mRNA_P-littoralis_Contig741.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig741.20.1
Unique NamemRNA_P-littoralis_Contig741.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 5.080e-35
Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRNS 336
            MRGTFTF +Q++Y +  +LP C TD+ GSF CA+VG KP++ QLR+ FGARR +V  LL F LD+DN L+ +H+LA+EAQ+S  N D Y +DGSIP+AI DAL+PV D  N+
Sbjct:  174 MRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGAKPSVGQLRKLFGARRKMVEDLLAFQLDKDNQLVGVHQLAQEAQLSAENLDTYKDDGSIPKAIFDALLPVNDSTNA 285          
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 5.140e-35
Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRNS 336
            MRGTFTF +Q++Y +  +LP C TD+ GSF CA+VG KP++ QLR+ FGARR +V  LL F LD+DN L+ +H+LA+EAQ+S  N D Y +DGSIP+AI DAL+PV D  N+
Sbjct:  254 MRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGAKPSVGQLRKLFGARRKMVEDLLAFQLDKDNQLVGVHQLAQEAQLSAENLDTYKDDGSIPKAIFDALLPVNDSTNA 365          
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.560e-34
Identity = 63/108 (58.33%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTD 324
            MRGTFTF +Q++Y +  +LP C TD+ GSF CA+VG KP L QLRR  GARR +V+ LLDF LD+DN L+  H LAREAQ++  N  GY  DGSIP+A+LDA++P+ D
Sbjct:  370 MRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGCKPNLAQLRRLLGARRQMVQDLLDFQLDKDNRLVGQHTLAREAQLAPENLHGYSNDGSIPKAVLDAILPIKD 477          
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.480e-22
Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRNSV 339
            MRGTFTF +QN YA+G+ LP C TDV G+F CA+ G K   +QLR  FGARRS+                        AQ S+ NP  Y EDG IP+ I DAL+PVT++ N+V
Sbjct:  321 MRGTFTFYMQNLYAVGKHLPACATDVAGAFTCALFGSKQKPEQLRPLFGARRSM------------------------AQTSDENPRTYAEDGFIPKEIQDALVPVTEKNNTV 409          
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5K657_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K657_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 9.790e-14
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRK-PTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRN 333
            MRGT  F   NS ++  +LP   T +       + G+K P    L R  GAR+S++R ++D++LD++  L+    LA+   +SE N D Y E+G+IP+ +LD+++   D  N
Sbjct:    1 MRGTSVFYANNSSSVTTELPLVATGLLDMITVVLAGKKNPKTSDLGRLLGARKSMIRDIIDYMLDKEEKLVVGFPLAKSLPISEENLDSYSENGAIPKVLLDSILTSNDPLN 112          
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5K101_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K101_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.110e-13
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRK-PTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRN 333
            MRGT  F   NS ++  +LP   T +       + G+K P    L R  GAR+S++R ++D++LD++  L+    L +   +SE N D Y E+G+IP+ +LD+++   D  N
Sbjct:  224 MRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIIDYMLDKEEKLVVGFPLGKSLPISEENLDSYSENGAIPKVLLDSILTSNDPLN 335          
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5KP43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP43_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.050e-11
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRK-PTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQ 291
            MRGT  F  +NS ++  +LP   T +       + G+K P    L R  GAR+S++R ++D++LD++  L+    LA+   +SE   D Y E+G+IP+
Sbjct:  142 MRGTSVFYAKNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIIDYMLDKEEKLVVGFPLAKSLPISEEKLDSYSENGAIPR 239          
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.830e-10
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRK-PTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRNS 336
            MRGT  F   NS ++  +LP   T +       + G+K P    L R  GAR+S++R ++D++LD +  L+     A+   +SE N D Y E+G+IP+ +   ++   +RR+S
Sbjct:  206 MRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIIDYMLDNEEKLVVGFPRAKSLPISEENIDSYSENGAIPKVLWIQIL--LNRRDS 316          
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5J5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.820e-6
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 1
Query:  241 VSEANPDGYPEDGSIPQAILDALIPVTDRRNSV 339
            VSEAN  GYPEDGS PQAI DALI VTDRRN+V
Sbjct:  216 VSEANLQGYPEDGSTPQAIQDALISVTDRRNTV 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K8N9_9PHAE5.080e-3557.14Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5L0L4_9PHAE5.140e-3557.14Helitron_like_N domain-containing protein n=1 Tax=... [more]
D7G3U9_ECTSI4.560e-3458.33ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5JN07_9PHAE2.480e-2246.90ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K657_9PHAE9.790e-1434.82Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K101_9PHAE1.110e-1333.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP43_9PHAE7.050e-1134.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE1.830e-1032.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5A5_9PHAE2.820e-681.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig741contigP-littoralis_Contig741:73383..73721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK0
PFAMsHelitron_like_N,PIF1
Model size341
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.57e-35
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size339
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.2597852-CDS-P-littoralis_Contig741:73382..737211680791536.2597852-CDS-P-littoralis_Contig741:73382..73721Pylaiella littoralis U1_48CDSP-littoralis_Contig741 73383..73721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig741.20.1prot_P-littoralis_Contig741.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig741 73383..73721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig741.20.1

>prot_P-littoralis_Contig741.20.1 ID=prot_P-littoralis_Contig741.20.1|Name=mRNA_P-littoralis_Contig741.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGA
RRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAIL
DALIPVTDRRNSV
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mRNA from alignment at P-littoralis_Contig741:73383..73721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig741.20.1 ID=mRNA_P-littoralis_Contig741.20.1|Name=mRNA_P-littoralis_Contig741.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig741:73383..73721+ (Pylaiella littoralis U1_48)
ATGCGGGGAACATTCACTTTCAACCTGCAGAACTCGTACGCCATCGGACG CCAACTTCCGGGATGTGGCACAGATGTGACGGGCTCCTTCGCTTGCGCCA TCGTTGGTAGGAAACCGACACTCCAGCAACTTCGACGTTTCTTTGGGGCG CGAAGATCCGTGGTGCGAGCGCTGTTGGATTTCGTGCTTGACAGGGACAA CACCTTGATCCGGATTCACAAGCTAGCCCGAGAAGCTCAGGTATCAGAAG CCAACCCTGACGGCTACCCTGAGGACGGATCAATTCCGCAAGCTATTCTA GACGCCCTGATCCCCGTCACCGATCGCAGGAACTCTGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig741:73383..73721+

>mRNA_P-littoralis_Contig741.20.1 ID=mRNA_P-littoralis_Contig741.20.1|Name=mRNA_P-littoralis_Contig741.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig741:73383..73721+ (Pylaiella littoralis U1_48)
ATGCGGGGAACATTCACTTTCAACCTGCAGAACTCGTACGCCATCGGACG
CCAACTTCCGGGATGTGGCACAGATGTGACGGGCTCCTTCGCTTGCGCCA
TCGTTGGTAGGAAACCGACACTCCAGCAACTTCGACGTTTCTTTGGGGCG
CGAAGATCCGTGGTGCGAGCGCTGTTGGATTTCGTGCTTGACAGGGACAA
CACCTTGATCCGGATTCACAAGCTAGCCCGAGAAGCTCAGGTATCAGAAG
CCAACCCTGACGGCTACCCTGAGGACGGATCAATTCCGCAAGCTATTCTA
GACGCCCTGATCCCCGTCACCGATCGCAGGAACTCTGTC
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