mRNA_P-littoralis_Contig74.57.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.57.1
Unique NamemRNA_P-littoralis_Contig74.57.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig74.57.1 vs. uniprot
Match: A0A6H5LDS9_9PHAE (Lipase_3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS9_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 7.990e-129
Identity = 191/244 (78.28%), Postives = 213/244 (87.30%), Query Frame = 3 
Query:   78 AAGNLEFKKRISRELCWAVKEPTLQKLEAHASQHGLKLEQAWKAPSGEGFKAAAARMMVQGEDVLIVAFRATFGNDEWLEYPQRYWKRRFIAHDGAPPGTDLKVFGVWSLTLDEIWKIPGEKPGGPRDSLRGLIWRQLNAGNRVWLAGHSKGGAVATTAASRLLLGDSSVGDKEEMADPAVRRPEPDMLFVRGGALSRLSVFTYNAPMAFSAPLAELYDKRIAEVGGREMGTAVGFHHFRGGGG 809
            AA +LE+KK ISRELCWAVKEPTL+ LE+HA++HGL + QAW+AP GEGFKAAAAR  V  EDVLIVAFRAT GN+EWLEYPQ+Y+K+R I HDG  PGT+LKVFGVWSLTLDE+WK+PG+KP GP+D+LRGLIWRQLNAGNRVWL GHSKGGAVATTAASRLLLGDSSVG KEE ADPAVRRPEPDML +RGG LSRLSVFTYNAPMAFS PLA+LYD R+AE+G RE G A   H  RGGGG
Sbjct:    5 AADDLEYKKMISRELCWAVKEPTLEGLESHAAKHGLTIVQAWRAPRGEGFKAAAARFFVDAEDVLIVAFRATIGNEEWLEYPQKYFKQRLIPHDGEAPGTNLKVFGVWSLTLDEVWKVPGDKPDGPKDNLRGLIWRQLNAGNRVWLTGHSKGGAVATTAASRLLLGDSSVGGKEEAADPAVRRPEPDMLSLRGGPLSRLSVFTYNAPMAFSIPLADLYDARMAEIGRREGGAARRLH-LRGGGG 247
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BLAST of mRNA_P-littoralis_Contig74.57.1 vs. uniprot
Match: D7FQZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ6_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 3.860e-113
Identity = 175/238 (73.53%), Postives = 197/238 (82.77%), Query Frame = 3 
Query:   78 AAGNLEFKKRISRELCWAVKEPTLQKLEAHASQHGLKLEQAWKAPSGEGFKAAAARMMVQGEDVLIVAFRATFGNDEWLEYPQRYWKRRFIAHDGAPPGTDLKVFGVWSLTLDEIWKIPGEKPGGPRDSLRGLIWRQLNAGNRVWLAGHSKGGAVATTAASRLLLGDSSVGDKEEMADPAVRRPEPDMLFVRGGALSRLSVFTYNAPMAFSAPLAELYDKRIAEVG--GREMGTAVGF 785
            AA +LE+KK ISRELCWAVKE TL+ LE+HA++HGL + QAW+AP GEGFKAAAAR +V   DVLIVAFRAT GNDEWLEYPQ+Y+K+R I HDG  PGT+LKVFGVWSLTLDE+WK+PG+KP GP+D+LRGLIWRQLNAGNRVWL GHSKGGAVATTAASRLLLGDSSVG KEE ADPAVRRPEPDML +RGG LSRLSVFTYNAPMAF   L     ++       GRE G  + F
Sbjct:    5 AADDLEYKKAISRELCWAVKETTLEGLESHAAKHGLTIVQAWRAPRGEGFKAAAARFVVDAADVLIVAFRATIGNDEWLEYPQKYFKQRLIPHDGEAPGTNLKVFGVWSLTLDEVWKVPGDKPDGPKDNLRGLIWRQLNAGNRVWLTGHSKGGAVATTAASRLLLGDSSVGGKEEAADPAVRRPEPDMLSLRGGPLSRLSVFTYNAPMAFFHTLGRSLRRQDGRNRRPGRERGKEIAF 242
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDS9_9PHAE7.990e-12978.28Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
D7FQZ6_ECTSI3.860e-11373.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:258703..263914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2669
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-09_003150.1
Cds size978
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791530.0301151-UTR-P-littoralis_Contig74:258702..2587641680791530.0301151-UTR-P-littoralis_Contig74:258702..258764Pylaiella littoralis U1_48UTRP-littoralis_Contig74 258703..258764 +
1680791530.098297-UTR-P-littoralis_Contig74:262285..2639141680791530.098297-UTR-P-littoralis_Contig74:262285..263914Pylaiella littoralis U1_48UTRP-littoralis_Contig74 262286..263914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791530.0600069-CDS-P-littoralis_Contig74:258764..2591211680791530.0600069-CDS-P-littoralis_Contig74:258764..259121Pylaiella littoralis U1_48CDSP-littoralis_Contig74 258765..259121 +
1680791530.0749211-CDS-P-littoralis_Contig74:261007..2611721680791530.0749211-CDS-P-littoralis_Contig74:261007..261172Pylaiella littoralis U1_48CDSP-littoralis_Contig74 261008..261172 +
1680791530.0874207-CDS-P-littoralis_Contig74:261829..2622851680791530.0874207-CDS-P-littoralis_Contig74:261829..262285Pylaiella littoralis U1_48CDSP-littoralis_Contig74 261830..262285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.57.1prot_P-littoralis_Contig74.57.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 258765..262285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.57.1

>prot_P-littoralis_Contig74.57.1 ID=prot_P-littoralis_Contig74.57.1|Name=mRNA_P-littoralis_Contig74.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=326bp
MAEAAAAGNLEFKKRISRELCWAVKEPTLQKLEAHASQHGLKLEQAWKAP
SGEGFKAAAARMMVQGEDVLIVAFRATFGNDEWLEYPQRYWKRRFIAHDG
APPGTDLKVFGVWSLTLDEIWKIPGEKPGGPRDSLRGLIWRQLNAGNRVW
LAGHSKGGAVATTAASRLLLGDSSVGDKEEMADPAVRRPEPDMLFVRGGA
LSRLSVFTYNAPMAFSAPLAELYDKRIAEVGGREMGTAVGFHHFRGGGGQ
HDEGDEEHDQHVRFEHRADRVRKLPPGMAMRHVGERRLEGSGIVEDSGVL
LGTAIAVGGVVAAMIAAASKVANSH*
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mRNA from alignment at P-littoralis_Contig74:258703..263914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.57.1 ID=mRNA_P-littoralis_Contig74.57.1|Name=mRNA_P-littoralis_Contig74.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5212bp|location=Sequence derived from alignment at P-littoralis_Contig74:258703..263914+ (Pylaiella littoralis U1_48)
CACACACAGCGGGCTCGTGCAGATCGCAAGTGAGGCAGACACACAACACC
GTTAGAGGGCCCATGGCAGAAGCAGCAGCTGCTGGTAACTTGGAGTTCAA
GAAGAGAATCAGCAGGGAGCTCTGCTGGGCTGTGAAAGAGCCCACGCTGC
AAAAACTCGAGGCACATGCCTCCCAACACGGACTGAAGCTCGAACAGGCC
TGGAAAGCGCCTTCAGGGGAGGGGTTCAAGGCCGCAGCGGCGAGGATGAT
GGTGCAAGGCGAGGACGTTCTCATCGTGGCCTTCCGAGCTACTTTCGGTA
ACGACGAGTGGCTCGAGTATCCGCAAAGGTACTGGAAGAGGAGGTTCATT
GCCCACGACGGCGCGCCGCCTGGCACGGACCTGAAGGTGTTCGGGGTCTG
GAGCTTGACTTTAGACGAGGTGGGTGTTTGCGTGACATCATACAGGCAGG
CATCATCGATACCGCAGGTATATACTCCGCACAATGTAATACTGACTCCT
TTCGGACAGCATCATACCAATGTAGGACACTTCGATTTAGCATTGATGGC
TTCGAGGATGTCTTTTTTGCAGCGAGCTCCTTGCAGCCAAGCTGCCGCTG
AAATCTTCAGCTGCTGTGTAGCAGCGCCTCTCTCTCTCTCCCTCTCCATC
TCTTGTCTAATCAAACTGCTCCACCGCGTGAAGTGTTTCACGTTCACCTT
CATAATTTATCGCTCTTTCTCTCTCTTCGTCCAACTTATCCCACAGCAGG
CAGTATAGTAGGTTCCCTTCTGCCCATTTACTCTCCCATGTGGGGAGTTC
CAAATTGGAACACAGCAGTGGCAAGCCGGGAAAGAAATCCATGATTGAAT
GCAACGTACAAGGCACAGAAGTTTTATGTACCAGTATGGAATGGTGTCAC
ATGTCTGATATCTCTTGGCTGCAGTGATTGCTTGTCGATCTTCGTCCACA
TGATAGGTACAACTTGAACGAAGGCGGTGTGGATCCCAGCCTGTTCATAT
CATAGCTGAATCTGTCCAAGGAAATTTTCTAGTGCCGTTGAACGTTCCTC
GCGTTCTCCATTACTGCTGTAGCGGTCTCAGATTTCGTTTTGTCTCATCA
GTTTTCAGGTCGAAGCATTCCTCACACTGCTGTAATGCATGTAGTTTGAT
CGTCTGTCACACCACAAACCAACGGTAGACGAGAACTTTCTGCGAGGTTT
CTCCTGCACATTGCGACCTTTCTCTTATCCATGACCAAGATGCGTGATGT
GACATGACACATGATGTGATGCTGGCTGTCCTCGCAAACATGTCTACGCC
TGTCCATCTGACTTTTCCTTCCTATCTGTATTTCCCTAGACCTGTAACTC
AACGGTCGTTGCAGCTCAGTGATCCGAGTAGTCTTACGTGCGTGTTGTTG
TTGTTGAATAGTCTTACGTGCGTGTGGGTGTGTGTGTTTGTTTTCGTCCC
ATTTATTCTGGGCAACAGTCTACACCTTTCGGTATGAAATGGGTGCACCA
GCCGGGGTCACACAGAAGCTTTTTATTGCCCTCCACCCACCTTGCGCGGT
GCTTGTCTTTTTTGCCTGTCAGCTTTGTATTGCGAGAAGGGTTCAACCGT
CCCTTACCCCCGTCTGCTGTTTAGTCGAATGTGTGTATACTCGCGACATA
CGCAAGTCGCGCTCTAGTCTTAAATTGATTAATTTCATATCTATTTTCTA
CCAGTATTTTCGAAAGGATCATTCGTGGTGTTTCTTTATTTGGAATGATG
GGAAAACTATACCGAAGTATTTGAATATGGTTGTCGTACCGGACACCTGA
TCGCAGCGTATTTTGTTCAATATGAAGCCACACTTTTTTCTAATGCTTCA
GGGCTGTCAAGCCGTGATGGACGTAATGATTTTTTTGGGCGTTGTTGTTC
AATGTATGAAATAGTGTTTCAGACGCGAAGTCTAGTTACAGTCACACCTA
ATGCTTCAGGGCTGTCAAGCCGTACAGCATGCTGCTACATACAAGTCTTC
CAAATGAAGCCACTATACTTGTGTGCAATAAACGCGTCGAAATCACACCC
TTCACTGATGCTGCAAAAGTTGTTGCAAGTAACATGTTTACTTCATAAAT
CCATTCAGTTCAAAACACTTGAAAAAACGATACATGCGTGCACACTACGC
TATGCTTTCATGCCACTAGCTGTTCCGACTGAGGGAAGCCCGAACGGCGG
TGGATATATTTCCACTGCCAGAGTGACTTCGTAAATTCGTGCGGCTCTCA
CCACCTTAATCACTGCTGTTGCCAACCCCCAATGTGCCGAAAAATGAATC
CACAGATTTGGAAGATTCCCGGCGAGAAGCCGGGTGGGCCCAGAGACAGC
CTTCGCGGCCTCATCTGGCGGCAGCTTAACGCAGGCAACAGGGTGTGGCT
CGCGGGGCACAGCAAGGGCGGGGCCGTCGCTACAACCGCCGCCTCGCGCC
TACTTTTGGGCGACTCGTCGGTACGTAAAGGTGGACACACGTGGCACCAC
ACGTAGCTGGCACTACATTCGCAACGACACCAGCAGCAGTGTGATACTGC
TGCCTGTGTGTTGTAACGACCGACCGCAGCGGAAGTGATGTTGCGAAGCT
TCTTGAAGCAACGATACCTCCCAAATGGCGTTGGTGAACCCGGCGTCTCG
GAAACGAGCTCACACTCGTAGATGCACACCTGCCAGTTCCTCACACCGGA
CGACACGCGTTTCATTTTTAGCAAATTGACGGACCCATGCGCAGATTGTG
CGCGATGTGTTGGTGGATTGCGGTGGCCAGCACCATCGCATGTAAACGAT
GGTTGATCGCGCTCTTTTGATTTGTGCTTGTTCGTTATTTCTGCACATAC
CAAAGTGGTGCAACGAAAACGGTCGATTTCTACGTGCGTTTTATCGAAAG
GGATGCGTAGTCCAACGGCCAAGCCACTCCAGTTTGTGAGACGAAATAAC
ACTCGGAGACAGGAATTCAGGGAGCGTGTTGGTATTTTGTCCTTGCGGTG
AAATTTCTGCCTTTCAACCGTAACTTAACACACAAATCAAAAGAATAACA
ATACTTAGCACTTGTGTACTTCCATCCGGTCTGGTCTGTCCTCTCTACGT
GTATATGTCATCATACATCACCATCAGGTCGGCGACAAGGAAGAGATGGC
CGACCCTGCCGTTCGCCGGCCAGAGCCGGACATGCTCTTCGTGCGAGGGG
GAGCGCTGTCTCGGCTCTCCGTCTTCACGTACAACGCCCCGATGGCGTTT
TCCGCCCCGTTGGCGGAGTTGTACGACAAAAGGATAGCCGAGGTTGGGGG
CCGGGAAATGGGGACAGCAGTAGGGTTTCACCACTTTAGAGGTGGGGGAG
GGCAGCACGACGAGGGAGACGAGGAGCACGACCAGCATGTGCGGTTTGAG
CACAGAGCGGATCGGGTTAGAAAACTCCCGCCCGGGATGGCCATGAGACA
CGTGGGCGAGAGGAGGTTGGAAGGGTCGGGGATAGTCGAGGACTCGGGGG
TGCTTTTGGGGACAGCGATTGCCGTCGGCGGAGTGGTGGCTGCGATGATC
GCTGCGGCCTCGAAGGTTGCGAACAGCCATTGATCTGATTCCTGTGGCTT
CAGATTGATTAGTGGTATTCGCTCTTTGCCCTTATGATTACTTTTGGTTT
TCCAGGTTTCTCGGTTGTAAGATTGTCAAACACACGGTTGGTGAAGTGCT
GCTTGGATTGTGTGGGTGTGTGTGTGTTTTTTTCTGATGCTTCAGGGCTG
TCAAGCCGTGATGGATGTAATGATTTTCTTGGCCATCGTTAATTCAATGT
ATGAAATAGTGTGCTCCAGACGCGTAGTCTGATGAGTTTATTCGAACGGC
TCATGTATCGTATAGGGTTTGTTCTTCGGGGGGGGTTACTCGTGTGCACA
TACAATTATTGTATGCTTCGCATTTTTTTTCTTGCTCTGTGCAGTCAACG
ACTTGAGCGAAGATTTTTTCGGCTTTGCTTGCCTTTGTCCCCAAGATAAT
TTCATTCGCGCTGTGAGAAAGGATGCTTCTTTGGGTGAAACCGGCCTCTG
TTTTGTATATTATTGGATTATGTGGAGAAATGACTGTTTGGCGTACTGCC
ATGAAAAACCTGTTTTGGGGGAACTCAAGCGGGCTGTAGGCTCGACGAGT
TGGGGGGAAATGCTTGAAAAATATAAATTGGAAGGGCGTCGATATCACCC
CCCCCCCCCCTTCTTTCGTACACAAGTTAAGCGCTCCCGGTATCCGTCTT
CCCGGCGACGGAGACCAAAATAACGTCATAAAGAAAATATGTTCAGAGTA
AGTCTGGTTGCCTGCCTTTTGTAGCTTGGCCAATTGTCCCAGCAACACGC
CACCGATCATTCCGGGCATGTGGAGAAAAATACGCATCTGACCTCATGTC
GAGAAAGAGCTTTCCTAGAAGCGCGTTTGTAGCGCAGCAAACCCTTGGAA
TTGACAGTGAACCTCCTGCCGTGTGTGAGAGCGCATGGCATGTGAATGTA
TGTGTACATCATATGTATCTGAGTTTTTCTGTTTCTTCCTGGTGTTCGCG
TGGATCCCGGCTCTGCGATCCAGCACGCCTACTTGTGTTTGTCTGTCTTA
TCTATCCGTAGATACCCCCCGGCCACGAGGAACGTTCCTCGCATTCTCTT
CAACTGCTGCACTCTGTAGTCTGGATTTTCGTTTTCGGGATGCTTTCTCC
AAGTCCGTGGTGTAGGTTTCTGTGAGGTGGAAATTGTGTTTGGGTGGTTC
GCCAGCCGAGGGGGGTGCGGGGTAGAGTTATCTCGCGCCTGTGTGTGGGT
CGGATAGCGAACGAGGAAACGAAAAAAGTTGACTAGAGCAATCTTGACTC
CAAACAAAAGTGCAATTGCAAAAGTGTTACGAATAGTTGAAAAAACTCGT
TCGCTGGAAAGCTCCCGAAGGCGCTCATCTTTTTGTTTTACCGTTTGTTA
ATTGGCCTATTCGGCGTGTCGATTGGCTGGTTGCCCCCCCCGCGGGTCAG
ACAAAATACCGTCATGGAACCAGCAAGCGAACAACGGTCGGATATAGAAC
GGACTGCTTGCAAAGTCGCTTGGCCTCCTACATCAGCAAGTTGCGGCAGT
TTTTTTTGCGTTTCTTACGTTTTTTTAACTCTCAGCTAAGAGTGAGCGCG
CTAGCGAAGCCACTGCTGAAGGCACGAACCTGAGATAAGAGCGGAAGACA
ACTTAGGAACTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:258703..263914+

>mRNA_P-littoralis_Contig74.57.1 ID=mRNA_P-littoralis_Contig74.57.1|Name=mRNA_P-littoralis_Contig74.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=978bp|location=Sequence derived from alignment at P-littoralis_Contig74:258703..263914+ (Pylaiella littoralis U1_48)
ATGGCAGAAGCAGCAGCTGCTGGTAACTTGGAGTTCAAGAAGAGAATCAG
CAGGGAGCTCTGCTGGGCTGTGAAAGAGCCCACGCTGCAAAAACTCGAGG
CACATGCCTCCCAACACGGACTGAAGCTCGAACAGGCCTGGAAAGCGCCT
TCAGGGGAGGGGTTCAAGGCCGCAGCGGCGAGGATGATGGTGCAAGGCGA
GGACGTTCTCATCGTGGCCTTCCGAGCTACTTTCGGTAACGACGAGTGGC
TCGAGTATCCGCAAAGGTACTGGAAGAGGAGGTTCATTGCCCACGACGGC
GCGCCGCCTGGCACGGACCTGAAGGTGTTCGGGGTCTGGAGCTTGACTTT
AGACGAGATTTGGAAGATTCCCGGCGAGAAGCCGGGTGGGCCCAGAGACA
GCCTTCGCGGCCTCATCTGGCGGCAGCTTAACGCAGGCAACAGGGTGTGG
CTCGCGGGGCACAGCAAGGGCGGGGCCGTCGCTACAACCGCCGCCTCGCG
CCTACTTTTGGGCGACTCGTCGGTCGGCGACAAGGAAGAGATGGCCGACC
CTGCCGTTCGCCGGCCAGAGCCGGACATGCTCTTCGTGCGAGGGGGAGCG
CTGTCTCGGCTCTCCGTCTTCACGTACAACGCCCCGATGGCGTTTTCCGC
CCCGTTGGCGGAGTTGTACGACAAAAGGATAGCCGAGGTTGGGGGCCGGG
AAATGGGGACAGCAGTAGGGTTTCACCACTTTAGAGGTGGGGGAGGGCAG
CACGACGAGGGAGACGAGGAGCACGACCAGCATGTGCGGTTTGAGCACAG
AGCGGATCGGGTTAGAAAACTCCCGCCCGGGATGGCCATGAGACACGTGG
GCGAGAGGAGGTTGGAAGGGTCGGGGATAGTCGAGGACTCGGGGGTGCTT
TTGGGGACAGCGATTGCCGTCGGCGGAGTGGTGGCTGCGATGATCGCTGC
GGCCTCGAAGGTTGCGAACAGCCATTGA
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