mRNA_P-littoralis_Contig741.28.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 9.270e-15 Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query: 221 LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDYKDRYWRVRYTDNNWEEVTRTELKRLLR 400
LSR AL ++PIG QK+ G+ L GQV+DY YWRVRYTD NWEE++R EL+RL R
Sbjct: 1822 LSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLAR 1881
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 4.920e-13 Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 1 DCRRKCLPTGRMSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHP 171
DCRR T ++ WEY+G+ +G DWLSED +L+ SFTPLQLDGF+ALWHLYHP
Sbjct: 746 DCRRSRSRT-QVVWEYRGKLGSGAVSDWLSEDVMLR--SFTPLQLDGFVALWHLYHP 799
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 2.370e-12 Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 2
Query: 221 LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDYKDRYWRVRYTDNNWEEVTRTELKRLL 397
L R ++Q+ G QKDFG G L GQVF ++DRYWRVRY++ NWEE+TR EL+R L
Sbjct: 1068 LQRGLSVQVKMQGFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQELERCL 1126
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A836CCZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ7_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.870e-7 Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 2
Query: 179 PSEEANHDPRAAIALSRKAALQLYPIGTHVQKDF----GSGLT-LNGQVFDYKDRYWRVRYTDNNWEEVTRTELKRLLR 400
P + P+ + R++ALQLYPIGT + ++ G +T + G V ++ YWR+RY D WE++TRT++K ++
Sbjct: 59 PRQRDRPTPKEDAGMRRESALQLYPIGTALVREHRTVVGGPITYVWGAVKNFVSPYWRIRYEDGEWEQMTRTQVKSAIQ 137
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 7.800e-7 Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 2
Query: 224 SRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDYKDRYWRVRYTDNNWEEVTRTELKR 391
SR+ ALQL+P+GT V ++F G FD D YWRV Y D +WEE+T++E+ +
Sbjct: 1875 SREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEELTKSEMDK 1934
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 1.450e-6 Identity = 24/60 (40.00%), Postives = 43/60 (71.67%), Query Frame = 2
Query: 224 SRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDYKDRYWRVRYTDNNWEEVTRTELKR 391
+R+AAL+ +P+ T V ++ G+ + G+V D+ D YWRV+++D++WEE+TR EL++
Sbjct: 2172 TREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRRELRQ 2231
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 9.140e-6 Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 2
Query: 224 SRKAALQLYPIGTHVQK---DFGSGLTLN-GQVFDYKDRYWRVRYTDNNWEEVTRTELK 388
+R+AALQ +P+ T V K D + L+ G+V D+ D YWRV ++D +WEE TR EL+
Sbjct: 1627 TREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEEFTRRELR 1685 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig741.28.1 >prot_P-littoralis_Contig741.28.1 ID=prot_P-littoralis_Contig741.28.1|Name=mRNA_P-littoralis_Contig741.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp MSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITLback to top mRNA from alignment at P-littoralis_Contig741:103974..104395+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig741.28.1 ID=mRNA_P-littoralis_Contig741.28.1|Name=mRNA_P-littoralis_Contig741.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=422bp|location=Sequence derived from alignment at P-littoralis_Contig741:103974..104395+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig741:103974..104395+ >mRNA_P-littoralis_Contig741.28.1 ID=mRNA_P-littoralis_Contig741.28.1|Name=mRNA_P-littoralis_Contig741.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig741:103974..104395+ (Pylaiella littoralis U1_48)back to top |