mRNA_P-littoralis_Contig74.35.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.35.7
Unique NamemRNA_P-littoralis_Contig74.35.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: A0A6H5L1E0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E0_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 4.410e-127
Identity = 251/364 (68.96%), Postives = 276/364 (75.82%), Query Frame = 1 
Query:  274 RKDEIARRKRLGLPLDGLID-KAMLQGAGGGTGGAAAGKSSAPPRQPAMGGQSRAGIGTAGAKAQNTSVYLTGLPPDVTQARIELVFSQYGNVKRTKVYRDDANRAKGDGLVTYAKPASVDLAIAKLNGHEISVGHPISVSMADFNRTKSGAVEGAPPLPPXXXXXXXXXXXXXXXXADYGSXXXXXXXLGASDGALPPLPAECGAEKHPVVVLRSVYTKEESDADPHFFDDLEADMLMECVKFGTVISVATPELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEALVTGKEVLEKEEDK--------ATSANSQQQQINGTGGDKTDGEED-MGPLLQGVPDSPDHPPTDLNSFLESV 1335
            RKDEIARRKRLGLPLDGLID K +L                          QSRAGIGTAGAKAQNTSVY+TGLP D+TQA+IELVFSQ+G+VKR+KVYR++A  AKGDGLVT+AKPASVDLA++K+NGHEISVG+PI+VSMADFNRTKSG          XXXXXXXXXXXXXXXX     XXXXXXX    DGALPPLP ECGA+KHPVVVLRSVYT+EES+ADPHFFDDLEADMLMECVKFGTVISVATPE PGYFG VV+TF TS GAN CAEAMHGRWFDQRQIEALVTGKEVL KE ++                  +    G+K + +E  MGPLLQG PDSP  PP DLNSFLESV
Sbjct:  304 RKDEIARRKRLGLPLDGLIDAKKLLAXXXXXXXXXXXXXXXXXXXXXXXXXQSRAGIGTAGAKAQNTSVYITGLPSDITQAKIELVFSQHGSVKRSKVYRNEAGEAKGDGLVTFAKPASVDLAVSKMNGHEISVGYPITVSMADFNRTKSGTATEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFRTSNGANACAEAMHGRWFDQRQIEALVTGKEVLSKEGEENGXXXXXXXXXXXXXXGDVREATGEKEENDETAMGPLLQGPPDSP--PPADLNSFLESV 665
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: D7FR18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR18_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 1.440e-62
Identity = 121/174 (69.54%), Postives = 127/174 (72.99%), Query Frame = 1 
Query:  850 DGALPPLPAECGAEKHPVVVLRSVYTKEESDADPHFFDDLEADMLMECVKFGTVISVATPELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEALVTGKEVLEKE--EDKATSANSQQQQINGTGGDKTDGEED----------MGPLLQGVPDSPDHPPTDLNSFLESV 1335
            D ALPPLP ECGA+KHPVVVLRSVYT+EES+ADPHFFDDLEADMLMECVKFGTVISVATPE PGYFG VV+TF TS GAN CAEAMHGRWFDQRQIEALVTGKEVL KE  E+  T                                +GPLLQG PDSP  PPTDLNSFLESV
Sbjct:   86 DSALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEEPGYFGCVVITFKTSDGANACAEAMHGRWFDQRQIEALVTGKEVLGKEGGENGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLGPLLQGPPDSP--PPTDLNSFLESV 257
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: A0A835YW78_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW78_9STRA)

HSP 1 Score: 182 bits (461), Expect = 6.510e-49
Identity = 111/255 (43.53%), Postives = 145/255 (56.86%), Query Frame = 1 
Query:  415 MGGQSRA-GIGTAGAKAQNTSVYLTGLPPDVTQARIELVFSQYGNVKRTKVYRDDAN-----RAKGDGLVTYAKPASVDLAIAKLNGHEISVGHPISVSMADFNRTKSGAVEGAPPLPPXXXXXXXXXXXXXXXXADYGSXXXXXXXLGASDGALPPLPAECGAEKHPVVVLRSVYTKEESDADPH-FFDDLEADMLMECVKFGTVISVATPELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEALVTGK 1158
            MGGQSR+ G+G A A+     VY+TGLPP  TQA++E +FS +G ++R KVY +D +     R KGD LVTY KP+SVD A+ +LNGH+++ G  I V+ ADF+  + G                                     X     G  P LP +C AE++PVV+L +VYT EE   +P  F+ +LEADML EC +FGTV  V T E   Y GSV +TF  S GA  CA+ MHGR+FD RQIE  + GK
Sbjct:    4 MGGQSRSMGLGAAAARQAQCGVYVTGLPPTTTQAQLEQLFSAHGPIRRVKVYMEDGDKDASTRCKGDALVTYVKPSSVDTAVPRLNGHQVAPGFTIKVTQADFSHKEGGR----------------------------------DSXXXXXXG--PALPEQCCAEQYPVVILHNVYTAEEVTENPDGFYSELEADMLGECARFGTVRCVVTLE-GEYEGSVAITFADSAGARECAKTMHGRFFDGRQIEVDIVGK 221
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: A0A7S2R3X3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3X3_9STRA)

HSP 1 Score: 179 bits (453), Expect = 7.150e-46
Identity = 106/257 (41.25%), Postives = 138/257 (53.70%), Query Frame = 1 
Query:  424 QSRAGIGTAGAKAQNTSVYLTGLPPDVTQARIELVFSQYGNVKRTKVYRDDANRAKGDGLVTYAKPASVDLAIAKLNGHEISVGHPISVSMADFNR----TKSGAVEGAPPLPPXXXXXXXXXXXXXXXXADYGSXXXXXXXLGA-------SDGA--LPPLPAECGAEKHPVVVLRSVYTKEESDADPHFFDDLEADMLMECVKFGTVISVATPELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEALVTG 1155
            QSR GIG    +A+NTSVY+ GLP  +T A+++L+FS +G VKR KVYRDDA + KGD LVTY K  SV  AI K+NGH I+ G  + VS ADF+        G  E                        D          +G         DG     PLP EC  E+ P  VLR+VYT E++ +   F DDLEA++L EC++FG+V+ V TP  P Y G+V VTF+  + A  C E M GR+FD R ++    G
Sbjct:  146 QSRLGIGAGRVEAENTSVYVAGLPQSITWAQMDLLFSPFGRVKRIKVYRDDAGKPKGDALVTYVKQGSVASAIQKMNGHTIAPGMKLHVSPADFSHKDQSVDGGEDEDGVAEDEAESSGGGVGRANDAEDVDGQGMEAVEALVGPLKDEDFDEDGVPRFTPLPDECRPEQCPTCVLRNVYTAEQAASTSSFLDDLEAEILRECIQFGSVVCVVTPSQPYYVGAVCVTFEDIQAAQHCGEVMDGRFFDYRTMQVQALG 402
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: A0A4D9CYD4_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYD4_9STRA)

HSP 1 Score: 158 bits (400), Expect = 7.170e-39
Identity = 98/250 (39.20%), Postives = 136/250 (54.40%), Query Frame = 1 
Query:  433 AGIGTAGAKAQNTSVYLTGLPPDVTQARIELVFSQYGNVKRTKVYRDDANRAKGDGLVTYAKPASVDLAIAKLNGHEISVGHPISVSMADFNRTKSGAV--EGAPPLPPXXXXXXXXXXXXXXXXADYGSXXXXXXXLGASDGALPPLPAECGAEKHPVVVLRSVYTKEES-DADPHFFDDLEADMLMECVKFGTVISVATPELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEALVTGKEVLEK 1173
            AG+G   A  ++ SVY+ GL  + T  +++++F+ YG ++R KVYRD   + KGD LVTYA+P S   AI KLNG+ ++  H + +S ADF+  + GA   EG                       DY +                 LP EC A+K+PVV+LR+VY   E+ D D   F +LE DML ECV+ G V  + TPE   Y G+V V F + + A  CA+AMHGR+FD RQI+  + GK   EK
Sbjct:  174 AGVGAEAAAVESASVYVEGLMAETTWDQLDILFAPYGRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSYKEEGANVHEGI-----GFDDHMAHPAQEEDEQEDYET-----------------LPPECEADKYPVVILRNVYDPTETADED---FAELETDMLQECVRHGEVKRIVTPEGDYYAGAVAVVFVSFEAAQACAKAMHGRFFDGRQIDVELQGKVEAEK 398
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: A0A0D2BHU1_9EURO (Uncharacterized protein n=2 Tax=Exophiala TaxID=5583 RepID=A0A0D2BHU1_9EURO)

HSP 1 Score: 104 bits (259), Expect = 1.740e-20
Identity = 86/279 (30.82%), Postives = 126/279 (45.16%), Query Frame = 1 
Query:  442 GTAGAKAQ----NTSVYLTGLPPDVTQARIELVFSQYGNVK--------RTKVYRDDANRAKGDGLVTYAKPASVDLAIAKLNGHEISVGHP-----ISVSMADFNRTKSGAVEGAPPLPPXXXXXXXXXXXXXXXXADYGSXXXXXXXLGASDGALPPLPAECGAEKHPVVVLRSVYTKEESDADPHFFDDLEADMLMECVKFGTVISVATPELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEALV-TGKEVLEKEEDKATSANSQQQQING 1224
            G AG K++    NT+VY+T +P D  Q  I+ VFS+ G +         R K+Y DD  + KGD LV Y +P SVDLAI  L+  +  +G       + V  ADF+  KS     A                      D+             D   P    +  +    VV+L+ ++T EE + DP    +++ D+  EC K G V +V   +     G   V F  ++ A  C   M+GRWFD+RQ+EA V TG E  +K  D+A   + ++ Q  G
Sbjct:   97 GEAGQKSKRPRVNTAVYVTSIPLDADQEEIQHVFSKCGVIAEEIDSGKPRIKMYEDDKGQFKGDALVVYFRPESVDLAIQMLDDSDFRLGSEGPAGKMKVQAADFSY-KSQQEAPAKTSKKDQKKIIKRTQKMMGKLTDW-------------DDDDPQAIPDTSSRWDKVVILKHMFTLEELEEDPAAMLEIKEDIREECSKLGEVTNVVLFDKEPA-GIASVRFSNAEAAAACVRLMNGRWFDERQLEAFVSTGNEKFKKSSDRAVEDDDEEDQEGG 360
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: A0A072PAZ5_9EURO (Uncharacterized protein n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072PAZ5_9EURO)

HSP 1 Score: 102 bits (254), Expect = 7.910e-20
Identity = 81/254 (31.89%), Postives = 115/254 (45.28%), Query Frame = 1 
Query:  466 NTSVYLTGLPPDVTQARIELVFSQYGNVK--------RTKVYRDDANRAKGDGLVTYAKPASVDLAIAKLNGHEISVGHP-----ISVSMADFNRTKSGAVEGAPPLPPXXXXXXXXXXXXXXXXADYGSXXXXXXXLGASDGALPPLPAECGAEKHPVVVLRSVYTKEESDADPHFFDDLEADMLMECVKFGTVISVATPELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEALV-TGKEVLEKEEDK 1185
            N++VY+T +P D  Q  I  VFS+ G +         R K+Y DD  + KGD LV Y +P SV+LAI  L+  +  +G       + V  ADF+  KS     A                      D+             D   P    +  ++   VV+L+ ++T EE   DP    +++ D+  EC K G V +V   +     G   V F T++ AN C   MHGRWFD+RQ+EA V TG E  +K  DK
Sbjct:  107 NSAVYVTSIPLDADQEEINHVFSKCGVIAEEIDAGKPRIKMYEDDQGQFKGDALVVYFRPESVELAIQMLDDSDFRLGTEGPSGKMRVQAADFSY-KSQQEAPAKSNKKDQKKVIKKTQKMMSKLTDW-------------DDDDPQTLQDTSSKWDKVVILKHMFTLEELQEDPAAMLEIKEDIREECSKLGEVTNVVLFDKEEA-GVASVRFSTAEAANACVRLMHGRWFDERQLEATVATGTEKYKKSSDK 345
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: A0A8H4Y5M5_9HYPO (Uncharacterized protein n=1 Tax=Fusarium sp. NRRL 66182 TaxID=2692428 RepID=A0A8H4Y5M5_9HYPO)

HSP 1 Score: 102 bits (254), Expect = 8.020e-20
Identity = 92/278 (33.09%), Postives = 119/278 (42.81%), Query Frame = 1 
Query:  463 QNTSVYLTGLPPDVTQARIELVFSQYGNV---------KRTKVYRDDANRAKGDGLVTYAKPASVDLAIAKLNGHEISV-------GHPISVSMADFNRTK---------SGAVEGAPPLPPXXXXXXXXXXXXXXXXADYGSXXXXXXXLGASDGALP-PLPAECGAEKHPVVVLRSVYTKEESDADPHFFDDLEADMLMECVKFGTVISVAT----PELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEA-LVTGKEVLEKEEDKATSANS 1203
            QNT+VY+TGLP D T   +  +FS+   V          R K+Y D     KGD LV + KP SV++AI  L+  +  V       GH + V  AD +  K          G   G     P                 D          L   D  LP P   E   +   +V+LR ++T EE + DP    +++ D+  EC K GTV +V      PE     G V V F  ++ A  C   MHGR FD R +EA L TGKE  EK EDK    NS
Sbjct:  112 QNTAVYVTGLPVDTTVDEVHQLFSRKAGVIAEEIDSGAPRIKLYNDSEGNFKGDALVVFFKPQSVEMAIMLLDDTDFRVTASGTREGH-MRVQAADSSYKKVKYDQEGGADGEKSGRAEKKPQNNNRDRQKIIKKTQKLD--------AKLADWDDDLPYPGQPEAPTKWDKLVILRHMFTLEELEEDPAALLEIKEDIREECAKLGTVTNVVLFNQEPE-----GIVSVKFKDAESALACINLMHGRIFDGRTVEAFLATGKEKFEKSEDKEDQENS 375
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: A0A2P6TVN0_CHLSO (Splicing factor U2AF-associated 2 isoform A n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVN0_CHLSO)

HSP 1 Score: 103 bits (258), Expect = 1.170e-19
Identity = 82/239 (34.31%), Postives = 113/239 (47.28%), Query Frame = 1 
Query:  466 NTSVYLTGLPPDVTQARIELVFSQYGNVK-------RTKVYRD-DANRAKGDGLVTYAKPASVDLAIAKLNGHEISVGHP-ISVSMADFNRTKSGAVEGAPPLPPXXXXXXXXXXXXXXXXADYGSXXXXXXXLGASDGALPPLPAECGAEKHPVVVLRSVYTKEESDADPHFFDDLEADMLMECVKFGTVISVAT----PELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEA 1143
            NT+VY+TGLP DVT+A +   FS+ G +K       R K+YRD +  R KGDGLVTY K  SVDLAI  L+G  +  G P +SV+ A F +     VE                                    G  D AL P        +   V+LR++++ EE   +P + ++LE D+  EC K G V  +      P+     G V V F T + A+ C   M+GR+F  RQ+EA
Sbjct:  308 NTNVYVTGLPEDVTEAELVETFSKCGVIKEDLEGRPRIKIYRDKETGRPKGDGLVTYLKEPSVDLAIQILDGTPLRYGLPNMSVTQAKFEQKGEQFVE--------------RRANKKAAKKKLEKLEKRALGWGGFDDALKP--------QQVTVILRNMFSPEEFAENPGYKEELEGDIRSECAKLGRVDKLRVFNGHPQ-----GVVSVKFVTLEAADECVRIMNGRFFGGRQLEA 519
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BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Match: A0A507BL93_9FUNG (RRM domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BL93_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 1.690e-19
Identity = 83/264 (31.44%), Postives = 123/264 (46.59%), Query Frame = 1 
Query:  466 NTSVYLTGLPPDVTQARIELVFSQYGNVK--------RTKVYRDDANRAKGDGLVTYAKPASVDLAIAKLNGHEISVGHPISVSMADFNRTKSGAVEGAPPLPPXXXXXXXXXXXXXXXXADYGSXXXXXXXLGASDGALPPLPAECGAEKHP---VVVLRSVYTKEESDADPHFFDDLEADMLMECVKFGTVISVATPELPGYFGSVVVTFDTSKGANTCAEAMHGRWFDQRQIEA-LVTGKEVLEKEEDKATSANSQQQQIN 1221
            NTS+Y+TGLPP+     ++ VFS+YG +         R K+Y+DD+   KGD L+TY KP SV LAI  ++  E   G    V +A+       AV      PP                    S       L      L     E GA+      VVVL+ ++T++E + DP    DL+A++  EC KFG V +V   +     G + V F   +GA+ C + M+ R+F  R++EA L  GKE   K     T  + ++++ N
Sbjct:  133 NTSIYVTGLPPNTDADEVKQVFSKYGIIAEDITTGQPRIKLYKDDSGVLKGDALITYFKPESVQLAINLMDDCEYRFGEVSKVHVAE-------AVFQPKERPPQEKKSGNQKA----------SKVVAQKKLHQLKRKLDWTEDEIGAKSEKLRKVVVLKHMFTQQELEEDPTLILDLKAEVREECEKFGEVTNVIMFDKSDE-GVLTVRFKEQEGADACVQKMNARFFAGRRVEAYLYDGKEKFAKSTGNETEEDQEERRKN 378
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.35.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1E0_9PHAE4.410e-12768.96RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FR18_ECTSI1.440e-6269.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YW78_9STRA6.510e-4943.53RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2R3X3_9STRA7.150e-4641.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CYD4_9STRA7.170e-3939.20RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A0D2BHU1_9EURO1.740e-2030.82Uncharacterized protein n=2 Tax=Exophiala TaxID=55... [more]
A0A072PAZ5_9EURO7.910e-2031.89Uncharacterized protein n=1 Tax=Exophiala aquamari... [more]
A0A8H4Y5M5_9HYPO8.020e-2033.09Uncharacterized protein n=1 Tax=Fusarium sp. NRRL ... [more]
A0A2P6TVN0_CHLSO1.170e-1934.31Splicing factor U2AF-associated 2 isoform A n=1 Ta... [more]
A0A507BL93_9FUNG1.690e-1931.44RRM domain-containing protein n=1 Tax=Synchytrium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:149292..155712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3694.POPTR_0010s18610.1
PFAMsDUF4339,RRM_1
Model size1873
Max annot lvl35493|Streptophyta
KEGG koko:K13093
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons8
Evalue7.97e-21
EggNOG OGsKOG1548@1|root,KOG1548@2759|Eukaryota,37JT2@33090|Viridiplantae,3GBEP@35493|Streptophyta,4JJMB@91835|fabids
DescriptionSplicing factor U2AF-associated protein
Cds size1287
COG categoryA
BRITEko00000,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.35.7prot_P-littoralis_Contig74.35.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 149343..155133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791528.8928113-UTR-P-littoralis_Contig74:149291..1493421680791528.8928113-UTR-P-littoralis_Contig74:149291..149342Pylaiella littoralis U1_48UTRP-littoralis_Contig74 149292..149342 +
1680791529.0065937-UTR-P-littoralis_Contig74:155133..1552551680791529.0065937-UTR-P-littoralis_Contig74:155133..155255Pylaiella littoralis U1_48UTRP-littoralis_Contig74 155134..155255 +
1680791529.019862-UTR-P-littoralis_Contig74:155299..1557121680791529.019862-UTR-P-littoralis_Contig74:155299..155712Pylaiella littoralis U1_48UTRP-littoralis_Contig74 155300..155712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791528.9091842-CDS-P-littoralis_Contig74:149342..1497221680791528.9091842-CDS-P-littoralis_Contig74:149342..149722Pylaiella littoralis U1_48CDSP-littoralis_Contig74 149343..149722 +
1680791528.9207628-CDS-P-littoralis_Contig74:150754..1508431680791528.9207628-CDS-P-littoralis_Contig74:150754..150843Pylaiella littoralis U1_48CDSP-littoralis_Contig74 150755..150843 +
1680791528.9331293-CDS-P-littoralis_Contig74:152003..1521311680791528.9331293-CDS-P-littoralis_Contig74:152003..152131Pylaiella littoralis U1_48CDSP-littoralis_Contig74 152004..152131 +
1680791528.9430685-CDS-P-littoralis_Contig74:152612..1526811680791528.9430685-CDS-P-littoralis_Contig74:152612..152681Pylaiella littoralis U1_48CDSP-littoralis_Contig74 152613..152681 +
1680791528.9583168-CDS-P-littoralis_Contig74:153240..1534951680791528.9583168-CDS-P-littoralis_Contig74:153240..153495Pylaiella littoralis U1_48CDSP-littoralis_Contig74 153241..153495 +
1680791528.970458-CDS-P-littoralis_Contig74:154426..1545691680791528.970458-CDS-P-littoralis_Contig74:154426..154569Pylaiella littoralis U1_48CDSP-littoralis_Contig74 154427..154569 +
1680791528.9808726-CDS-P-littoralis_Contig74:154910..1551331680791528.9808726-CDS-P-littoralis_Contig74:154910..155133Pylaiella littoralis U1_48CDSP-littoralis_Contig74 154911..155133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.35.7

>prot_P-littoralis_Contig74.35.7 ID=prot_P-littoralis_Contig74.35.7|Name=mRNA_P-littoralis_Contig74.35.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=429bp
MTGTSIYSSCGAFFSCPAGKHSYLRKTLFLSSTKHCLLRSPQVPHHPRLV
RACVHAYVGVCVCACDTCCVKTYLRKDEIARRKRLGLPLDGLIDKAMLQG
AGGGTGGAAAGKSSAPPRQPAMGGQSRAGIGTAGAKAQNTSVYLTGLPPD
VTQARIELVFSQYGNVKRTKVYRDDANRAKGDGLVTYAKPASVDLAIAKL
NGHEISVGHPISVSMADFNRTKSGAVEGAPPLPPPPPQEAEQEEQEEQNA
ADYGSGDGDGQGLGASDGALPPLPAECGAEKHPVVVLRSVYTKEESDADP
HFFDDLEADMLMECVKFGTVISVATPELPGYFGSVVVTFDTSKGANTCAE
AMHGRWFDQRQIEALVTGKEVLEKEEDKATSANSQQQQINGTGGDKTDGE
EDMGPLLQGVPDSPDHPPTDLNSFLESV*
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mRNA from alignment at P-littoralis_Contig74:149292..155712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.35.7 ID=mRNA_P-littoralis_Contig74.35.7|Name=mRNA_P-littoralis_Contig74.35.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=6421bp|location=Sequence derived from alignment at P-littoralis_Contig74:149292..155712+ (Pylaiella littoralis U1_48)
ATATCCACCCCTCAGTGCCCACGCCCACACTCTCAGGTCGTCTGCGGAGT
CATGACTGGTACTTCCATATATTCTTCGTGCGGAGCCTTTTTTTCATGCC
CTGCTGGGAAGCATTCCTATCTACGGAAGACACTTTTTTTATCGTCCACA
AAACACTGCCTTCTTCGTTCACCACAAGTTCCCCACCACCCCCGCTTGGT
ACGTGCGTGCGTGCATGCGTACGTTGGCGTGTGTGTGTGTGCGTGTGACA
CGTGTTGTGTGAAAACATATCTCAGAAAGGATGAGATCGCTCGCCGAAAG
CGGCTCGGGTTGCCGTTGGATGGGCTCATCGACAAAGCCATGCTTCAAGG
CGCAGGCGGCGGGACAGGGGGGGCGGCGGCGGGGAAATCGAGCGCCCCGC
CTCGACAGCCGGCCATGGGAGGGCAGAGCAGGTAGTTTTTTTCTCCCTTT
TGTTTCTTTTCGTTTCTTTTCGTTTCTTTCCTCTCTGTTTGTTTACTTTC
GTTGTATTTTGTTTTGTCTTATCTTGAGAATCTGGCACCCAGCCGCCCGA
ACCCAATCGGGTGAAGGGGTATTGGAGGGGAAAGAGGGGAGAAAAAACAG
ACAAGCATGCCTCTGAACGTTTTGTAGAGAAGATAACCCAAGGAACCGGC
TCCTTGGGCCGATTCTCAACCAGTTCTCTTGCTCGCAGCAACTTTGAAAG
GGCTGATTACAACTCCTCCCGCAACACGAGAGGGTTGACAATATACTTCA
AAGTACGAAATGACCTCTCGACAAGATGGATTGATCTGTTCGAAGAATGC
CACTTTTTGTTTTGGCATGGGCACCCTTGCTGCCGTCGAGAAGTCGAGCC
ATGAAAAACGTCCTAGGGTCTTGGCCCCGTGTGTCTTCTTATATATATTG
CGGTGTACTTCGCCTTTGTGTGTTTGACTTGGTGTTACCCTTGAACCCCC
ACCCCTTCTTCCACGAGCCCTCAACGTGGCTGCGGTAGTGGAGAGCGTGG
CCTGCAAGTCCTCAGCTTTTCCAAGCTTGGTGCTTTCTCCCGTGCGAACG
AACGAAGTGTGTTGTAAGAAATTCAACAATCGTGAAAAGATAGAAAAAAA
AGTGTCATGGTCTCTCTCGTGCTGTCGCGGTTCGTCGTTTCGTCGTCGGA
ACGGGAGTGGTGGTTAGCCAGCTCCGCCAAGCCAAAGACACGTTTTGACG
AATAAAATTAAAAAAAGTGCATGAAAAACGAAGACTCAAAAAAAGAGACA
TGTGTTTATGGCTCGTGTTGTTCTTTCTCGTCATGGGGAGGGAACAGCGC
TCGTCGGGCAGCTTGGTTGGGGCCGCGTTTTTTTGTGTTTTCTCACGCAG
TAAAGTCTTACGTTCAAGGTGCTCCGAAGTAAGATGTACGAAGTACAAGT
TAAGCTAACAAGAGCTGTCAATCTTCCCGTGTTTGCCCCGTTTCGTCATG
GGAAATCGACCAGGGCGGGGATCGGGACGGCCGGGGCAAAGGCCCAGAAC
ACAAGCGTGTACCTCACCGGGTTACCGCCGGACGTTACTCAGGCCAGAAT
CGGTAAGCCTTGCGTATTTGTTTGCTCCAAGTATACATGTGTGTGTGTAT
GTGTGCACTTCTTGTAAATATCAAATATAAGGGTGGTTGTCCCGGAGTGC
GGAGTATTGGTTGCGACCCTGACCTCGAACTCGAATTTGTGGTATTTTAC
TGAGTTTACTCGACCGGTCGCCCCGGTGGTCTACAGTACCGGCCCGCTCA
TAAGAAGCACCTTTATAAGAAAGCGAGGCGGGAATTTTTCAAAAATTAAG
AAATTTGGCGTAAGAAAATGGGCTCGGCAGCCGGCGCCACACTAAATCCT
ATACGATGGTCAAGAAATAGCCATACTTAGTGCTGGTGACACAACAAGAA
GCGAAGGCTGAGGCTGATTTCCAGTTTCTTATAAGCGGGCCGGTACTGTA
GTAGTAAGATCGCAGGTTCGATTCTATCTCAGAGCGTTTCTGGGGCCTTC
ATGGAAAGGGGATTATTTGTGAGTAAACAGATGAAAGGGGTTGCTGAACC
CGTCTCGCATTCAAAACCATAGGTACCGCAGGAGGAGAGGTGTAAGCAAT
AACTCAAAATGAAAAACAAAAAAGCTCGTGGGTGATCTTCCTTCTGTGTG
ACTCCGGCTGGTGCACCCACTTCATACCGAAATGGGTAGACCGGTGCCCA
GAATATATGGGACGAACACACACATAATGCAAAGTGCGTACATATGTATA
TGGTTGGTGTTTCGGTGTTAATTTGTGTGCATGCGCCTTTGCAGGGGTTG
CTTCACGCAGGAAGACAAAGCGGTACATGCCACTTCTTGCTCTGGAGTTT
CTCAACCATAACGGACCGTGCGGTCGGGATGCGCTGATTAATGCCAATAT
TTTCATGGATATCTCGTTGGGTAGATGTATGCTGTGTTCATGTATTGAGC
ACAAGAACAAGAACACGGGCTAGTGCTTTTTTTTCATCTGACGTCTTCTT
TCCTGCATGTTTTTTTTATTTTTGCATTTGCATTTGCATTTGTCGCCTAT
TTGCATTTGTCGCCTATGCTTGTCTGTAATACTGCAGTGACTGGTAAGCT
GGCTTTTTTTTGTATCACTCTGACGTACATACGACATGTCGTTTGCTTTG
CGACGATTTTGCTTGTCTGCACCTCAAATGTGCGTGCGGTGACTGAAAAA
AAACAAAAAAAGAGCTGGTGTTCTCCCAGTACGGCAACGTGAAGCGGACT
AAGGTGTACAGGGACGATGCCAATCGGGCCAAGGGGGACGGCCTGGTGAC
GTACGCGAAGCCTGCCTCGGTCGACCTCGCCATCGCAAAGGTGACAACGG
CGTCACATGCATATCATATGAAGTAACTTTTTGTCTTTACAGTATCAAAT
CATACACATGTGTTCAAAGGGAGTACATTTACGCATGTATGATATGGTAT
GACGTGCTGTGGTACCTAGCTGCACGTTCCGCGACGGGTTTTGTGTATGC
ACGAAGAGCGGTTCGGTTTTCGTTCGCTTGGGTTTCACCGGTATGTGGCG
TGCATGCGTAGCATAGCACGGCGGTGGGGGGGGGGGCAGTCTTCTTCATG
AAGCTTGAGAGCAAGTTCTTCCTTTTCCTCGCTTCAAAGTCAACTGCTGA
GCATCCCCCTCTGGAATCCCACCAGAAGTATGCATGCGTAGGCATGGATG
TTCATCTACCAATAAAGAATTGAATAATAATGATCCGGACACCGGATCGC
GAAGAACAACAAGCGAGACGGAAAGCCTGACCCCCCCCCCCCTACCCCCC
CCTACCCCTTCCCGGAGCCAGTTGAACGGACACGAGATCTCCGTGGGACA
CCCTATCTCCGTGAGCATGGCGGATTTCAATAGAACCAAGGTAAATACTA
ATATTTTTTCATCGACTGGATTTTAAACTGACCTTACTTCACTTGACTTG
ACCCCTCCTCATTGGGACTAAGTGTAGTTGGGCGCAGTCGGAAAAATATA
TTCATGGAATTTCGCAGCTGAATTTGACGCCCTGATTTCGCCTTGAAAAA
CTGCTTCCCAAAGCCGTGAACGTTTTTTATCGGCGGTAGGCAACAGCAGC
AGCAGTAGCGATAGGAACAGTAGCAGTAGCACAACGACGACAATGGAACA
CCCCCCCCACCTCCCCCGCGTCAGTCTGCGTGTGTATGCGGGCTTGGGTG
GCACCATCCGAATAAAATGTGTCTAATTTAAGAGCAGCGCGTCTAGCAAA
CCCCATCGTGTACAGTACTTATCCTGCTTTGTACTTCGAAGTATTTATCA
TATGTATGCTGCTGTTCTTTGAATTTCTTTTGTATTCATATTCCATCTGA
TTTGTTTTTGCTCGTTGGACGCTGAATGTTTTGTTCAAAGACGTTCCTTG
TCCAAAAAATGCTGACGGCATGCTTTTGTTGCTTGCCGCCCTGAAACAGT
CGGGTGCCGTCGAGGGAGCGCCGCCATTGCCACCGCCGCCGCCGCAGGAG
GCGGAGCAGGAGGAGCAGGAGGAGCAAAACGCGGCGGACTACGGTAGTGG
CGACGGTGATGGGCAGGGGCTGGGAGCTTCCGATGGTGCTCTGCCCCCAC
TTCCGGCGGAGTGTGGCGCGGAGAAGCACCCCGTGGTTGTGCTGAGGAGC
GTCTACACGAAGGAGGAGTCGGATGCCGACCCTCACTTCTTCGACGACCT
GGAGGTACATGTGTGGGGGGAATGTTTTTTTGTTTCGTGATGGGCGATGG
ATTATTACATATGTGTATCATATGATATGTCTGTTGTGTTCGTGTGGATG
CATCTACGGAGATGGTGGTAATTGCTGTTTTTTGTTTTATTTGAGGTTGG
TTCCTTTTTTCTTTTTGTCTTGATGGTGGATTACGGTTGTTCGATTTTGT
TTGACTGTGTCGTACGAGCGTGTGGATGGATCGGTGGAGGCGTGTGCCGA
TTGTTTCCGATGCAGTTTTTGTAGTGGCGGTGTGTTGCGGTAGATAGCTG
GCTGGTCTCGAGGAGCTCCCACGTTGTTGGAAGTCGCAGGGCGACGCTAC
ATAGCTTCGAAGATGATCGGGAGTTGCGTGTCTTTCATCGGCTTCCAGAG
CTCCCTAGGTGGTTGGATAACCGTGGTGGTGGTGGTGGTGGCGTTTTACA
GTCGGACTGCGACTCTTGATAGGTCGTAGATCGGGGGTTGCGCGTCTTTA
CCCGGCTTCCACAACTCCCTCGGGGATTAATTGAGTGTCCGTGGATGGTC
GTGCTGTGTTATCACCATAGTTCTTTGTCACTAGTCGAGCCCGGGGAACA
TGTAGTGTTTGGATTGATGGGATATTCGTGAAATTGGTGAAAATACATCT
CTGCTTGTCTGTTTCTACCTCAACTTGGCGGCGCGCGTCTTGTTGCGGGG
AAAGGTCACTGCATTTTTTGCGATCGGCTGGACTGCGACACGTGGCTTGT
GCGCTCTTTGCCGCGTTCCCTCTCGCAGAACCACTCCTCTTGTGGCCTCG
TGCTCGATGACCGGGGAAAGTCGGTGCCCTCCTCTCAACCTCACGGACCT
GCATATCATACCTCCGACCCGATCTCGCTTTCACCAATCGCTACTGCTGC
TTTTTTTTTTTTCTTAATTGCTTGTCTCAACACAGGCTGACATGCTGATG
GAGTGCGTCAAGTTCGGCACCGTCATCAGCGTCGCCACTCCGGAGTTGCC
GGGCTACTTCGGGAGCGTGGTCGTCACGTTTGACACGAGCAAAGGGGCCA
ACACCTGCGCCGAGGCCATGCACGGAAGGTGGGCTGGCTGACCTCTGCTG
AGCTGTTGCTATTTCTTATTTTTTCCTTTGTTGCTGTTTTGCGGCGTCAC
ACAGAACAGCAGTTCCGCTCCCTAACCCCCCGACCCCACCGCCCCCCCCG
TCCGCTCCGCCACGGTCCTTCTCCATGAGCCCGCAAACTGATCGTTTGGT
CTCCCTCGGGATGAAGAAGCCTTTCTATTGCTTGTTGCGTTGATAACACG
AGTTCCAAGTATTTTGTAGTACCCCCCCCCCTCCAAAGGATCTGCTCCCA
GGCTCTCCGGAAACACGTTGAATGCATATTGTCATCATTTTGATGGTGTT
TTTATTTTTTTGCTCACAGGTGGTTTGACCAGCGTCAGATAGAGGCGCTC
GTGACAGGCAAGGAGGTTCTCGAGAAGGAGGAAGACAAAGCAACCTCGGC
AAATAGTCAGCAGCAGCAGATTAATGGGACAGGGGGGGACAAGACGGATG
GGGAAGAGGATATGGGGCCCTTGCTGCAGGGCGTGCCCGACAGCCCAGAT
CACCCTCCCACGGACCTCAACAGCTTCTTGGAGTCAGTTTGACTACCGAG
TTTTGTTTTTGTTTTTTGTGGTATGTGTATGTTATGTGTGAAGTGAACAT
GTTTTGTTGTGTTGGTTTCGTTATTTATCACAAGGGTGGTCTGGCTTGTG
TGCCACCGCTCTCTGCTCTCCAGCTTCTTAGCTTTGATTATTTTGTTGGC
TTCATCCCTCTCTCTCTCTCTCTCTGTATCTCTCTCTCTTCTCTTTCTCT
CCCACCCTCTTTGTCGGGGCAACGGCAGCCGCTGTGAGTTTTGTGTGTGT
TTGTTTGTGCCACTTGCTCCACGTACTGCATGCGTGTGAAATTTAAGTTT
TTGGTTCGGCGGGTGGGAAAGAGAAAAAAGAGAAGGGCGAAGGCCGTTCC
CCGGCTCCTACATACGACAAGAAGTCTGGTGTCAGGGATCGCTCGTGGAA
AGGAAGGGTTGGGAGGCATATCATACCTCCAACCGCCGTATCTAGAACAC
ACCGCACAATACCCTCGCACGATTGTTTTTCTCGTGTGTGTGTGTGTGTG
TGTGTGTGTTGGGCCCGCAATTTTGGACAGCGTTCAAGGTACATCGCCCA
CGAACACATGTGTGCGCTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:149292..155712+

>mRNA_P-littoralis_Contig74.35.7 ID=mRNA_P-littoralis_Contig74.35.7|Name=mRNA_P-littoralis_Contig74.35.7|organism=Pylaiella littoralis U1_48|type=CDS|length=1287bp|location=Sequence derived from alignment at P-littoralis_Contig74:149292..155712+ (Pylaiella littoralis U1_48)
ATGACTGGTACTTCCATATATTCTTCGTGCGGAGCCTTTTTTTCATGCCC
TGCTGGGAAGCATTCCTATCTACGGAAGACACTTTTTTTATCGTCCACAA
AACACTGCCTTCTTCGTTCACCACAAGTTCCCCACCACCCCCGCTTGGTA
CGTGCGTGCGTGCATGCGTACGTTGGCGTGTGTGTGTGTGCGTGTGACAC
GTGTTGTGTGAAAACATATCTCAGAAAGGATGAGATCGCTCGCCGAAAGC
GGCTCGGGTTGCCGTTGGATGGGCTCATCGACAAAGCCATGCTTCAAGGC
GCAGGCGGCGGGACAGGGGGGGCGGCGGCGGGGAAATCGAGCGCCCCGCC
TCGACAGCCGGCCATGGGAGGGCAGAGCAGGGCGGGGATCGGGACGGCCG
GGGCAAAGGCCCAGAACACAAGCGTGTACCTCACCGGGTTACCGCCGGAC
GTTACTCAGGCCAGAATCGAGCTGGTGTTCTCCCAGTACGGCAACGTGAA
GCGGACTAAGGTGTACAGGGACGATGCCAATCGGGCCAAGGGGGACGGCC
TGGTGACGTACGCGAAGCCTGCCTCGGTCGACCTCGCCATCGCAAAGTTG
AACGGACACGAGATCTCCGTGGGACACCCTATCTCCGTGAGCATGGCGGA
TTTCAATAGAACCAAGTCGGGTGCCGTCGAGGGAGCGCCGCCATTGCCAC
CGCCGCCGCCGCAGGAGGCGGAGCAGGAGGAGCAGGAGGAGCAAAACGCG
GCGGACTACGGTAGTGGCGACGGTGATGGGCAGGGGCTGGGAGCTTCCGA
TGGTGCTCTGCCCCCACTTCCGGCGGAGTGTGGCGCGGAGAAGCACCCCG
TGGTTGTGCTGAGGAGCGTCTACACGAAGGAGGAGTCGGATGCCGACCCT
CACTTCTTCGACGACCTGGAGGCTGACATGCTGATGGAGTGCGTCAAGTT
CGGCACCGTCATCAGCGTCGCCACTCCGGAGTTGCCGGGCTACTTCGGGA
GCGTGGTCGTCACGTTTGACACGAGCAAAGGGGCCAACACCTGCGCCGAG
GCCATGCACGGAAGGTGGTTTGACCAGCGTCAGATAGAGGCGCTCGTGAC
AGGCAAGGAGGTTCTCGAGAAGGAGGAAGACAAAGCAACCTCGGCAAATA
GTCAGCAGCAGCAGATTAATGGGACAGGGGGGGACAAGACGGATGGGGAA
GAGGATATGGGGCCCTTGCTGCAGGGCGTGCCCGACAGCCCAGATCACCC
TCCCACGGACCTCAACAGCTTCTTGGAGTCAGTTTGA
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