mRNA_P-littoralis_Contig748.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig748.8.1
Unique NamemRNA_P-littoralis_Contig748.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig748.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig748contigP-littoralis_Contig748:21081..23155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size889
Hectar predicted targeting categoryother localisation
Exons4
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791542.4471061-CDS-P-littoralis_Contig748:21080..211961680791542.4471061-CDS-P-littoralis_Contig748:21080..21196Pylaiella littoralis U1_48CDSP-littoralis_Contig748 21081..21196 +
1680791542.4599414-CDS-P-littoralis_Contig748:21571..218551680791542.4599414-CDS-P-littoralis_Contig748:21571..21855Pylaiella littoralis U1_48CDSP-littoralis_Contig748 21572..21855 +
1680791542.487107-CDS-P-littoralis_Contig748:22025..220961680791542.487107-CDS-P-littoralis_Contig748:22025..22096Pylaiella littoralis U1_48CDSP-littoralis_Contig748 22026..22096 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791542.5191653-UTR-P-littoralis_Contig748:22096..221071680791542.5191653-UTR-P-littoralis_Contig748:22096..22107Pylaiella littoralis U1_48UTRP-littoralis_Contig748 22097..22107 +
1680791542.5300593-UTR-P-littoralis_Contig748:22750..231551680791542.5300593-UTR-P-littoralis_Contig748:22750..23155Pylaiella littoralis U1_48UTRP-littoralis_Contig748 22751..23155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig748.8.1prot_P-littoralis_Contig748.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig748 21081..22096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig748.8.1

>prot_P-littoralis_Contig748.8.1 ID=prot_P-littoralis_Contig748.8.1|Name=mRNA_P-littoralis_Contig748.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
LPTINRKSRSIIDRASRERVPGCCLCFVFRSRKESDQFQRNFFSRRRCSR
HRNTSRNTSSGVWAFKGREQKKWFEGSIACQSITQENCSDRRADRNRVDE
PDGTRLQRRASEWQPGLVSAWAPCCPGCRSARQQPLFFVYTSRDSRCETR
SLYATA*
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mRNA from alignment at P-littoralis_Contig748:21081..23155+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig748.8.1 ID=mRNA_P-littoralis_Contig748.8.1|Name=mRNA_P-littoralis_Contig748.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2075bp|location=Sequence derived from alignment at P-littoralis_Contig748:21081..23155+ (Pylaiella littoralis U1_48)
CTGCCCACGATAAACCGAAAGTCGCGCTCTATCATCGACAGGGCATCGCG
CGAAAGGGTTCCTGGTTGTTGTTTATGTTTCGTTTTTCGAAGCAGGAAGG
AATCAGATCAGTTTCAGTTGAGTCCGGATCTGAACGTATCACACATGACC
ATGACCATGACGTCCACAAGATGGGTTTGGTGGCTGATGATGTGCTGGAG
CACAACAGTAGATACCCTCCCCCAAAGACCAAGCCCACCACCGCCCTCAA
TCATACTCGCCCGCATTGCCCGCCGACAAGCTTAAACCACCACCACCACC
ACCACCACCACCACCGCCACGCTCGTCATCGTCATCAGCAGCAGCAGCAG
CATCAGCAGCAGTAGCAACAGCAGCACCGTCATTAACATCTAGACAATAA
GCCAATCCTGATTCGGCACAGACCTCTTATTAAGCCTTGGGCTTTATCAG
GTAGCGGGTGCCAATACGGTAATACTACACTGCCATTGCAGGCGCAACTT
CTTCAGTCGACGCCGCTGTTCCCGCCACAGAAACACCAGCCGCAACACCA
GCAGCGGCGTGTGGGCGTTCAAGGGAAGAGAGCAGAAGAAGTGGTTCGAG
GGCAGTATCGCGTGCCAGTCAATCACTCAGGAGAACTGTAGCGATCGCCG
TGCCGACCGTAATCGCGTGGATGAACCGGATGGGACACGCCTCCAGCGCC
GTGCGAGTGAGTGGCAACCTGGACTAGTCTCCGCTTGGGCGCCATGCTGT
CCGGGATGCCGCAGCGCCCGGCAACGTGAGTTTCGCGTGAGGCGATGTTG
TTGTTGTTGTTTGAGGTCTGGTCTCGATAAGCCTAGGATTTCGTCGGAAT
CACGAAAAATGCCCTCACCACCCTCACCCAAGTCGGACACCCCCCACCTC
CCCCCCCATGCTGCTGACAATATTTGTTTCTGTCTTTTGCTCCAGAACCT
CTTTTTTTTGTCTACACATCGCGCGACTCAAGATGCGAGACCAGATCTTT
GTATGCGACTGCCTAGTCGACCAGCAGGTGAAGGGCGTTCAATAGGTCGC
AAAAGAAACTAAACAAATCTAAAACATGCATCGTATAATCTTGTTGCTGG
CTTTGTGCGATCTCCTAGCCTTGGGCACGTACGGTGCACGTGTGATCACA
CGCCAGCCTTTTTTAATGACATGCGTCAATACTTGGGGTACCGAGCTGAT
GACATTGAGTGGGGCGTGGTATCGTGTGCCACCTGTTTATGAGATAAGCG
ACGGTTGTTTTCGAGTTTCAAAAATACCACTGTCGCACGTGTTTAGTTAA
AAATGTTTCCTGGGTTTTTTGCTGAGGGATGTGCTTCCTTGTAAAGAATA
CGTGCTATCTTATAGAACCTCCGGTAGCTCGCATGAAAAGGTGACACAGG
CCCCGAAAAGTGCAGTTAGCTAGCTTGCTCGGGACGTGATTAAATTACAG
GCATGTAAAAGTTGAAGTTGAATGTTCCTTTCAACATTTTTTCGGCATCC
CCACCGACAGGTCTCCGTCTCTCCGATGACATATCGTTTTTTTTGTGCTC
CCCAGAGATGTGCTCTTGGTTTGCAATTGCCTCCTGTCATTGCTGTCGTG
ACTGTCACGAATAATGGTATCCACATCTTGGCCGACTTCCCACTGTTGTT
TTTGTCTGTCTGTGCGATAGGTAAGCTCCATAAGGCTGGCTTCTGTGGGG
ATGAGGCCAACCGGCATGCCCTCGGAATGCCGCCGATTGGAATACAGCGC
GGGATGATTCCTCATCTTTCCCTGGCTCAGCAGCAGCGCCTAGAGTTTCC
TCATGGAGTCCCTCATGGCGTTCTTGTTTCAAGAGGGACGATGGGGGGCT
TGCGAGGTGGGGCCTTGAGGTCTTAAAATGGTCTGTCATGTCTTGCGTTC
ATCGTGGCTTGAATTGTCACTTCAAGTACTCCGTAGTGCGGGAGAGACGC
AGGACCTCGCTACCGATTTTCGGGACAACGCCTTTTTTGCGAGCGGTTTT
TGTGGTTGAATCTCACGTTAGCTCATCGCTAAAGTCTGGTTTAAAAACCA
GAGGCGCACATCTTGCAAGGAGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig748:21081..23155+

>mRNA_P-littoralis_Contig748.8.1 ID=mRNA_P-littoralis_Contig748.8.1|Name=mRNA_P-littoralis_Contig748.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig748:21081..23155+ (Pylaiella littoralis U1_48)
CTGCCCACGATAAACCGAAAGTCGCGCTCTATCATCGACAGGGCATCGCG
CGAAAGGGTTCCTGGTTGTTGTTTATGTTTCGTTTTTCGAAGCAGGAAGG
AATCAGATCAGTTTCAGCGCAACTTCTTCAGTCGACGCCGCTGTTCCCGC
CACAGAAACACCAGCCGCAACACCAGCAGCGGCGTGTGGGCGTTCAAGGG
AAGAGAGCAGAAGAAGTGGTTCGAGGGCAGTATCGCGTGCCAGTCAATCA
CTCAGGAGAACTGTAGCGATCGCCGTGCCGACCGTAATCGCGTGGATGAA
CCGGATGGGACACGCCTCCAGCGCCGTGCGAGTGAGTGGCAACCTGGACT
AGTCTCCGCTTGGGCGCCATGCTGTCCGGGATGCCGCAGCGCCCGGCAAC
AACCTCTTTTTTTTGTCTACACATCGCGCGACTCAAGATGCGAGACCAGA
TCTTTGTATGCGACTGCCTAG
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