mRNA_P-littoralis_Contig743.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig743.17.1
Unique NamemRNA_P-littoralis_Contig743.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig743.17.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.090e-34
Identity = 76/139 (54.68%), Postives = 96/139 (69.06%), Query Frame = 3 
Query:    6 ENGVKETFKVLNPNGSARDTTRKKVQLPTFSSGIEKKKIVTRAAGVSARHIGDLKKTIGVLSKTRGKGGIPMVGDMPQCLGDS-GGLHGISKSKAVAIVDKFGQGATAKLLPKQMPVPHTCAIDTATIVHQVSPQSYGA 419
            ENGVK  +  LNP+ S RD  RK+V+LPTFSS  E +K  TR +  +ARHIGDLK+ +  LSK+R  GG P+V   P  +GDS GG+ G SKSKA+ IV+KF + A +K  P  +PVPHTCA+D ATIVH V P +Y A
Sbjct:  145 ENGVKGEYVQLNPDRSDRDAPRKQVRLPTFSSAPEGRKSNTRVSSKAARHIGDLKQYVAALSKSR-TGGTPIVAGPPPQMGDSKGGMQGFSKSKAIDIVNKFAEDAISKPPPADIPVPHTCAVDMATIVHSVPPLAYVA 282
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BLAST of mRNA_P-littoralis_Contig743.17.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.170e-34
Identity = 76/139 (54.68%), Postives = 96/139 (69.06%), Query Frame = 3 
Query:    6 ENGVKETFKVLNPNGSARDTTRKKVQLPTFSSGIEKKKIVTRAAGVSARHIGDLKKTIGVLSKTRGKGGIPMVGDMPQCLGDS-GGLHGISKSKAVAIVDKFGQGATAKLLPKQMPVPHTCAIDTATIVHQVSPQSYGA 419
            ENGVK  +  LNP+ S RD  RK+V+LPTFSS  E +K  TR +  +ARHIGDLK+ +  LSK+R  GG P+V   P  +GDS GG+ G SKSKA+ IV+KF + A +K  P  +PVPHTCA+D ATIVH V P +Y A
Sbjct:  639 ENGVKGEYVQLNPDRSDRDAPRKQVRLPTFSSAPEGRKSNTRVSSKAARHIGDLKQYVAALSKSR-TGGTPIVAGPPPQMGDSKGGMQGFSKSKAIDIVNKFAEDAISKPPPADIPVPHTCAVDMATIVHSVPPLAYVA 776
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BLAST of mRNA_P-littoralis_Contig743.17.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.600e-10
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:   12 GVKETFKV-LNPNGSARDTTRKKVQLPTFSSGIEKKKIVTRAAGVSARHIGDLKKTIGVLSK 194
            G  ETF+  L P G A+D TRK+V+L TFS+G EKKK  TRA G +A HI DL+K IG L+K
Sbjct:  646 GALETFEEELGPGGQAKDATRKRVKLATFSTGTEKKKTKTRAQGAAATHIEDLQKAIGALAK 707
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JBA3_9PHAE2.090e-3454.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE2.170e-3454.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRV8_9PHAE2.600e-1058.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig743contigP-littoralis_Contig743:33130..33557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size430
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.599456-CDS-P-littoralis_Contig743:33129..333391680791538.599456-CDS-P-littoralis_Contig743:33129..33339Pylaiella littoralis U1_48CDSP-littoralis_Contig743 33130..33339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.6132886-UTR-P-littoralis_Contig743:33339..335571680791538.6132886-UTR-P-littoralis_Contig743:33339..33557Pylaiella littoralis U1_48UTRP-littoralis_Contig743 33340..33557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig743.17.1prot_P-littoralis_Contig743.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig743 33130..33339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig743.17.1

>prot_P-littoralis_Contig743.17.1 ID=prot_P-littoralis_Contig743.17.1|Name=mRNA_P-littoralis_Contig743.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
MVGDMPQCLGDSGGLHGISKSKAVAIVDKFGQGATAKLLPKQMPVPHTCA
IDTATIVHQVSPQSYGARSK
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mRNA from alignment at P-littoralis_Contig743:33130..33557-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig743.17.1 ID=mRNA_P-littoralis_Contig743.17.1|Name=mRNA_P-littoralis_Contig743.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=428bp|location=Sequence derived from alignment at P-littoralis_Contig743:33130..33557- (Pylaiella littoralis U1_48)
TGTAGGAGAACGGCGTAAAGGAAACTTTTAAAGTGCTAAACCCCAACGGA
TCGGCGCGGGACACGACAAGGAAAAAAGTTCAGCTGCCTACGTTCTCTTC
TGGAATAGAAAAGAAGAAAATAGTGACGCGGGCTGCAGGAGTAAGTGCCA
GGCACATTGGAGATCTCAAGAAGACGATAGGGGTGCTTTCGAAGACCAGG
GGCAAAGGTGGAATCCCCATGGTGGGTGATATGCCCCAATGCCTTGGCGA
TTCGGGGGGCTTGCACGGTATTTCAAAATCCAAAGCCGTTGCCATCGTCG
ACAAATTCGGTCAAGGCGCAACCGCAAAACTTTTGCCCAAGCAGATGCCT
GTACCACACACGTGCGCGATTGACACGGCCACAATCGTCCACCAAGTATC
TCCGCAGTCTTACGGCGCAAGATCGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig743:33130..33557-

>mRNA_P-littoralis_Contig743.17.1 ID=mRNA_P-littoralis_Contig743.17.1|Name=mRNA_P-littoralis_Contig743.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig743:33130..33557- (Pylaiella littoralis U1_48)
ATGGTGGGTGATATGCCCCAATGCCTTGGCGATTCGGGGGGCTTGCACGG
TATTTCAAAATCCAAAGCCGTTGCCATCGTCGACAAATTCGGTCAAGGCG
CAACCGCAAAACTTTTGCCCAAGCAGATGCCTGTACCACACACGTGCGCG
ATTGACACGGCCACAATCGTCCACCAAGTATCTCCGCAGTCTTACGGCGC
AAGATCGAAG
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