCGGGAGCGATTTTAAGCGTGTTCAGGGA GCCGGGATTAGTCTATTCCTCACCTCCCAGCCTGAATTCGCGCGGAATGG TTTGACCGACGGGAGTCTCAGACCTTGAAAGTCGGCTCACACCATGAACA TGAAGCTTCTTTGGGATATTGTATGAAGATGGGCCATCGGTGTCGAATAC CGAGTGGATCAATCAACTACTATGCGCGGACGAGGCATACCTTCGAGAAC AACGGCGCCGAGGCGAGTATGTCCTTCACATCTTACACGAAATAAATGCT TGTTTGCACAGATTTCCGGAAGGAGGGGTCATTCTGCGTGCACCCGGTAT CTACGGAGATAGAGATGTGGGATCCGTTACGGTGCCGCTCGGAGCATGGA TGCGGCCGATGGAGATGGTAAGCCCAAGGGTCATGGCGCTTGACGTACAG CAGTACATATGAGATAGGCATGACACGTGGACATGTAGGTCACGAATTTC AAGGAGGCCATCCTGGCTGTCATATTTTCAGGCGCGCAAGAGTTAAGGCT GTGCAGTAGCACCCACGGGAAATTCACGATACGGTGTGTGGCTCTCGAGA TAGGATAAAAGGTACGGCATGGGTTATCGCTGCTTGAGGGTTGAAAACCC TCGGCAAAAAAATGCCCAGCAGCCTTACAACAGTCGCACGCGCCCCGACA TTGTAGTTTGGTTTAATGTGCATCATGTCCACTCAGCTAAGAATGGTGCA CCTCTAACCGAACAAGAATACTTCGGTATGACAAAACCAAAACGATCGCC GTTGTTGCCACAAGCACCACCGTTCTCCCGCTCTCCACACCTTTGCGGTG TAGGCTGTGACTGTTTTTCTGTCGACGACTGATGTTGCGACGTAGCTTTC TTGCAGGAATTGCTCGATGGCGTACCCAGTGCGTGTTGCGTGTTTAAAGA GGCGAGTGGGCAGCACTAAGTACAGCAAGAACACTCCGGATCGAATAGAC CTGACTTAAAAAAAAGGTTCCGATGCTCAATTATGATGCTCAAGCCCCAC CCCCACCTTAGGGCAAAGCTCAAAAAGTAGAAATTAAAACAACAGGTGGG TGGTAATCATACCCGTTATGCGTCTCTTCAGATCAGAATGCGCGATTACC AATCTCTCTCTGCCTTTCCCCCTCCTTCCCGCTGCTGTTTGTTCTCTTTG CCTTTCTCTGCCAATGTTTTGTGCGCACGCATGTGCTCCTCGCCTCCCCG GCTGTGGAATCCACTTTCCAGCTGTTCAGCTTGGCGCCTTTCTCAGCTCT GCGAAGCGCCAGCGCTCTCGAAGCGGTCCTGACCCCACCAGTGGCTGTAG AGAACGTGGCCCGTGTTGCGGCCGCAGGGGCGCTTGGACTTTCACCTAAA GCTGGAGTGTTGCTAGTTGATGACATAAACCAGATTGCGAAAGAGGTTTG ATGTTTTTTTTTCTCTCACGGCTCTTGTCGTTGGCTGTTCGTGGTGTGTA CTGGTACCTCACATGGTTTGTCTTCGGTGGATGAGGTAAGGCCCCCCCGG GGCTGACGCAAGATTTCGTGCCAAAAACCGACTTGCGCGAAGGGTCTGTT AACAGCAAAGCCCTTACGGCGAAAGGCTTCTTATTGTTTCTGGTGACGGA CACTTTCTGATGGAATTATTTTTGAGGGCAAGTACGAGGTATTCTTGTGA CTACCTGCGCAAGAAACGTGACGAAAAAGCCTGATGGAATTAGACAGCTT TTGTTGTATTGTTCTTGACTATCACATCATTAGCGTACCGCTTTCGTCTC GCCCGCGGTCACAAATCAGGCACATACTGCTGTGCTACGAGCAAGAGGAA GCATGAAACAACCAAATAAAAGAAGGCCATTGTTAACCTAGGCTACCTCC AGTAGACGGAGCCTCAAAAGGTCCCAAGGGAGTGGTCGTATGGGTCGACG ACCAAGGGCAAGGTAATGTTTTCTTCCGCGATATTTAGCAAGGAGAGTAA CGTAACGCGTGACAGCCAGGGCGGCGTCAGGGTCGTCCCGTTGTCCACCG AAAGGAAGAGCCAACGATCCACCGATCTATCAGGAGGTCCGCAGGCTCGA CTGGAATACCCCGAGAGGCGAAGCTTCACATCTTGTATGTGCATTCAGCA GTGGTTGATGGTTTTGATGTCACTACAGCTGGTATCCACCCAACAGAAAA AGAAAAACAGGCCCAATTACCGCCCAACCAAGGAGCATGTGTGTGTTGGG G
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:52471..58071-

>mRNA_P-littoralis_Contig75.17.2 ID=mRNA_P-littoralis_Contig75.17.2|Name=mRNA_P-littoralis_Contig75.17.2|organism=Pylaiella littoralis U1_48|type=CDS|length=813bp|location=Sequence derived from alignment at P-littoralis_Contig75:52471..58071- (Pylaiella littoralis U1_48)
ATGTTGCTTGTACGACGATCTACTGCTGCTGTACCAGCAAAGCGGGCGCC
GCGCATGTTTAGCATCCGAGCACTTTCACAGGGCCAGGGTACCTCGTCTC
AAAAGGATGATATTCCAAAGGTCGTTGTGTTCGGCGGTAACGGCTTCGTC
GGTCAGAACGTTTGCCAGGCGGCCCTCCTCATGGGGGCTGACGTGGTGAG
TGTCAACAGGAGCGGCGCCCCCGCCGGCAGGGATAAAGTCTGGAAAGACA
ATGTGCGGTGGGTCCAAGGGGACATCTTCAAGCCGGAGCTTTACGCTGCA
GAGCTGTCTGACGCAACTGGAGTGGTTAGCTGCGTGGGTGCCTTCGGATC
GAACGAGCAAATGGAAAAGATTTGTGGGGACGCTACGGTCGCAGCGACGG
AAGCGGCTGAAAAGGCGGGCGTAGAAAACTTTGTTTTCATCTCCGCGGCA
GGAGCGCAGCATGAGCACGCGCTGCTCGCGGGGTACTGGAAGGGCAAGCA
AAAGGCCGAGAAAGCCATCCTAGAACGATTTCCGGAAGGAGGGGTCATTC
TGCGTGCACCCGGTATCTACGGAGATAGAGATGTGGGATCCGTTACGGTG
CCGCTCGGAGCATGGATGCGGCCGATGGAGATGCTGTTCAGCTTGGCGCC
TTTCTCAGCTCTGCGAAGCGCCAGCGCTCTCGAAGCGGTCCTGACCCCAC
CAGTGGCTGTAGAGAACGTGGCCCGTGTTGCGGCCGCAGGGGCGCTTGGA
CTTTCACCTAAAGCTGGAGTGTTGCTAGTTGATGACATAAACCAGATTGC
GAAAGAGGTTTGA
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