mRNA_P-littoralis_Contig74.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.18.1
Unique NamemRNA_P-littoralis_Contig74.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig74.18.1 vs. uniprot
Match: D7FMU4_ECTSI (HELP domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU4_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 2.390e-79
Identity = 114/138 (82.61%), Postives = 124/138 (89.86%), Query Frame = 1 
Query:  139 SKDLLFFHTADGRQMTAKSKTKDITFETQTCPAGWMVQAAWPQGRPDLEPVSADRCTPAVVEGQAQLGPMLAAGYKTGQVEVYRYPCQNQGARSISATGHSTAASRVRFNADGRVLLSVGSDSRVVLQHSILPPLPPI 552
            SKDLLFFH  DGR+MTAKSKTKD+ FETQTCPAGW VQA WPQGRPDLEPVS DRCTPA+VEGQ QLG +LA GYKTGQVEV+RYPCQNQGARS+SA GHST A RVRFNADG  L+S+GSDSRVVLQHS+LPPLPP+
Sbjct:   32 SKDLLFFHVEDGRRMTAKSKTKDLAFETQTCPAGWTVQATWPQGRPDLEPVSTDRCTPALVEGQPQLGALLAVGYKTGQVEVFRYPCQNQGARSVSAGGHSTEAGRVRFNADGTALISIGSDSRVVLQHSVLPPLPPV 169
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BLAST of mRNA_P-littoralis_Contig74.18.1 vs. uniprot
Match: A0A6H5L9W0_9PHAE (HELP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W0_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 5.910e-62
Identity = 106/130 (81.54%), Postives = 116/130 (89.23%), Query Frame = 1 
Query:    1 SSGQIYVHDATDHYSLKATTRKPDDGSSITDVDFSTDKEALQATTSSKDLLFFHTADGRQMTAKSKTKDITFETQTCPAGWMVQAAWPQGRPDLEPVSADRCTPAVVEGQAQLGPMLAAGYKTGQVEVYR 390
            SSGQIYVHDA DHYSLK TT+K +D SSIT +DFSTD+E LQATTSSKDLLFFH ADGR++TAKSKTKD+ FETQTCPAGW VQA WPQGRPDLEPVS DRCTPA+VE Q QLG +LAAGYKTGQVEV+R
Sbjct:  951 SSGQIYVHDAADHYSLKCTTKKLEDVSSITSMDFSTDREVLQATTSSKDLLFFHVADGRRLTAKSKTKDLAFETQTCPAGWTVQATWPQGRPDLEPVSTDRCTPALVERQPQLGALLAAGYKTGQVEVFR 1080
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BLAST of mRNA_P-littoralis_Contig74.18.1 vs. uniprot
Match: A0A7S1C976_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C976_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.220e-13
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 1 
Query:   10 QIYVHDATDHYSLKATTRKPDDGSSITDVDFSTDKEALQATTSSKDLLFFHTADGRQMTAKSKTKDITFETQTCPAGWMVQAAWPQ--GRPDLEPVSADRCTPAVVEGQAQLGPMLAAGYKTGQVEVYRYPCQNQGARSISATGHSTAASRVRFNADGRVLLSVGSDSRVVLQ 522
            +IY++D +  + LK T  K +  S IT  DFS D   +Q+   + +LLFF++  G Q+ + +  +D  + T TC  GW VQ  WP      D+  V+           ++  G +LA     G V+++ YP   QGA+    TGHS+  + VR+    + +++VG + R V Q
Sbjct:  727 KIYLYDVSTFH-LKGTCAKHN--SYITHFDFSVDSSTIQSNCGAYELLFFNSETGDQIPSATSLRDKEWATWTCVLGWPVQGIWPAFADGTDINAVA-----------RSDDGKLLATADDFGNVKIFNYPANVQGAQYRMLTGHSSHVTNVRWVRGDQRVITVGGNDRGVFQ 885
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BLAST of mRNA_P-littoralis_Contig74.18.1 vs. uniprot
Match: F4Q7F1_CAVFA (HELP domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q7F1_CAVFA)

HSP 1 Score: 65.9 bits (159), Expect = 2.830e-9
Identity = 42/151 (27.81%), Postives = 70/151 (46.36%), Query Frame = 1 
Query:   79 SSITDVDFSTDKEALQATTSSKDLLFFHTADGRQMTAKSKTKDITFETQTCPAGWMVQAAWPQGRPDLEPVSADRCTPAVVEGQAQLGPMLAAGYKTGQVEVYRYPCQNQGARSISATGHSTAASRVRFNADGRVLLSVGSDSRVVLQHSI 531
            S+I  +D+S D   LQ+   + +LLF+      Q+T     KD  + T +C  GW VQ  W +G    +  S       V    +Q   +L  G  T  V +++YP  N+        GHS+  + V F+ D + +++ GS  R ++  S+
Sbjct:  515 SAILHIDWSVDGNYLQSNCEAYELLFWDAKTSLQITQSHTLKDTEWATWSCKLGWPVQGIWSKGEDGSDINS-------VYRSNSQ--DLLVTGDDTFNVNLFKYPVNNENTNKRIYKGHSSHVTSVMFSKDDKYIVTTGSGDRTIIIWSV 656
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BLAST of mRNA_P-littoralis_Contig74.18.1 vs. uniprot
Match: A0A8C4T793_ERPCA (EMAP like 1 n=17 Tax=Polypteridae TaxID=8289 RepID=A0A8C4T793_ERPCA)

HSP 1 Score: 64.3 bits (155), Expect = 1.000e-8
Identity = 43/150 (28.67%), Postives = 72/150 (48.00%), Query Frame = 1 
Query:   85 ITDVDFSTDKEALQATTSSKDLLFFHTADGRQMTAKSKTKDITFETQTCPAGWMVQAAWPQGRPDLEPVSADRCTPAVVEGQAQLGPMLAAGYKTGQVEVYRYPCQNQGARSISATGHSTAASRVRFNADGRVLLSVGSDSRVVLQHSIL 534
            IT +D+S D + L + +   ++L++  +  +Q+ +   T+DI +ET TCP G+ V   WP+G    +         AV     +    L+ G   G+V ++ YPC    A S    GHS+  + V F  D   L+S G     V+Q  ++
Sbjct:  677 ITHLDWSVDSQYLMSNSGDYEILYWIPSVCKQVVSVETTRDIEWETCTCPLGFHVFGLWPEGSDGTD-------INAVYRSHDKT--FLSTGDDFGKVHLFSYPCSQFRAPSHVYGGHSSHVTNVSFLFDDSYLISTGGKDMSVMQWRVV 817
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BLAST of mRNA_P-littoralis_Contig74.18.1 vs. uniprot
Match: UPI0018849444 (echinoderm microtubule-associated protein-like CG42247 n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018849444)

HSP 1 Score: 57.0 bits (136), Expect = 3.400e-6
Identity = 42/159 (26.42%), Postives = 73/159 (45.91%), Query Frame = 1 
Query:   85 ITDVDFSTDKEALQATTSSKDLLFFHTADGRQMTAKSKTKDITFETQTCPAGWMVQAAWPQGRPDLEP-------VSADRCTPAVVEGQAQLGPMLAAGYKTGQVEVYRYPCQ---NQGARSISATGHSTAASRVRFNADGRVLLSVGSDSRVVLQHSI 531
            +T +D+STD E LQA T   +L+ ++     +   +   +D  + + TC  G+ V  AWP    D +          + +    V   +++   +LA G   G +++YRYPC     + A+  S    S+  +  RF   GR L++VG     +LQ  +
Sbjct: 1010 LTQLDWSTDGECLQAVTVDHELILWNKRSLTKEKFQFNLRDKNWASYTCTVGYPVLGAWPDLHFDRQQGVWSDSYADSRKAKVLVSACRSRDHDLLAVGDSEGGIQLYRYPCPLNVKEAAQCHSYKPQSSYVASARFLRSGRQLVTVGGTDATLLQWRV 1168
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FMU4_ECTSI2.390e-7982.61HELP domain containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L9W0_9PHAE5.910e-6281.54HELP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S1C976_9STRA1.220e-1331.21Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
F4Q7F1_CAVFA2.830e-927.81HELP domain-containing protein n=1 Tax=Cavenderia ... [more]
A0A8C4T793_ERPCA1.000e-828.67EMAP like 1 n=17 Tax=Polypteridae TaxID=8289 RepID... [more]
UPI00188494443.400e-626.42echinoderm microtubule-associated protein-like CG4... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:72364..75281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FMU4
PFAMsANAPC4_WD40,EF-hand_7,EF-hand_8,HELP,WD40
Model size557
Max annot lvl2759|Eukaryota
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.92e-80
EggNOG OGsCOG2319@1|root,KOG2106@2759|Eukaryota
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-09_002540.1
Descriptionmicrotubule binding
Cds size555
COG categoryO
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791527.782214-CDS-P-littoralis_Contig74:72363..725291680791527.782214-CDS-P-littoralis_Contig74:72363..72529Pylaiella littoralis U1_48CDSP-littoralis_Contig74 72364..72529 -
1680791527.8236623-CDS-P-littoralis_Contig74:73040..731771680791527.8236623-CDS-P-littoralis_Contig74:73040..73177Pylaiella littoralis U1_48CDSP-littoralis_Contig74 73041..73177 -
1680791527.8387315-CDS-P-littoralis_Contig74:73868..739831680791527.8387315-CDS-P-littoralis_Contig74:73868..73983Pylaiella littoralis U1_48CDSP-littoralis_Contig74 73869..73983 -
1680791527.8559723-CDS-P-littoralis_Contig74:74183..742591680791527.8559723-CDS-P-littoralis_Contig74:74183..74259Pylaiella littoralis U1_48CDSP-littoralis_Contig74 74184..74259 -
1680791527.8660045-CDS-P-littoralis_Contig74:75220..752811680791527.8660045-CDS-P-littoralis_Contig74:75220..75281Pylaiella littoralis U1_48CDSP-littoralis_Contig74 75221..75281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.18.1prot_P-littoralis_Contig74.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 72364..75281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.18.1

>prot_P-littoralis_Contig74.18.1 ID=prot_P-littoralis_Contig74.18.1|Name=mRNA_P-littoralis_Contig74.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
SSGQIYVHDATDHYSLKATTRKPDDGSSITDVDFSTDKEALQATTSSKDL
LFFHTADGRQMTAKSKTKDITFETQTCPAGWMVQAAWPQGRPDLEPVSAD
RCTPAVVEGQAQLGPMLAAGYKTGQVEVYRYPCQNQGARSISATGHSTAA
SRVRFNADGRVLLSVGSDSRVVLQHSILPPLPPI*
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mRNA from alignment at P-littoralis_Contig74:72364..75281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.18.1 ID=mRNA_P-littoralis_Contig74.18.1|Name=mRNA_P-littoralis_Contig74.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2918bp|location=Sequence derived from alignment at P-littoralis_Contig74:72364..75281- (Pylaiella littoralis U1_48)
AGCAGCGGACAGATCTACGTCCACGATGCCACGGACCACTACAGCCTCAA
GGCAACCACCAGTGAGTGAGCCCCGAGGGGGGGACGGATACGATACATCC
TTCGTTTGGCCTTGCGGCGTTTTCGCCTCATGTCAGCTGACTAGATACCG
TCAGCGGGTTGCAGTAGCTGGTCGTGCAACAGAGTGCTTGACCGTCTGTG
GGAGAGGAAAACACACACAATGAACGATGTTTCTCTTTTTCCGCCAAGTT
AAAGAGGCCCCAACCCGTTGTGTTTGAGGAAGCATTGTGGTACATTCTGC
AGCAGCGCACGGATGCTTGCCGCATCGTACGTAGTAGATAAACCGGAATG
TCTACAACGGGAACATGATCGCCAGTGATCCAAAGGGTGGTGTTGAAATT
TTGAAGACTCCACCTTCGTGGAGATGTATCTTTCGGTACTGGCTCATAAC
CTCTTTATTTCGCGGATAACAGGCAGGTACATACTGCCAAAGCCTAAGGC
CACCCCTAATATGCATGGGATGGTAGATCGCGCAAGAACGCACGTAAAAC
CACGAGTACCTGCAGCAGCAACATAGGTATTACGCGAATCGACTCTACTC
GTAAGAGCCAGTGTTGCCTAGCTCGCCGCTTCCGCAATCACGCATCCACG
TGCCCAGATGGGTCAAACATTATCTGAGCCGACCTCCTCCCCCCACCCGC
CCCCCTCTTCCTCCTCCTCGTCTTCCTCCTCGTCTTCCCTCCCCCCCCCC
CCCTCCCTCTCCCGCCGAATTCGCCTTCTTTTCACCTTCTTCCCCATTTA
TCCCACTATCCCCTACTACTTCCCCACTTCGTCCCCTCTCCTCTTTCACG
AACTTCTTCCCATGTTTATCATCGTCTCTCACTTGTGCCGTTCCTCTCTC
GTTCCCTTCCCGCCCTCCACCCCCCCCCCCCTCCTGATATCGTCACTCTC
ACTTACATGGCTGTCATCTCCCGCAAACACGACGCGCGGGCATCGACATC
ACTTCTATGAAAATACCTACAGGAAAACCCGATGATGGGAGCTCCATAAC
CGACGTGGACTTTTCCACCGATAAGGAGGCTCTGCAAGCCACGACAAGGT
ATGTCATGCAGGTTCAAGAGCACATGAATATCCCCTTTTCCCTACATACA
TATCATACGCCCTGCCTGTTGCCACCTTTTTCGATGTTTTTCCGTGCGAA
GATGACTGGAAATTACTACCCTCCAATAACGAGACTCATTCGATCTCCGA
ACGCAAATCGCAAACGTAACCGTCGACCAACGAATTCAATTTCTTCAGCT
CGAAGGACCTTTTGTTCTTCCACACCGCCGACGGGCGTCAAATGACGGCA
AAGAGCAAGACCAAGGATATCACTTTCGAAACGCAGACGTGTCCCGCGGG
GTGGATGGTTCAGGTGAGAGTGATGGGCACAACATACGGCAGTTTCCTGG
ACATCCTCTAGCGCTTAACCCGTCCCGACATCACATATCAATTCCAATCG
GGGTTTGGAGCCGTCGTGCACTTGCATTGCGTACCAGGGGGAAAGGTGGA
CGAACGCTTCTCCGGCTCATAGCCTTCATGGTACTATCATATAGGGCTGA
TTTCGCTTTGCCTCGATACCAGGGAGTCTTCACGTCGAAAATCAGACGCA
TCCAGATGGCCTCAACGACCCAGGTCGAGGATGAGAGCTTTCTCGCCCAA
CGCTAAGAGCATACATTGCTGTGTACTTTTTTTCCATCACTAGTTCGATG
CAATTAATCCCTGCTCTCTGTCTCTGTCTCTCTCTGTCGGTCTGTCAGGC
GTAAAATGGGTAAGGATTGGGGCAGTATCATCGTAACGTATTGTGGCTTG
TGCATCAGGGAACGCTTGAACATATTCCTTGAGGTCATAAAAGGCTACTT
GCCCACCAGGATTGCCTGCCCCTGTGGTGGAACTCAGACCGTAGATTGGA
TGGAGTTGTCACGGCACAAGACGGCGACATTAGCGCCCTGTGATATTTGT
TGAAATTTGACGAAGTTGCACTTCTTTAGTAATCTCGAACGCCGTAGCGC
ACAAGACCACCCTTCAAGCTGCACTTATCTCTCAAATGTTACACACTTTC
ACAGGCCGCTTGGCCGCAGGGGCGACCCGACCTTGAGCCTGTGTCGGCCG
ACAGATGCACCCCGGCTGTCGTGGAGGGACAGGCGCAGCTGGGCCCTATG
CTCGCAGCAGGGTACAAAACCGGCCAGGTGGAAGTCTACCGGTAAGAATA
GTACGATGCTGCACGCATACGTACGGAAAAGTTGGACGAACAAAACCAAA
TTGGGTTTGAACCGTACGCACATCTGACATTAATTTTGTCGGAGAATGGT
TTTGATTCAATAAATCACCCCCCATATCTGCCATGACAGTCACTGCGTGT
CTTTCACTCGAAGAATGATTCAGGGGTCGGAAGGTCTAAAAATTCATGCA
AATCCCTCCATGCATAAGAAATGAACCCCGGCTACCCAGCGGGGTCGGTT
TCTTCGCTCGCGGAACTCGCCAAGAGCGTTCGGCCGTAGGTAGTCACCTT
GCGCTGCCGGGAGTCGAAGTCGTGGTCGTGCAGCAGCTAGTTTCAGCAGA
CGCACATGAACACAATGGCTGGCTCGCAGGACAATGTAACCTGCAGTTTA
GAAATAATCCTTGCTCGGTCTCTTCGCTGCTGTTTTTTGTTTGTGCGTTT
TCAACTGCCCTCTTGCCGCAAACACGTGGACGTGCACGCGCGTTTGACAC
AGGTATCCTTGCCAGAACCAGGGTGCCAGGTCGATATCTGCCACTGGTCA
CTCCACGGCGGCAAGCAGGGTGCGGTTCAACGCGGACGGGAGGGTTCTAC
TGTCAGTAGGCTCTGACAGCCGGGTCGTCTTGCAGCACTCCATTCTCCCC
CCGTTGCCGCCGATTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:72364..75281-

>mRNA_P-littoralis_Contig74.18.1 ID=mRNA_P-littoralis_Contig74.18.1|Name=mRNA_P-littoralis_Contig74.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig74:72364..75281- (Pylaiella littoralis U1_48)
AGCAGCGGACAGATCTACGTCCACGATGCCACGGACCACTACAGCCTCAA
GGCAACCACCAGAAAACCCGATGATGGGAGCTCCATAACCGACGTGGACT
TTTCCACCGATAAGGAGGCTCTGCAAGCCACGACAAGCTCGAAGGACCTT
TTGTTCTTCCACACCGCCGACGGGCGTCAAATGACGGCAAAGAGCAAGAC
CAAGGATATCACTTTCGAAACGCAGACGTGTCCCGCGGGGTGGATGGTTC
AGGCCGCTTGGCCGCAGGGGCGACCCGACCTTGAGCCTGTGTCGGCCGAC
AGATGCACCCCGGCTGTCGTGGAGGGACAGGCGCAGCTGGGCCCTATGCT
CGCAGCAGGGTACAAAACCGGCCAGGTGGAAGTCTACCGGTATCCTTGCC
AGAACCAGGGTGCCAGGTCGATATCTGCCACTGGTCACTCCACGGCGGCA
AGCAGGGTGCGGTTCAACGCGGACGGGAGGGTTCTACTGTCAGTAGGCTC
TGACAGCCGGGTCGTCTTGCAGCACTCCATTCTCCCCCCGTTGCCGCCGA
TTTAA
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