mRNA_P-littoralis_Contig749.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig749.9.1
Unique NamemRNA_P-littoralis_Contig749.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig749.9.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.510e-8
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   46 DGVCEGNSREARECTYKTFRNQACYDAARSLNVQGMGVQVRRGKCFEKACQALWPG 213
            D V     R     T+  FRNQ C+DAA+ L   GMGVQ+ R +CF +A +A++PG
Sbjct:   93 DDVVATAERRGVSVTFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPG 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig749.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2E9_9PHAE2.510e-844.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig749contigP-littoralis_Contig749:40955..42757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size223
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791543.9939566-CDS-P-littoralis_Contig749:40956..410641680791543.9939566-CDS-P-littoralis_Contig749:40956..41064Pylaiella littoralis U1_48CDSP-littoralis_Contig749 40957..41064 -
1680791544.0098336-CDS-P-littoralis_Contig749:42646..427571680791544.0098336-CDS-P-littoralis_Contig749:42646..42757Pylaiella littoralis U1_48CDSP-littoralis_Contig749 42647..42757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig749.9.1prot_P-littoralis_Contig749.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig749 40957..42757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig749.9.1

>prot_P-littoralis_Contig749.9.1 ID=prot_P-littoralis_Contig749.9.1|Name=mRNA_P-littoralis_Contig749.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
GHLRRALSGAHSCCLDGVCEGNSREARECTYKTFRNQACYDAARSLNVQG
MGVQVRRGKCFEKACQALWPGEA
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mRNA from alignment at P-littoralis_Contig749:40955..42757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig749.9.1 ID=mRNA_P-littoralis_Contig749.9.1|Name=mRNA_P-littoralis_Contig749.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1803bp|location=Sequence derived from alignment at P-littoralis_Contig749:40955..42757- (Pylaiella littoralis U1_48)
GGGCACCTGCGGCGTGCACTAAGCGGAGCTCATAGCTGCTGTCTCGATGG
AGTCTGTGAAGGCAACAGCCGAGAAGCGCGGGAGTGTACGTACAAGACCT
TCCGCAACCAGGTGTGTGAAACAGCTGAGAAATCGAGTGCGTCGGATCAT
CATGATGTGCAGCGTTAGCCGCAGCACATGCATGCACAAAAGCAGAGATC
AGCAGCAGTACTGCTACAACACTCGAAGTACTTCACGAATCGTGCGCTCC
TGTCTGTGTTTACCATTCTCTTGTGTTACCCCGCCTGGTGGTCCCTCAGA
ACACTTCGTACAGCAGCATACAACGGCAGTAGGTTCGCGTCCGAGACATA
TGGGACTACAACACGCATCATACCTGGTAACAAAGACACACCCACACATG
AACCACAAAAAACACACCCAGACACTAAACGCGGTATGATACAAGTACTG
CTGTAGCAGTGCTGTATGCGGTGTGCTGACTGCGGCGTTGTGTGCGTGCA
CGCCGTACTCTCTCCCTTTTCTTCTCTACCTTCACCTACCTCTGGGATTG
CACGCTCCAGTTTTGAGTATGCATATACTCTACTACCTGTCTTGCAGTCT
CTGTTGCTGCCGTACGTTTGTTGTGCTTTGTGCGGTAATGTGTGCTCGGC
CCTCGCATGGTGTTCTCGATCGCTTTCTCTCTCTTTATATTCATTTCGTG
TGCTGTTTGTCTGCCGTAGCAGTATATCTGCTGCCGAGAGAGACAGGGAG
AGAGAGAGAGCGAGGGCATACCTGTGTGCGTGATTCGCATCAATGTTGTG
TGCTGGTCGCTACAGCAGTACGTACTGCGACTCGCTGTGTATTCGTGTTT
GCTTTCGACTGATGCCGCTGTCTTGCGCTCTGCCTGTGTGCTGCTTCGGT
ACTGCGGCCCGATGGGCCCCTATAAACCTATAAACCTACGTCTGTGCCTG
CTGTCTTGTTTGCCGTTGACCTTATCCCTTTGTTATTTGTGCTGTGTGTC
CAAAGAAGTGGTCGGCAGGCATTATTGCAGGATTTCTGGTGTTTAGTTGC
CAAGGCGTTATGGCAGGTGCAGCAAGTGCAGATAGGGGCTGCCTAAAAAT
ATATCTTCTGCCAAGCCATTTCAAACCTTCACGCCTGTGGGTGCACCCTA
CTTGTCTCTGCGCGAAAAGTATCGTGATGGAACAGCGTAACCTCAAATAG
CCTCTACCCCACGACGGCGTTCCGAAGAAATTAAGTTGTGAAACTTGATG
CCCCCCCCCCCCCTCTTCAGCTAAAGCTAAGGTGCAAGCGGTACCCCTGG
TAACCAACCGCCTGCAGCCAACGCGGCGCACTTTTCACTGGCGGCAGGTC
GTTAATTCGGTGATTATTATGTTTCCTGCTTCCACATGCACCATGACCAA
GATTCGTTATCGGGGACGACACCACGGTCTCCTCCACTTTGTACGAATTT
CGATACGCCTCCACTACCAATAATCCACCAGCAATTTCCCTCTGAATGTA
ACATTTTAGAATCATTGTTAACTACGAATTAGGTTTGTGATGAATCCCCC
GCATGATGTCAATTTATAGTACTTATTTTTGTCAGAGGATGTTTTGCGCA
AGATTTAATCATTTTGCGCTGACGGCCTGCACTTCAAAGCCGCGCCCTAC
CACAACACCCCACACTTTCTTCACCCTGCATGATTTTAAACAGGCGTGCT
ACGATGCGGCGCGTTCTCTGAATGTCCAAGGCATGGGTGTACAAGTTCGT
CGCGGTAAATGCTTCGAAAAGGCATGCCAGGCACTTTGGCCCGGAGAAGC
TCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig749:40955..42757-

>mRNA_P-littoralis_Contig749.9.1 ID=mRNA_P-littoralis_Contig749.9.1|Name=mRNA_P-littoralis_Contig749.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig749:40955..42757- (Pylaiella littoralis U1_48)
GGGCACCTGCGGCGTGCACTAAGCGGAGCTCATAGCTGCTGTCTCGATGG
AGTCTGTGAAGGCAACAGCCGAGAAGCGCGGGAGTGTACGTACAAGACCT
TCCGCAACCAGGCGTGCTACGATGCGGCGCGTTCTCTGAATGTCCAAGGC
ATGGGTGTACAAGTTCGTCGCGGTAAATGCTTCGAAAAGGCATGCCAGGC
ACTTTGGCCCGGAGAAGCT
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