mRNA_P-littoralis_Contig75.168.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.168.1
Unique NamemRNA_P-littoralis_Contig75.168.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:618271..619418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size445
Hectar predicted targeting categoryother localisation
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791553.3580635-CDS-P-littoralis_Contig75:618272..6183101680791553.3580635-CDS-P-littoralis_Contig75:618272..618310Pylaiella littoralis U1_48CDSP-littoralis_Contig75 618273..618310 -
1680791553.3709965-CDS-P-littoralis_Contig75:619015..6194181680791553.3709965-CDS-P-littoralis_Contig75:619015..619418Pylaiella littoralis U1_48CDSP-littoralis_Contig75 619016..619418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.168.1prot_P-littoralis_Contig75.168.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 618273..619418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.168.1

>prot_P-littoralis_Contig75.168.1 ID=prot_P-littoralis_Contig75.168.1|Name=mRNA_P-littoralis_Contig75.168.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
NTAAACSSIYCCSSGWNPAPTAVAVGPGSGKRRLTSGVWRFMQRFEPPDQ
KGRNVKCIATIKLPPSAGGQLPARTRVCGALFKQAQTNRSAQVSGTGTTG
LKNYTQKCHPSEFAMLDEGRASKAVKNERGTILAAAGDSKTAKRGPL
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mRNA from alignment at P-littoralis_Contig75:618271..619418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.168.1 ID=mRNA_P-littoralis_Contig75.168.1|Name=mRNA_P-littoralis_Contig75.168.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1148bp|location=Sequence derived from alignment at P-littoralis_Contig75:618271..619418- (Pylaiella littoralis U1_48)
AACACAGCAGCAGCCTGCTCCAGCATCTACTGCTGTTCCTCCGGTTGGAA
CCCCGCACCGACAGCAGTCGCAGTCGGGCCTGGTAGTGGCAAGCGCAGAC
TGACGTCTGGGGTTTGGCGTTTCATGCAACGCTTCGAGCCACCTGACCAA
AAAGGGCGGAACGTCAAGTGCATTGCGACCATAAAACTTCCCCCGTCTGC
TGGAGGGCAGTTGCCTGCTCGCACTAGGGTGTGTGGAGCACTCTTCAAGC
AAGCACAGACCAACCGATCTGCTCAAGTAAGTGGAACAGGGACGACTGGC
TTGAAGAATTACACTCAGAAATGTCACCCGTCGGAGTTTGCCATGTTGGA
CGAGGGCCGCGCCTCCAAGGCAGTGAAGAACGAGAGGGGCACCATCCTGG
CAGGTGAGGGATAAGCTGTGCTGGCCCTCCTCGTAGGATGGCTGTGTGCA
GCTACACAAACGGTTGCTTACAGCAGTAACATAGTTGTACCCCGAAACAA
ACAAAACACTGGCAAAAAAAACATAAAAACAATTCATAGTGGCGAGTCCT
ATTCTTTACTTACGCTATTTGTTGTTCAGTACTGCTGTGAGACTACTGCT
GAAAGTCTATAAGTTTAGTACACCTATTTATCATTTATATTGTTTGTCGT
CGTTGTACTTTGTTCGATGTTTCATACCAGCTATGATGTACTGCTGTATA
GTATACTCCGTGTGTTATATACTGGAGTATATATTATACATACTTCGTGT
TGTATTGCGTCTATTTACACTCGTACGAAGTGTAACAGCAGCACGCACTA
GCTACAGCTCTCCCCACTCGTGTAGGTCTCCGTGAACTACTCTACTGCTG
CACCCGGATGTATGCCTATGGTCTAATGCTCTTGAAAATGATATGCAAGG
ATGTGCAGCTGTACCTCGCACAGAGTATTGTAACCGGTACCATGCCATGA
CGGATACGACTGTCTGAACTATTGATACTTGTACCACTGCAGCTCTTCTC
ACCTCTAATTGCCGGCTCTCCCTGCTGTCTCCTGGTGATTACAACACCCC
TGCGCTAATATTTTCTGAATTTTTCCTCCGATTCCATTTACACGCGCGCG
TTGTACAGCTGCAGGAGACTCAAAGACAGCCAAGAGGGGGCCTCTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:618271..619418-

>mRNA_P-littoralis_Contig75.168.1 ID=mRNA_P-littoralis_Contig75.168.1|Name=mRNA_P-littoralis_Contig75.168.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig75:618271..619418- (Pylaiella littoralis U1_48)
AACACAGCAGCAGCCTGCTCCAGCATCTACTGCTGTTCCTCCGGTTGGAA
CCCCGCACCGACAGCAGTCGCAGTCGGGCCTGGTAGTGGCAAGCGCAGAC
TGACGTCTGGGGTTTGGCGTTTCATGCAACGCTTCGAGCCACCTGACCAA
AAAGGGCGGAACGTCAAGTGCATTGCGACCATAAAACTTCCCCCGTCTGC
TGGAGGGCAGTTGCCTGCTCGCACTAGGGTGTGTGGAGCACTCTTCAAGC
AAGCACAGACCAACCGATCTGCTCAAGTAAGTGGAACAGGGACGACTGGC
TTGAAGAATTACACTCAGAAATGTCACCCGTCGGAGTTTGCCATGTTGGA
CGAGGGCCGCGCCTCCAAGGCAGTGAAGAACGAGAGGGGCACCATCCTGG
CAGCTGCAGGAGACTCAAAGACAGCCAAGAGGGGGCCTCTT
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