mRNA_P-littoralis_Contig741.20.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE) HSP 1 Score: 136 bits (343), Expect = 5.080e-35 Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = 1
Query: 1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRNS 336
MRGTFTF +Q++Y + +LP C TD+ GSF CA+VG KP++ QLR+ FGARR +V LL F LD+DN L+ +H+LA+EAQ+S N D Y +DGSIP+AI DAL+PV D N+
Sbjct: 174 MRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGAKPSVGQLRKLFGARRKMVEDLLAFQLDKDNQLVGVHQLAQEAQLSAENLDTYKDDGSIPKAIFDALLPVNDSTNA 285
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE) HSP 1 Score: 136 bits (343), Expect = 5.140e-35 Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = 1
Query: 1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRNS 336
MRGTFTF +Q++Y + +LP C TD+ GSF CA+VG KP++ QLR+ FGARR +V LL F LD+DN L+ +H+LA+EAQ+S N D Y +DGSIP+AI DAL+PV D N+
Sbjct: 254 MRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGAKPSVGQLRKLFGARRKMVEDLLAFQLDKDNQLVGVHQLAQEAQLSAENLDTYKDDGSIPKAIFDALLPVNDSTNA 365
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI) HSP 1 Score: 134 bits (336), Expect = 4.560e-34 Identity = 63/108 (58.33%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTD 324
MRGTFTF +Q++Y + +LP C TD+ GSF CA+VG KP L QLRR GARR +V+ LLDF LD+DN L+ H LAREAQ++ N GY DGSIP+A+LDA++P+ D
Sbjct: 370 MRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGCKPNLAQLRRLLGARRQMVQDLLDFQLDKDNRLVGQHTLAREAQLAPENLHGYSNDGSIPKAVLDAILPIKD 477
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.480e-22 Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRNSV 339
MRGTFTF +QN YA+G+ LP C TDV G+F CA+ G K +QLR FGARRS+ AQ S+ NP Y EDG IP+ I DAL+PVT++ N+V
Sbjct: 321 MRGTFTFYMQNLYAVGKHLPACATDVAGAFTCALFGSKQKPEQLRPLFGARRSM------------------------AQTSDENPRTYAEDGFIPKEIQDALVPVTEKNNTV 409
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5K657_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K657_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 9.790e-14 Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 1
Query: 1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRK-PTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRN 333
MRGT F NS ++ +LP T + + G+K P L R GAR+S++R ++D++LD++ L+ LA+ +SE N D Y E+G+IP+ +LD+++ D N
Sbjct: 1 MRGTSVFYANNSSSVTTELPLVATGLLDMITVVLAGKKNPKTSDLGRLLGARKSMIRDIIDYMLDKEEKLVVGFPLAKSLPISEENLDSYSENGAIPKVLLDSILTSNDPLN 112
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5K101_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K101_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.110e-13 Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRK-PTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRN 333
MRGT F NS ++ +LP T + + G+K P L R GAR+S++R ++D++LD++ L+ L + +SE N D Y E+G+IP+ +LD+++ D N
Sbjct: 224 MRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIIDYMLDKEEKLVVGFPLGKSLPISEENLDSYSENGAIPKVLLDSILTSNDPLN 335
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5KP43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP43_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 7.050e-11 Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRK-PTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQ 291
MRGT F +NS ++ +LP T + + G+K P L R GAR+S++R ++D++LD++ L+ LA+ +SE D Y E+G+IP+
Sbjct: 142 MRGTSVFYAKNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIIDYMLDKEEKLVVGFPLAKSLPISEEKLDSYSENGAIPR 239
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.830e-10 Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1
Query: 1 MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRK-PTLQQLRRFFGARRSVVRALLDFVLDRDNTLIRIHKLAREAQVSEANPDGYPEDGSIPQAILDALIPVTDRRNS 336
MRGT F NS ++ +LP T + + G+K P L R GAR+S++R ++D++LD + L+ A+ +SE N D Y E+G+IP+ + ++ +RR+S
Sbjct: 206 MRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIIDYMLDNEEKLVVGFPRAKSLPISEENIDSYSENGAIPKVLWIQIL--LNRRDS 316
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Match: A0A6H5J5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A5_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 2.820e-6 Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 1
Query: 241 VSEANPDGYPEDGSIPQAILDALIPVTDRRNSV 339
VSEAN GYPEDGS PQAI DALI VTDRRN+V
Sbjct: 216 VSEANLQGYPEDGSTPQAIQDALISVTDRRNTV 248 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig741.20.1 >prot_P-littoralis_Contig741.20.1 ID=prot_P-littoralis_Contig741.20.1|Name=mRNA_P-littoralis_Contig741.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp MRGTFTFNLQNSYAIGRQLPGCGTDVTGSFACAIVGRKPTLQQLRRFFGAback to top mRNA from alignment at P-littoralis_Contig741:73383..73721+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig741.20.1 ID=mRNA_P-littoralis_Contig741.20.1|Name=mRNA_P-littoralis_Contig741.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig741:73383..73721+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig741:73383..73721+ >mRNA_P-littoralis_Contig741.20.1 ID=mRNA_P-littoralis_Contig741.20.1|Name=mRNA_P-littoralis_Contig741.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig741:73383..73721+ (Pylaiella littoralis U1_48)back to top |