mRNA_P-littoralis_Contig75.161.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE) HSP 1 Score: 119 bits (299), Expect = 7.160e-26 Identity = 76/186 (40.86%), Postives = 94/186 (50.54%), Query Frame = 1
Query: 64 DGGRLWGRFDEAFRVMKRDYNPIWDRFVRGQPGNNLPSGHTSDYAIANLLDGLYARNATSGEAPVQEDDLVESLPGGGGAEVGRSRWRRRRTLEGKVGGKLHRKSLDGGAAEKQ*GEAGEIDGEADGIKHER--EDGDGSSEGL-----SGEAGESIEYPARPTNWMSQYLITYVLSEGPVTARVP 600
+G +LW +FD A MK+ NPIWDR+V+GQPG NLPSG T D AI NLLDGLY++ S E+PVQEDDLVES P G GK + DGGA + + G+ IK ER +D D S +AG+ EYP RP WM L+ Y P + P
Sbjct: 116 NGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAINNLLDGLYSKTKGSAESPVQEDDLVESTPAADG-------------------GKAPEEKADGGAPNEDKPDQEGEKGKTAVIKKERNPDDDDASVXXXXVPSEDEQAGDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDP 282
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 3.520e-20 Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 3
Query: 567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAACRAR 965
LIGRPS SE PDLRTAR TSGP+ R GK+K + +PS+S +L S+AIR FAGAGE QSRA+VKK+ AA+ A AQE+ R + +HT LV A L AVV++Q LDEEAA RAR
Sbjct: 10 LIGRPSSSEDPDLRTARKTSGPKGRGGKQKAK-KGSPSTSDGSGSETSGAYTDV----DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRAR 137
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE) HSP 1 Score: 100 bits (249), Expect = 4.150e-20 Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 3
Query: 567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAACRAR 965
LIGRPS SE PDLRTAR TSGP+ R GK+KV +PS+S +L S+AIR FAGAGE QSRA+VKK+ AA+ A AQE+ + +HT KLV A + L AVV++Q LDEEAA RAR
Sbjct: 10 LIGRPSSSEDPDLRTARKTSGPKGRGGKQKVK-NGSPSTSDGSGSETSGAYTDV----DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 137
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.330e-18 Identity = 65/129 (50.39%), Postives = 81/129 (62.79%), Query Frame = 3
Query: 567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAA 953
LIGRPS SE PDLRTAR TSGP+ R GK+K + +PS+S L S+AIRTFAGA E QSRA+VK + A+ A AQE+ R + +HT KLV A + L AVV++Q LDE+AA
Sbjct: 111 LIGRPSSSEDPDLRTARKTSGPKGRAGKQKAQ-KESPSTSDGSGSETSGAYTEV----GLSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEDAA 234
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.790e-18 Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 3
Query: 567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQR---MSHTEKLVGAAQTLLNAVVAKQRLDEEAACRAR 965
L+GRPS SE PDLRTAR TSGP+ R GK+K + +PS+S +L S+AIR FAG GE QSRA+VKK+ AA+ A AQE+ R +HT KLV A + L AVV++Q LDEEAA RAR
Sbjct: 136 LVGRPSSSEDPDLRTARKTSGPKGRGGKQKAK-KGSPSTSDGSGSETSGAYTEV----DLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 3.470e-17 Identity = 74/169 (43.79%), Postives = 98/169 (57.99%), Query Frame = 3
Query: 567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAACRARELAAEDRRASKIRNLKTSEGNMTSRSRSPPSTSPYV 1073
LIGRPS SE PDLRT R TSGP+ R GK+K R +P +S +L S AIR FAGAGE++SRA+VKK+ A+ A AQE+ R + +HT KLV A + AVV++Q LDEEAA R+ A + +KI +L+ G T R+ + S Y+
Sbjct: 152 LIGRPSSSEDPDLRTTRKTSGPKGRGGKQK-SKRGSPGTSDESGSETSGAYTDV----DLSSNAIRMFAGAGESRSRAQVKKEHEAVAAANAQEQARRVQQTHTGKLVTAVEAWSAAVVSRQALDEEAAHRSHWDYARLAKKAKIDDLRGEVGVHTGRAEGDGTASLYI 315
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.990e-14 Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = 3
Query: 567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAACRAR 965
LIGRPS SE PDLRTAR TSG + R GK+ + +PS+ +L S+AIR FAG GE QSRA++KK+ A + A AQE+ R + +HT KLV A L AVV+ Q LDEEAA R R
Sbjct: 97 LIGRPSSSEDPDLRTARKTSGLKGRGGKQNAK-KGSPSTIDGSGSETSGAYTEV----DLSSSAIRMFAGTGEIQSRAQMKKEHAVVAAANAQEQARRVQQAHTGKLVTAVGALSAAVVSMQALDEEAAHRGR 224
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 2.780e-11 Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 67 GGRLWGRFDEAFRVMKRDYNPIWDRFVRGQPGNNLPSGHTSDYAIANLLDGLYARNATSG--EAPVQEDDLVESLPGGGG 300
G +LW RFD R +K+ YNP+WD FV GQPG+ LPSG + AI LL+G+Y + +G E P++ L E G GG
Sbjct: 123 GKKLWKRFDNIMRALKKFYNPVWDSFVEGQPGDQLPSGSQDEDAIEYLLNGVYHTISNTGNEENPIE---LEERRGGEGG 199
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 2.250e-6 Identity = 52/201 (25.87%), Postives = 85/201 (42.29%), Query Frame = 1
Query: 40 WREIRFSKDGGRLWGRFDEAFRVMKRDYNPIWDRFVRGQPGNNLPSGHTSDYAIANLLDGLYA-----RNATSGEAPVQEDDLVES-----LPGGGGAEVGRSRWRRRRTLEGKV--GGKLHRKSLDGGAAEKQ*GEAGE------IDGEADG--------IKHEREDGDGSSEGLSGEAGESIEYPARPTNWMSQYLITY 564
+ E + KDG ++W R+ +AFR +++D NP++D+ + QPG PSG + LL L+ +N T E +E + + + G + +G+V G + D G E+ AG IDG DG ++ E+ G + E ++YP RP NWM Y +T+
Sbjct: 133 YEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPGGTPPSGEQYADQLDELLQALWEYQCREKNKTV-EVTAEEKEFLRARGPSAAKGXXXXXXXXXXXXXLSSTDGEVVQGTEKEGGGADAGKDEEVAAGAGRAAGSEGIDGSGDGGAGREGQPMEQEQPKTPGEEDDGGSEPESVVQYPERPPNWMPYYFLTF 332 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig75.161.1 >prot_P-littoralis_Contig75.161.1 ID=prot_P-littoralis_Contig75.161.1|Name=mRNA_P-littoralis_Contig75.161.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp MKRDYNPIWDRFVRGQPGNNLPSGHTSDYAIANLLDGLYARNATSGEAPVback to top mRNA from alignment at P-littoralis_Contig75:586962..589433+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig75.161.1 ID=mRNA_P-littoralis_Contig75.161.1|Name=mRNA_P-littoralis_Contig75.161.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2472bp|location=Sequence derived from alignment at P-littoralis_Contig75:586962..589433+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig75:586962..589433+ >mRNA_P-littoralis_Contig75.161.1 ID=mRNA_P-littoralis_Contig75.161.1|Name=mRNA_P-littoralis_Contig75.161.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig75:586962..589433+ (Pylaiella littoralis U1_48)back to top |